Wall clock time and date at job start Sun Mar 29 2020 22:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 C 1.52999 * 109.46961 * 240.00608 * 2 1 3 9 9 H 1.09000 * 109.47486 * 59.99547 * 8 2 1 10 10 N 1.46506 * 109.47075 * 299.99478 * 8 2 1 11 11 C 1.34771 * 120.00011 * 154.99805 * 10 8 2 12 12 O 1.21582 * 120.00494 * 0.02562 * 11 10 8 13 13 N 1.34784 * 119.99783 * 180.02562 * 11 10 8 14 14 C 1.46501 * 119.99679 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46942 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.37865 * 120.00077 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00201 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00236 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47503 * 89.99905 * 19 17 15 21 21 H 1.48502 * 109.47374 * 209.99977 * 19 17 15 22 22 H 1.48505 * 109.46942 * 329.99924 * 19 17 15 23 23 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 24 24 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 25 25 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 27 27 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 29 29 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 30 30 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 32 32 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 33 33 H 1.09001 * 109.47289 * 180.02562 * 7 6 5 34 34 H 0.97008 * 119.99717 * 335.00453 * 10 8 2 35 35 H 0.96995 * 119.99688 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.47064 * 299.99384 * 14 13 11 37 37 H 1.09000 * 109.47589 * 60.00128 * 14 13 11 38 38 H 0.97004 * 119.99916 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4415 0.0001 7 6 3.5704 -0.7203 -1.2490 8 6 2.0399 -0.7211 -1.2493 9 1 1.6765 -0.2073 -2.1393 10 7 1.5516 -2.1024 -1.2494 11 6 1.4228 -2.7716 -2.4121 12 8 1.7122 -2.2291 -3.4610 13 7 0.9731 -4.0422 -2.4122 14 6 0.8336 -4.7697 -3.6761 15 6 0.3171 -6.1587 -3.4018 16 1 0.1127 -6.4683 -2.3875 17 6 0.1045 -7.0337 -4.4457 18 7 0.3519 -6.6562 -5.6811 19 14 -0.5365 -8.7551 -4.1059 20 1 -2.0211 -8.7459 -4.1380 21 1 -0.0247 -9.6875 -5.1422 22 1 -0.0731 -9.2004 -2.7671 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6767 -1.7490 1.2492 27 1 1.6767 -0.2074 2.1392 28 1 3.9329 0.3071 1.2496 29 1 3.9334 -1.2349 2.1391 30 1 5.1704 -1.4415 0.0004 31 1 3.7175 -2.4693 -0.0002 32 1 3.9334 0.3075 -1.2488 33 1 3.9337 -1.2340 -2.1391 34 1 1.3209 -2.5353 -0.4125 35 1 0.7426 -4.4750 -1.5753 36 1 0.1329 -4.2424 -4.3234 37 1 1.8045 -4.8340 -4.1674 38 1 0.2026 -7.2720 -6.4155 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243959976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:52 Heat of formation + Delta-G solvation = -84.583830 kcal Electronic energy + Delta-G solvation = -17718.581101 eV Core-core repulsion = 14979.692013 eV Total energy + Delta-G solvation = -2738.889088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36733 -39.38662 -36.10613 -34.70152 -34.14619 -33.39116 -30.91178 -28.97650 -27.07094 -24.81760 -23.40946 -22.38870 -21.92700 -20.15479 -19.71933 -18.08965 -17.19145 -16.61365 -16.37417 -16.10610 -15.58466 -15.32705 -14.96794 -14.66619 -14.29430 -14.01595 -13.93715 -13.70715 -13.11916 -12.87798 -12.82182 -12.71883 -12.56825 -12.37544 -12.21646 -11.78199 -11.47299 -11.37530 -11.25181 -11.13091 -10.88563 -10.79299 -10.15010 -9.53109 -8.27848 -6.44516 1.43449 1.46515 1.57510 1.96140 2.30458 2.40496 3.07069 3.57618 3.71349 3.85477 3.88019 4.21202 4.26775 4.50969 4.56171 4.59416 4.71228 4.74321 4.86798 4.98324 5.07753 5.10354 5.17356 5.20479 5.27630 5.32299 5.34946 5.41419 5.47381 5.50667 5.55919 5.68184 5.76969 5.86462 6.31151 6.67579 7.25270 7.35861 7.78398 8.84664 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037821 B = 0.004862 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.150992 B = 5757.049854 C = 5791.874894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.100 0.900 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.129 4.129 8 C 0.165 3.835 9 H 0.055 0.945 10 N -0.720 5.720 11 C 0.691 3.309 12 O -0.651 6.651 13 N -0.726 5.726 14 C 0.287 3.713 15 C -0.554 4.554 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.987 3.013 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.256 1.256 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.029 0.971 34 H 0.405 0.595 35 H 0.403 0.597 36 H -0.016 1.016 37 H -0.017 1.017 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.142 11.636 18.440 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.118 0.882 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.168 4.168 8 C 0.060 3.940 9 H 0.073 0.927 10 N -0.378 5.378 11 C 0.391 3.609 12 O -0.533 6.533 13 N -0.379 5.379 14 C 0.163 3.837 15 C -0.592 4.592 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.810 3.190 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.179 1.179 23 H 0.095 0.905 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.242 0.758 35 H 0.238 0.762 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.394 12.066 17.308 21.370 hybrid contribution -0.385 -1.227 -0.215 1.304 sum 3.009 10.839 17.094 20.463 Atomic orbital electron populations 1.21813 0.94744 1.01801 1.02029 1.21386 0.95957 1.00227 0.93052 0.88232 1.21614 0.95647 1.00551 0.97225 1.21516 0.95379 1.01199 0.96860 1.21471 1.00282 0.99081 0.94490 1.21918 0.95316 1.01644 0.97950 1.20889 0.93534 0.80582 0.98976 0.92694 1.45038 1.71284 1.14992 1.06453 1.16354 0.78352 0.81705 0.84534 1.90822 1.59790 1.69732 1.33005 1.45301 1.69356 1.12004 1.11262 1.18374 0.93851 0.90489 0.80964 1.21597 1.45534 0.97227 0.94855 0.89883 1.26076 0.95137 1.04067 0.94309 1.70155 1.48607 1.38170 1.00104 0.85126 0.78457 0.76904 0.78512 1.19558 1.20925 1.17931 0.90469 0.93867 0.93395 0.92327 0.89575 0.90767 0.90848 0.91794 0.93347 0.89511 0.95213 0.75788 0.76230 0.99851 0.99908 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.04 71.98 0.65 -1.98 16 2 C -0.09 -1.52 2.51 -10.80 -0.03 -1.54 16 3 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 4 C -0.11 -1.56 5.03 30.59 0.15 -1.41 16 5 C -0.11 -1.58 5.92 30.60 0.18 -1.40 16 6 C -0.12 -2.35 5.77 30.59 0.18 -2.18 16 7 C -0.13 -3.26 5.61 30.61 0.17 -3.09 16 8 C 0.17 4.37 2.23 45.01 0.10 4.47 16 9 H 0.05 1.80 7.58 -2.39 -0.02 1.78 16 10 N -0.72 -21.82 3.55 -457.72 -1.62 -23.44 16 11 C 0.69 30.02 8.53 179.05 1.53 31.55 16 12 O -0.65 -34.99 16.01 -3.97 -0.06 -35.05 16 13 N -0.73 -32.56 5.55 -482.29 -2.68 -35.24 16 14 C 0.29 16.41 5.43 85.63 0.46 16.87 16 15 C -0.55 -30.87 9.28 25.60 0.24 -30.63 16 16 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 17 C 0.00 0.20 5.46 84.65 0.46 0.66 16 18 N -0.93 -57.26 13.29 21.44 0.28 -56.97 16 19 Si 0.99 42.86 29.54 68.60 2.03 44.88 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.95 7.44 -2.39 -0.02 0.94 16 26 H 0.06 0.86 6.51 -2.39 -0.02 0.85 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.13 7.61 -2.39 -0.02 1.11 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.40 9.77 6.67 -92.70 -0.62 9.15 16 35 H 0.40 14.96 8.34 -92.71 -0.77 14.19 16 36 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 37 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 38 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -73.47 303.65 1.70 -71.77 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.35 Total: 22.72 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 4.10 Total: 11.33 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -4.02 Total: -115.65 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.06 Total: -35.05 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -73.47 1.70 -71.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243959976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.809 kcal (2) G-P(sol) polarization free energy of solvation -73.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds