Wall clock time and date at job start Sun Mar 29 2020 22:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47486 * 2 1 4 4 C 1.50702 * 109.47318 * 239.99610 * 2 1 3 5 5 O 1.21293 * 120.00280 * 274.61233 * 4 2 1 6 6 N 1.34772 * 119.99669 * 94.60590 * 4 2 1 7 7 C 1.37104 * 120.00042 * 180.02562 * 6 4 2 8 8 H 1.08002 * 119.99583 * 359.97438 * 7 6 4 9 9 C 1.38944 * 119.99979 * 180.02562 * 7 6 4 10 10 N 1.31405 * 120.00336 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99828 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47023 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47108 * 119.99618 * 11 9 7 14 14 H 1.48501 * 109.47306 * 239.99651 * 11 9 7 15 15 N 1.46901 * 109.46746 * 120.00181 * 2 1 3 16 16 C 1.48536 * 111.00045 * 190.67024 * 15 2 1 17 17 H 1.09002 * 110.66513 * 41.27971 * 16 15 2 18 18 C 1.53004 * 110.66285 * 278.15385 * 16 15 2 19 19 C 1.54938 * 103.22855 * 159.71954 * 16 15 2 20 20 C 1.54595 * 102.91969 * 322.58409 * 19 16 15 21 21 C 1.47905 * 111.00086 * 308.06143 * 15 2 1 22 22 H 1.09002 * 109.91421 * 333.51284 * 21 15 2 23 23 C 1.53005 * 109.91608 * 94.80459 * 21 15 2 24 24 H 1.09005 * 109.47484 * 185.90573 * 1 2 3 25 25 H 1.09000 * 109.47277 * 305.91002 * 1 2 3 26 26 H 1.09005 * 109.46931 * 65.90680 * 1 2 3 27 27 H 0.96995 * 120.00472 * 0.02562 * 6 4 2 28 28 H 0.97004 * 120.00642 * 180.02562 * 10 9 7 29 29 H 1.08998 * 109.47407 * 68.32062 * 18 16 15 30 30 H 1.09005 * 109.46764 * 188.31762 * 18 16 15 31 31 H 1.08999 * 109.47020 * 308.31632 * 18 16 15 32 32 H 1.08995 * 110.72093 * 204.22363 * 19 16 15 33 33 H 1.09001 * 110.72131 * 80.94649 * 19 16 15 34 34 H 1.09000 * 110.30877 * 263.04255 * 20 19 16 35 35 H 1.09001 * 110.30450 * 140.87700 * 20 19 16 36 36 H 1.08999 * 109.46921 * 53.47229 * 23 21 15 37 37 H 1.08993 * 109.47366 * 173.47209 * 23 21 15 38 38 H 1.09000 * 109.46581 * 293.47674 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.1549 -1.9172 -1.2264 6 7 2.3453 -0.0050 -2.3353 7 6 2.8019 -0.6514 -3.4549 8 1 2.9111 -1.7258 -3.4512 9 6 3.1251 0.0760 -4.5937 10 7 2.9927 1.3834 -4.5980 11 14 3.7478 -0.8046 -6.1189 12 1 3.8057 -2.2654 -5.8581 13 1 2.8266 -0.5410 -7.2535 14 1 5.1055 -0.3076 -6.4579 15 7 2.0195 -0.6925 1.1994 16 6 3.4818 -0.4941 1.3692 17 1 3.7590 0.5356 1.1430 18 6 4.2649 -1.4713 0.4901 19 6 3.7100 -0.8049 2.8698 20 6 2.4488 -0.2141 3.5408 21 6 1.3936 -0.1428 2.4216 22 1 1.0993 0.8933 2.2541 23 6 0.1715 -0.9805 2.8032 24 1 -0.3634 -1.0222 0.1057 25 1 -0.3634 0.6027 0.8323 26 1 -0.3633 0.4195 -0.9382 27 1 2.2476 0.9600 -2.3384 28 1 3.2179 1.8912 -5.3932 29 1 4.1209 -1.2121 -0.5588 30 1 5.3251 -1.4123 0.7367 31 1 3.9068 -2.4856 0.6662 32 1 4.6093 -0.3084 3.2341 33 1 3.7676 -1.8806 3.0364 34 1 2.6580 0.7833 3.9276 35 1 2.1058 -0.8675 4.3430 36 1 0.4584 -2.0296 2.8758 37 1 -0.2151 -0.6422 3.7645 38 1 -0.5994 -0.8666 2.0410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245704392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:44 Heat of formation + Delta-G solvation = -36.981874 kcal Electronic energy + Delta-G solvation = -18395.941112 eV Core-core repulsion = 15659.116200 eV Total energy + Delta-G solvation = -2736.824913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.71969 -37.57408 -33.90712 -33.23209 -32.17833 -31.06873 -28.56046 -27.87143 -25.28923 -23.65992 -22.82298 -20.16168 -19.72433 -18.90119 -17.81644 -16.27090 -15.77369 -14.78931 -14.53126 -14.38931 -13.85730 -13.72120 -13.16028 -12.86532 -12.61329 -12.50768 -11.97031 -11.87190 -11.68387 -11.50790 -11.35507 -11.11876 -11.08270 -11.04776 -10.58079 -10.40243 -10.36382 -10.31605 -10.18433 -10.07290 -9.39218 -8.31837 -7.89644 -7.86152 -6.37511 -3.78053 3.18437 3.28804 3.36066 3.87874 4.13927 4.29747 4.76050 4.84442 5.04720 5.16386 5.27898 5.37206 5.56132 5.60001 5.61569 5.68149 5.83414 5.88609 5.90043 5.95568 6.04724 6.06373 6.12200 6.19261 6.31575 6.38304 6.40886 6.52043 6.60898 6.69965 7.06408 7.39762 7.45288 7.59117 8.11895 8.68053 9.23523 9.60821 10.13782 10.80533 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037573 B = 0.006534 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.030619 B = 4283.923407 C = 4592.053157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.065 3.935 3 H 0.044 0.956 4 C 0.456 3.544 5 O -0.569 6.569 6 N -0.568 5.568 7 C -0.295 4.295 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.927 3.073 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 N -0.481 5.481 16 C 0.065 3.935 17 H 0.046 0.954 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.126 4.126 21 C 0.061 3.939 22 H 0.048 0.952 23 C -0.140 4.140 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.390 0.610 28 H 0.270 0.730 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 0.890 13.121 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 H 0.061 0.939 4 C 0.241 3.759 5 O -0.452 6.452 6 N -0.206 5.206 7 C -0.425 4.425 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.545 5.545 11 Si 0.754 3.246 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 N -0.207 5.207 16 C -0.043 4.043 17 H 0.064 0.936 18 C -0.192 4.192 19 C -0.156 4.156 20 C -0.164 4.164 21 C -0.048 4.048 22 H 0.066 0.934 23 C -0.198 4.198 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.223 0.777 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.832 -0.356 12.883 13.017 hybrid contribution 0.435 1.287 -0.816 1.584 sum -1.397 0.931 12.067 12.183 Atomic orbital electron populations 1.21908 0.93355 1.02840 1.01544 1.21657 0.96450 0.95152 0.91427 0.93858 1.19538 0.84063 0.88139 0.84185 1.90526 1.57288 1.13945 1.83408 1.41952 1.57945 1.09496 1.11165 1.19733 1.39368 0.94084 0.89327 0.87915 1.25232 0.97909 0.95485 0.99374 1.69621 1.49212 1.05399 1.30292 0.85836 0.78183 0.79607 0.80941 1.19241 1.20825 1.20831 1.64583 1.03522 1.52683 0.99894 1.22755 0.88548 0.98017 0.94961 0.93642 1.21790 0.96683 0.99729 1.01005 1.22520 0.96931 1.01524 0.94600 1.22456 0.95527 1.00715 0.97737 1.22337 0.95194 0.96825 0.90401 0.93394 1.21971 0.96925 1.00699 1.00209 0.91045 0.92496 0.91968 0.77698 0.92032 0.90710 0.93950 0.91643 0.91579 0.90748 0.91961 0.91125 0.91887 0.93198 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 7.60 37.16 0.28 -2.00 16 2 C 0.07 1.24 2.23 -68.86 -0.15 1.09 16 3 H 0.04 0.79 7.85 -51.93 -0.41 0.39 16 4 C 0.46 10.86 4.68 -10.99 -0.05 10.81 16 5 O -0.57 -15.39 14.39 5.55 0.08 -15.31 16 6 N -0.57 -14.55 5.29 -10.96 -0.06 -14.60 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 11 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 N -0.48 -8.39 4.28 -208.31 -0.89 -9.28 16 16 C 0.07 1.09 2.87 -65.78 -0.19 0.91 16 17 H 0.05 0.77 7.84 -51.93 -0.41 0.37 16 18 C -0.13 -2.55 8.10 37.16 0.30 -2.25 16 19 C -0.12 -1.56 6.50 -24.87 -0.16 -1.72 16 20 C -0.13 -1.50 6.57 -25.38 -0.17 -1.67 16 21 C 0.06 0.84 2.46 -66.64 -0.16 0.68 16 22 H 0.05 0.65 7.09 -51.93 -0.37 0.28 16 23 C -0.14 -1.76 8.86 37.16 0.33 -1.43 16 24 H 0.07 1.24 7.37 -51.93 -0.38 0.85 16 25 H 0.06 0.77 6.02 -51.93 -0.31 0.46 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.39 9.73 7.88 -40.82 -0.32 9.41 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.07 1.71 5.46 -51.93 -0.28 1.42 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.31 8.11 -51.93 -0.42 0.89 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.00 8.05 -51.93 -0.42 0.58 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.80 5.19 -51.93 -0.27 0.53 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -30.05 295.79 -6.96 -37.02 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.04 Total: 9.13 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.21 Total: -3.51 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.22 Total: -47.99 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.08 Total: -15.31 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.05 -6.96 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245704392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.036 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds