Wall clock time and date at job start Sun Mar 29 2020 22:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47452 * 2 1 4 4 C 1.53002 * 109.46972 * 239.99540 * 2 1 3 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47131 * 60.00459 * 5 4 2 7 7 C 1.52999 * 109.46991 * 299.99311 * 6 5 4 8 8 C 1.52997 * 109.47131 * 120.00000 * 2 1 3 9 9 H 1.09001 * 109.47289 * 299.99950 * 8 2 1 10 10 N 1.46500 * 109.47473 * 59.99623 * 8 2 1 11 11 C 1.34770 * 120.00256 * 205.00145 * 10 8 2 12 12 O 1.21592 * 120.00149 * 359.97438 * 11 10 8 13 13 N 1.34777 * 119.99883 * 180.02562 * 11 10 8 14 14 C 1.46507 * 120.00051 * 180.02562 * 13 11 10 15 15 C 1.50692 * 109.47445 * 179.97438 * 14 13 11 16 16 H 1.08009 * 119.99707 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00490 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00351 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99664 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47049 * 89.99989 * 19 17 15 21 21 H 1.48498 * 109.46996 * 210.00103 * 19 17 15 22 22 H 1.48504 * 109.46947 * 330.00284 * 19 17 15 23 23 H 1.09001 * 109.46997 * 300.00426 * 1 2 3 24 24 H 1.09000 * 109.47054 * 60.00160 * 1 2 3 25 25 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00487 * 4 2 1 27 27 H 1.09000 * 109.46986 * 60.00258 * 4 2 1 28 28 H 1.09001 * 109.46993 * 180.02562 * 5 4 2 29 29 H 1.09000 * 109.47380 * 299.99696 * 5 4 2 30 30 H 1.09002 * 109.47153 * 179.97438 * 6 5 4 31 31 H 1.08993 * 109.47194 * 60.00154 * 6 5 4 32 32 H 1.08993 * 109.47839 * 300.00447 * 7 6 5 33 33 H 1.09000 * 109.47160 * 180.02562 * 7 6 5 34 34 H 0.97005 * 119.99374 * 25.00210 * 10 8 2 35 35 H 0.96997 * 120.00470 * 359.97438 * 13 11 10 36 36 H 1.09005 * 109.46503 * 299.99994 * 14 13 11 37 37 H 1.09001 * 109.46970 * 59.98747 * 14 13 11 38 38 H 0.97000 * 120.00269 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7208 -1.2495 6 6 4.0804 -1.4417 -0.0003 7 6 3.5705 -0.7203 1.2489 8 6 2.0400 -0.7212 1.2492 9 1 1.6766 -0.2074 2.1392 10 7 1.5516 -2.1024 1.2493 11 6 1.4229 -2.7716 2.4121 12 8 1.7125 -2.2292 3.4610 13 7 0.9741 -4.0425 2.4121 14 6 0.8336 -4.7698 3.6761 15 6 0.3172 -6.1586 3.4018 16 1 0.1135 -6.4685 2.3874 17 6 0.1047 -7.0338 4.4458 18 7 -0.3464 -8.2457 4.2065 19 14 0.4576 -6.4981 6.2003 20 1 -0.7637 -5.8908 6.7875 21 1 0.8605 -7.6782 7.0066 22 1 1.5566 -5.4993 6.2012 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6766 -1.7490 -1.2492 27 1 1.6766 -0.2076 -2.1392 28 1 3.9332 -1.2343 -2.1397 29 1 3.9329 0.3070 -1.2499 30 1 5.1704 -1.4417 -0.0008 31 1 3.7175 -2.4694 -0.0001 32 1 3.9335 0.3074 1.2487 33 1 3.9346 -1.2336 2.1389 34 1 1.3209 -2.5353 0.4124 35 1 0.7434 -4.4754 1.5753 36 1 1.8040 -4.8331 4.1685 37 1 0.1320 -4.2425 4.3226 38 1 -0.4956 -8.8615 4.9409 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243959977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:54 Heat of formation + Delta-G solvation = -59.193927 kcal Electronic energy + Delta-G solvation = -17769.363404 eV Core-core repulsion = 15031.575305 eV Total energy + Delta-G solvation = -2737.788099 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.11192 -38.11408 -34.21950 -33.37787 -32.55362 -32.23155 -29.89711 -27.60558 -26.17052 -22.87324 -22.04822 -21.44749 -20.46722 -19.00096 -18.25574 -16.39582 -15.78567 -15.38176 -15.03802 -14.47108 -14.36113 -14.06597 -13.81018 -13.41632 -13.06827 -12.84670 -12.37287 -12.32599 -12.09827 -11.97850 -11.68996 -11.57669 -11.00941 -10.92443 -10.73826 -10.61123 -10.34547 -10.02638 -9.92734 -9.51089 -9.40328 -8.75835 -8.67659 -7.94240 -6.17798 -4.19293 3.29651 3.34281 3.41275 3.46364 3.89414 4.37355 4.55071 4.62023 4.68903 4.99393 5.04745 5.13191 5.18049 5.32256 5.38527 5.40696 5.53065 5.55743 5.71477 5.75254 5.85614 5.95180 6.00572 6.11658 6.19048 6.22016 6.32857 6.36757 6.80590 6.95267 7.16659 7.30914 7.47495 7.65994 8.33088 8.74830 8.87729 9.29769 9.45200 10.94273 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038473 B = 0.005166 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.599291 B = 5418.287940 C = 5461.040545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.132 4.132 8 C 0.171 3.829 9 H 0.085 0.915 10 N -0.745 5.745 11 C 0.695 3.305 12 O -0.605 6.605 13 N -0.725 5.725 14 C 0.239 3.761 15 C -0.541 4.541 16 H 0.078 0.922 17 C 0.077 3.923 18 N -0.894 5.894 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.390 0.610 35 H 0.391 0.609 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 15.961 -11.739 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.171 4.171 8 C 0.065 3.935 9 H 0.103 0.897 10 N -0.402 5.402 11 C 0.395 3.605 12 O -0.485 6.485 13 N -0.377 5.377 14 C 0.116 3.884 15 C -0.579 4.579 16 H 0.096 0.904 17 C -0.126 4.126 18 N -0.532 5.532 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.184 1.184 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.225 0.775 35 H 0.224 0.776 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.505 16.249 -10.638 20.187 hybrid contribution -0.097 -0.353 0.143 0.393 sum 5.408 15.896 -10.495 19.801 Atomic orbital electron populations 1.21811 0.94733 1.02371 1.01505 1.21418 0.96074 0.99680 0.94519 0.90116 1.21597 0.95695 1.00682 0.97310 1.21541 0.95469 1.00628 0.97961 1.21485 0.99890 0.99961 0.94230 1.21956 0.95916 1.00603 0.98592 1.20679 0.92952 0.81827 0.97998 0.89728 1.45222 1.72675 1.14603 1.07740 1.16140 0.78716 0.81893 0.83791 1.90849 1.58103 1.68867 1.30676 1.45391 1.68936 1.11562 1.11801 1.19329 0.96525 0.91206 0.81323 1.21107 1.45423 0.95284 0.96092 0.90356 1.24778 0.94020 0.94555 0.99263 1.69880 1.44787 1.05916 1.32603 0.86813 0.79838 0.78629 0.84395 1.19872 1.20972 1.18443 0.92541 0.92828 0.92280 0.91961 0.91892 0.92200 0.92145 0.92373 0.91714 0.91647 0.91164 0.77527 0.77626 0.96007 0.96473 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.04 37.16 0.34 -1.08 16 2 C -0.10 -0.93 2.51 -90.62 -0.23 -1.15 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -0.98 5.03 -26.73 -0.13 -1.11 16 5 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 6 C -0.12 -1.24 5.77 -26.73 -0.15 -1.40 16 7 C -0.13 -1.59 5.61 -26.70 -0.15 -1.74 16 8 C 0.17 2.17 2.23 -67.90 -0.15 2.02 16 9 H 0.08 1.26 7.58 -51.93 -0.39 0.86 16 10 N -0.75 -10.76 3.55 -58.65 -0.21 -10.97 16 11 C 0.69 13.82 8.53 -86.92 -0.74 13.08 16 12 O -0.61 -14.44 16.01 5.29 0.08 -14.35 16 13 N -0.72 -15.19 5.55 -66.41 -0.37 -15.56 16 14 C 0.24 6.05 4.50 -5.19 -0.02 6.03 16 15 C -0.54 -15.08 9.83 -34.44 -0.34 -15.42 16 16 H 0.08 2.27 7.84 -52.48 -0.41 1.85 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 18 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 19 Si 0.88 21.80 27.47 -169.99 -4.67 17.14 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.62 7.44 -51.93 -0.39 0.23 16 26 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.77 7.61 -51.93 -0.39 0.37 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.39 4.76 6.67 -40.82 -0.27 4.48 16 35 H 0.39 7.22 8.34 -40.82 -0.34 6.88 16 36 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 37 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -32.06 300.05 -7.98 -40.04 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.28 Total: 5.07 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.84 Total: 0.17 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.20 Total: -52.59 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.08 Total: -14.35 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.06 -7.98 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243959977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.150 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds