Wall clock time and date at job start Sun Mar 29 2020 22:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.50102 * 2 1 4 4 C 1.53036 * 109.49850 * 239.93125 * 2 1 3 5 5 C 1.53036 * 109.53913 * 178.68601 * 4 2 1 6 6 H 1.09006 * 109.49614 * 301.40991 * 5 4 2 7 7 C 1.53005 * 109.50008 * 181.31863 * 5 4 2 8 8 C 1.53187 * 109.31715 * 61.36773 * 5 4 2 9 9 N 1.46932 * 108.77133 * 305.36553 * 8 5 4 10 10 C 1.34778 * 120.63051 * 233.58613 * 9 8 5 11 11 O 1.21586 * 120.00021 * 185.02536 * 10 9 8 12 12 N 1.34775 * 119.99817 * 4.74739 * 10 9 8 13 13 C 1.46507 * 120.00024 * 175.20268 * 12 10 9 14 14 C 1.50693 * 109.47225 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00249 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00211 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00361 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99578 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46943 * 90.00040 * 18 16 14 20 20 H 1.48503 * 109.46697 * 210.00132 * 18 16 14 21 21 H 1.48493 * 109.47024 * 330.00122 * 18 16 14 22 22 C 1.46922 * 118.74089 * 53.86074 * 9 8 5 23 23 H 1.09004 * 109.47398 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47094 * 300.06700 * 1 2 3 25 25 H 1.09003 * 109.47307 * 60.06875 * 1 2 3 26 26 H 1.09003 * 109.46045 * 58.65980 * 4 2 1 27 27 H 1.09003 * 109.45060 * 298.70244 * 4 2 1 28 28 H 1.08998 * 109.46857 * 300.16274 * 7 5 4 29 29 H 1.09006 * 109.47156 * 60.15463 * 7 5 4 30 30 H 1.08996 * 109.47317 * 180.16066 * 7 5 4 31 31 H 1.08996 * 109.59049 * 185.58349 * 8 5 4 32 32 H 1.08991 * 109.58878 * 65.14671 * 8 5 4 33 33 H 0.97002 * 120.00445 * 355.21036 * 12 10 9 34 34 H 1.09000 * 109.47128 * 300.00363 * 13 12 10 35 35 H 1.08997 * 109.46697 * 59.99902 * 13 12 10 36 36 H 0.97001 * 120.00240 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.58824 * 65.92383 * 22 9 8 38 38 H 1.08996 * 109.58841 * 186.35555 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 3.5708 -0.6948 -1.2661 6 1 3.9159 0.3391 -1.2540 7 6 4.0798 -1.3888 -2.5311 8 6 4.1052 -1.4268 -0.0311 9 7 3.5045 -0.8294 1.1694 10 6 4.2810 -0.3869 2.1782 11 8 3.7712 0.0210 3.2039 12 7 5.6228 -0.4019 2.0523 13 6 6.4638 0.1752 3.1039 14 6 7.9145 0.0323 2.7221 15 1 8.1833 -0.4415 1.7895 16 6 8.8988 0.5054 3.5637 17 7 10.1649 0.3812 3.2303 18 14 8.4339 1.3243 5.1771 19 1 8.3573 0.2990 6.2485 20 1 9.4612 2.3361 5.5326 21 1 7.1138 1.9888 5.0325 22 6 2.0411 -0.7292 1.2519 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5149 0.8894 25 1 -0.3634 0.5128 -0.8906 26 1 1.6581 -0.2240 -2.1389 27 1 1.6966 -1.7570 -1.2355 28 1 3.7330 -2.4221 -2.5431 29 1 3.6992 -0.8677 -3.4096 30 1 5.1695 -1.3712 -2.5418 31 1 5.1895 -1.3246 0.0135 32 1 3.8374 -2.4818 -0.0873 33 1 6.0318 -0.7948 1.2653 34 1 6.2223 1.2314 3.2236 35 1 6.2815 -0.3477 4.0427 36 1 10.8573 0.7143 3.8223 37 1 1.6084 -1.7286 1.2982 38 1 1.7630 -0.1668 2.1431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000244471853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:32 Heat of formation + Delta-G solvation = -45.872312 kcal Electronic energy + Delta-G solvation = -17750.976272 eV Core-core repulsion = 15013.765841 eV Total energy + Delta-G solvation = -2737.210431 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.07372 -37.76122 -34.47086 -33.62881 -33.30182 -32.17480 -28.09136 -26.81496 -26.62545 -25.02680 -21.99744 -20.87622 -20.32691 -19.27970 -17.97327 -16.41018 -15.93031 -15.25022 -14.89984 -14.80429 -14.42991 -13.98536 -13.46235 -13.27954 -12.99614 -12.75517 -12.55305 -12.39474 -12.21118 -11.98750 -11.81689 -11.69424 -10.95936 -10.92320 -10.85933 -10.72444 -10.60872 -10.37367 -9.93662 -9.47170 -9.41963 -8.74861 -8.45723 -7.90161 -6.18400 -4.19996 3.15031 3.30260 3.36973 3.45927 3.79536 4.36672 4.45606 4.66688 4.73124 4.74919 4.88010 5.17405 5.20058 5.29595 5.39420 5.46153 5.49060 5.58348 5.62269 5.70639 5.75107 5.82927 5.93141 5.98062 6.06711 6.12125 6.16866 6.36630 6.70040 6.88388 7.15522 7.29409 7.44119 7.56111 8.29077 8.70320 8.82770 9.23700 9.43674 10.93613 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.005761 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.122935 B = 4859.498400 C = 5519.654142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.074 0.926 4 C -0.106 4.106 5 C -0.109 4.109 6 H 0.076 0.924 7 C -0.145 4.145 8 C 0.117 3.883 9 N -0.637 5.637 10 C 0.699 3.301 11 O -0.603 6.603 12 N -0.723 5.723 13 C 0.237 3.763 14 C -0.541 4.541 15 H 0.078 0.922 16 C 0.078 3.922 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.260 1.260 22 C 0.137 3.863 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.391 0.609 34 H 0.022 0.978 35 H 0.019 0.981 36 H 0.267 0.733 37 H 0.058 0.942 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.156 -3.401 -10.923 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 H 0.092 0.908 4 C -0.143 4.143 5 C -0.128 4.128 6 H 0.094 0.906 7 C -0.203 4.203 8 C -0.007 4.007 9 N -0.375 5.375 10 C 0.400 3.600 11 O -0.482 6.482 12 N -0.378 5.378 13 C 0.114 3.886 14 C -0.579 4.579 15 H 0.096 0.904 16 C -0.126 4.126 17 N -0.531 5.531 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.185 1.185 22 C 0.013 3.987 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.227 0.773 34 H 0.040 0.960 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.274 -3.035 -10.065 19.374 hybrid contribution 0.206 0.208 0.369 0.471 sum -16.068 -2.827 -9.696 18.979 Atomic orbital electron populations 1.21748 0.94657 1.01837 1.01868 1.21628 0.95605 1.00364 0.95311 0.90775 1.21623 0.94706 1.00616 0.97397 1.21531 0.95886 1.00741 0.94688 0.90577 1.21771 1.01474 1.00388 0.96661 1.21651 0.98262 0.96624 0.84148 1.47255 1.06154 1.65899 1.18211 1.16031 0.82185 0.78803 0.82972 1.90841 1.73656 1.55185 1.28563 1.45571 1.03444 1.63340 1.25429 1.19362 0.89449 0.93423 0.86329 1.21086 0.88077 1.40879 1.07870 0.90386 1.24771 0.94637 0.95027 0.98128 1.69878 0.99422 1.46121 1.37702 0.86811 0.79033 0.79967 0.83853 1.19836 1.20952 1.18476 1.21494 0.78844 0.99933 0.98439 0.92610 0.92400 0.92573 0.91925 0.91888 0.92583 0.92497 0.92146 0.90019 0.91746 0.77278 0.96045 0.96303 0.92299 0.92337 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.20 37.16 0.34 -0.89 16 2 C -0.11 -1.18 2.89 -90.27 -0.26 -1.44 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -1.00 4.45 -26.69 -0.12 -1.12 16 5 C -0.11 -1.15 2.87 -90.50 -0.26 -1.41 16 6 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 7 C -0.15 -1.25 9.20 37.16 0.34 -0.91 16 8 C 0.12 1.47 5.71 -3.71 -0.02 1.45 16 9 N -0.64 -10.14 2.97 -178.24 -0.53 -10.67 16 10 C 0.70 14.66 8.30 -86.92 -0.72 13.94 16 11 O -0.60 -14.85 15.78 5.29 0.08 -14.77 16 12 N -0.72 -15.70 5.46 -66.41 -0.36 -16.07 16 13 C 0.24 6.07 4.50 -5.19 -0.02 6.05 16 14 C -0.54 -15.14 9.83 -34.44 -0.34 -15.48 16 15 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 16 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 17 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 18 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 22 C 0.14 1.84 5.73 -3.48 -0.02 1.82 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.07 5.57 -51.93 -0.29 0.78 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.39 7.56 5.78 -40.82 -0.24 7.32 16 34 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.41 7.03 -51.93 -0.37 1.05 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -32.39 301.53 -7.65 -40.03 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.31 Total: 1.61 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.18 Total: 4.16 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.12 Total: -52.74 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.08 Total: -14.77 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.39 -7.65 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244471853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.841 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds