Wall clock time and date at job start Sun Mar 29 2020 22:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.50102 * 2 1 4 4 C 1.53036 * 109.49850 * 239.93125 * 2 1 3 5 5 C 1.53036 * 109.53913 * 178.68601 * 4 2 1 6 6 H 1.09006 * 109.49614 * 301.40991 * 5 4 2 7 7 C 1.53005 * 109.50008 * 181.31863 * 5 4 2 8 8 C 1.53187 * 109.31715 * 61.36773 * 5 4 2 9 9 N 1.46932 * 108.77133 * 305.36553 * 8 5 4 10 10 C 1.34778 * 120.63051 * 233.58613 * 9 8 5 11 11 O 1.21586 * 120.00021 * 185.02536 * 10 9 8 12 12 N 1.34775 * 119.99817 * 4.74739 * 10 9 8 13 13 C 1.46507 * 120.00024 * 175.20268 * 12 10 9 14 14 C 1.50693 * 109.47225 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00249 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00211 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00361 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99578 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46943 * 90.00040 * 18 16 14 20 20 H 1.48503 * 109.46697 * 210.00132 * 18 16 14 21 21 H 1.48493 * 109.47024 * 330.00122 * 18 16 14 22 22 C 1.46922 * 118.74089 * 53.86074 * 9 8 5 23 23 H 1.09004 * 109.47398 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47094 * 300.06700 * 1 2 3 25 25 H 1.09003 * 109.47307 * 60.06875 * 1 2 3 26 26 H 1.09003 * 109.46045 * 58.65980 * 4 2 1 27 27 H 1.09003 * 109.45060 * 298.70244 * 4 2 1 28 28 H 1.08998 * 109.46857 * 300.16274 * 7 5 4 29 29 H 1.09006 * 109.47156 * 60.15463 * 7 5 4 30 30 H 1.08996 * 109.47317 * 180.16066 * 7 5 4 31 31 H 1.08996 * 109.59049 * 185.58349 * 8 5 4 32 32 H 1.08991 * 109.58878 * 65.14671 * 8 5 4 33 33 H 0.97002 * 120.00445 * 355.21036 * 12 10 9 34 34 H 1.09000 * 109.47128 * 300.00363 * 13 12 10 35 35 H 1.08997 * 109.46697 * 59.99902 * 13 12 10 36 36 H 0.97001 * 120.00240 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.58824 * 65.92383 * 22 9 8 38 38 H 1.08996 * 109.58841 * 186.35555 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 3.5708 -0.6948 -1.2661 6 1 3.9159 0.3391 -1.2540 7 6 4.0798 -1.3888 -2.5311 8 6 4.1052 -1.4268 -0.0311 9 7 3.5045 -0.8294 1.1694 10 6 4.2810 -0.3869 2.1782 11 8 3.7712 0.0210 3.2039 12 7 5.6228 -0.4019 2.0523 13 6 6.4638 0.1752 3.1039 14 6 7.9145 0.0323 2.7221 15 1 8.1833 -0.4415 1.7895 16 6 8.8988 0.5054 3.5637 17 7 10.1649 0.3812 3.2303 18 14 8.4339 1.3243 5.1771 19 1 8.3573 0.2990 6.2485 20 1 9.4612 2.3361 5.5326 21 1 7.1138 1.9888 5.0325 22 6 2.0411 -0.7292 1.2519 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5149 0.8894 25 1 -0.3634 0.5128 -0.8906 26 1 1.6581 -0.2240 -2.1389 27 1 1.6966 -1.7570 -1.2355 28 1 3.7330 -2.4221 -2.5431 29 1 3.6992 -0.8677 -3.4096 30 1 5.1695 -1.3712 -2.5418 31 1 5.1895 -1.3246 0.0135 32 1 3.8374 -2.4818 -0.0873 33 1 6.0318 -0.7948 1.2653 34 1 6.2223 1.2314 3.2236 35 1 6.2815 -0.3477 4.0427 36 1 10.8573 0.7143 3.8223 37 1 1.6084 -1.7286 1.2982 38 1 1.7630 -0.1668 2.1431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000244471853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:32 Heat of formation + Delta-G solvation = -67.291423 kcal Electronic energy + Delta-G solvation = -17751.905074 eV Core-core repulsion = 15013.765841 eV Total energy + Delta-G solvation = -2738.139233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.46565 -39.05120 -36.28964 -34.95984 -34.38998 -34.09140 -30.01057 -27.67031 -27.52349 -26.34632 -23.94409 -21.78358 -21.57337 -20.67940 -19.51354 -18.40240 -17.43184 -16.61537 -16.42404 -15.90281 -15.82393 -15.37067 -15.00024 -14.77125 -14.46109 -13.91099 -13.87351 -13.68612 -13.21613 -13.11042 -12.86963 -12.80497 -12.70662 -12.46349 -11.93886 -11.83618 -11.77498 -11.64631 -11.50473 -11.26938 -11.07698 -10.92569 -10.12846 -9.40760 -8.40741 -6.47662 1.32727 1.34254 1.48008 1.74537 2.14309 2.28220 2.94685 3.08138 3.71101 3.84443 3.87143 3.96936 4.30366 4.37369 4.49943 4.62554 4.65349 4.74195 4.74841 4.85019 4.86477 4.92493 5.02770 5.06530 5.09583 5.21621 5.24030 5.30799 5.34674 5.39864 5.52235 5.55105 5.62759 5.94034 6.19106 6.53034 7.06525 7.18148 7.60499 8.74009 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.005761 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.122935 B = 4859.498400 C = 5519.654142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.053 0.947 4 C -0.100 4.100 5 C -0.105 4.105 6 H 0.056 0.944 7 C -0.140 4.140 8 C 0.110 3.890 9 N -0.628 5.628 10 C 0.694 3.306 11 O -0.644 6.644 12 N -0.724 5.724 13 C 0.251 3.749 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.030 3.970 17 N -0.929 5.929 18 Si 0.937 3.063 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.263 1.263 22 C 0.131 3.869 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.402 0.598 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.273 0.727 37 H 0.081 0.919 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.799 -4.023 -12.024 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 H 0.072 0.928 4 C -0.138 4.138 5 C -0.124 4.124 6 H 0.075 0.925 7 C -0.198 4.198 8 C -0.013 4.013 9 N -0.365 5.365 10 C 0.395 3.605 11 O -0.527 6.527 12 N -0.380 5.380 13 C 0.127 3.873 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.171 4.171 17 N -0.568 5.568 18 Si 0.761 3.239 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.188 1.188 22 C 0.008 3.992 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.240 0.760 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.941 -3.685 -11.232 21.486 hybrid contribution 0.694 0.352 0.622 0.997 sum -17.247 -3.333 -10.610 20.522 Atomic orbital electron populations 1.21715 0.92587 1.02926 1.02350 1.21573 0.97212 0.98941 0.94590 0.92826 1.21617 0.93462 1.01574 0.97106 1.21492 0.96942 0.99530 0.94470 0.92524 1.21734 1.01126 1.01110 0.95796 1.21949 0.97736 0.98012 0.83563 1.47342 1.06903 1.64473 1.17768 1.16192 0.81958 0.78782 0.83561 1.90802 1.74263 1.57060 1.30625 1.45322 1.03834 1.63690 1.25112 1.18957 0.88693 0.92707 0.86970 1.21232 0.89407 1.40514 1.07229 0.92370 1.25547 0.94524 0.95567 1.01438 1.69968 1.00435 1.47192 1.39220 0.85864 0.78757 0.79383 0.79926 1.18916 1.19524 1.18751 1.21742 0.77258 1.01208 0.98984 0.91185 0.92985 0.91110 0.90152 0.90217 0.91147 0.91269 0.92757 0.91036 0.89386 0.76016 0.97370 0.97380 0.91754 0.90101 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.20 71.98 0.66 -1.34 16 2 C -0.10 -2.04 2.89 -10.57 -0.03 -2.07 16 3 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.10 -1.56 4.45 30.62 0.14 -1.43 16 5 C -0.10 -1.99 2.87 -10.72 -0.03 -2.02 16 6 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 7 C -0.14 -2.01 9.20 71.98 0.66 -1.35 16 8 C 0.11 2.60 5.71 86.36 0.49 3.09 16 9 N -0.63 -19.63 2.97 -836.08 -2.48 -22.11 16 10 C 0.69 29.45 8.30 179.05 1.49 30.94 16 11 O -0.64 -32.44 15.78 -3.99 -0.06 -32.51 16 12 N -0.72 -31.92 5.46 -482.30 -2.63 -34.56 16 13 C 0.25 13.06 4.50 85.63 0.39 13.45 16 14 C -0.55 -31.07 9.83 25.60 0.25 -30.82 16 15 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 16 C 0.03 1.71 5.47 84.66 0.46 2.18 16 17 N -0.93 -56.06 13.96 21.45 0.30 -55.76 16 18 Si 0.94 45.09 27.47 68.60 1.88 46.98 16 19 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.26 -12.70 6.54 99.48 0.65 -12.05 16 22 C 0.13 3.39 5.73 86.51 0.50 3.88 16 23 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.83 5.57 -2.39 -0.01 1.82 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.40 15.77 5.78 -92.71 -0.54 15.23 16 34 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 35 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 2.04 7.03 -2.39 -0.02 2.02 16 Total: -1.00 -70.29 301.53 2.42 -67.87 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.44 Total: 15.57 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 4.97 Total: 14.51 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.81 Total: -112.43 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.06 Total: -32.51 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Total: -70.29 2.42 -67.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244471853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.579 kcal (2) G-P(sol) polarization free energy of solvation -70.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds