Wall clock time and date at job start Sun Mar 29 2020 22:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47486 * 2 1 4 4 C 1.50702 * 109.47318 * 239.99610 * 2 1 3 5 5 O 1.21293 * 120.00280 * 274.61233 * 4 2 1 6 6 N 1.34772 * 119.99669 * 94.60590 * 4 2 1 7 7 C 1.37104 * 120.00042 * 180.02562 * 6 4 2 8 8 H 1.08002 * 119.99583 * 359.97438 * 7 6 4 9 9 C 1.38944 * 119.99979 * 180.02562 * 7 6 4 10 10 N 1.31405 * 120.00336 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99828 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47023 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47108 * 119.99618 * 11 9 7 14 14 H 1.48501 * 109.47306 * 239.99651 * 11 9 7 15 15 N 1.46901 * 109.46746 * 120.00181 * 2 1 3 16 16 C 1.48536 * 111.00045 * 190.67024 * 15 2 1 17 17 H 1.09002 * 110.66513 * 41.27971 * 16 15 2 18 18 C 1.53004 * 110.66285 * 278.15385 * 16 15 2 19 19 C 1.54938 * 103.22855 * 159.71954 * 16 15 2 20 20 C 1.54595 * 102.91969 * 322.58409 * 19 16 15 21 21 C 1.47905 * 111.00086 * 308.06143 * 15 2 1 22 22 H 1.09002 * 109.91421 * 333.51284 * 21 15 2 23 23 C 1.53005 * 109.91608 * 94.80459 * 21 15 2 24 24 H 1.09005 * 109.47484 * 185.90573 * 1 2 3 25 25 H 1.09000 * 109.47277 * 305.91002 * 1 2 3 26 26 H 1.09005 * 109.46931 * 65.90680 * 1 2 3 27 27 H 0.96995 * 120.00472 * 0.02562 * 6 4 2 28 28 H 0.97004 * 120.00642 * 180.02562 * 10 9 7 29 29 H 1.08998 * 109.47407 * 68.32062 * 18 16 15 30 30 H 1.09005 * 109.46764 * 188.31762 * 18 16 15 31 31 H 1.08999 * 109.47020 * 308.31632 * 18 16 15 32 32 H 1.08995 * 110.72093 * 204.22363 * 19 16 15 33 33 H 1.09001 * 110.72131 * 80.94649 * 19 16 15 34 34 H 1.09000 * 110.30877 * 263.04255 * 20 19 16 35 35 H 1.09001 * 110.30450 * 140.87700 * 20 19 16 36 36 H 1.08999 * 109.46921 * 53.47229 * 23 21 15 37 37 H 1.08993 * 109.47366 * 173.47209 * 23 21 15 38 38 H 1.09000 * 109.46581 * 293.47674 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.1549 -1.9172 -1.2264 6 7 2.3453 -0.0050 -2.3353 7 6 2.8019 -0.6514 -3.4549 8 1 2.9111 -1.7258 -3.4512 9 6 3.1251 0.0760 -4.5937 10 7 2.9927 1.3834 -4.5980 11 14 3.7478 -0.8046 -6.1189 12 1 3.8057 -2.2654 -5.8581 13 1 2.8266 -0.5410 -7.2535 14 1 5.1055 -0.3076 -6.4579 15 7 2.0195 -0.6925 1.1994 16 6 3.4818 -0.4941 1.3692 17 1 3.7590 0.5356 1.1430 18 6 4.2649 -1.4713 0.4901 19 6 3.7100 -0.8049 2.8698 20 6 2.4488 -0.2141 3.5408 21 6 1.3936 -0.1428 2.4216 22 1 1.0993 0.8933 2.2541 23 6 0.1715 -0.9805 2.8032 24 1 -0.3634 -1.0222 0.1057 25 1 -0.3634 0.6027 0.8323 26 1 -0.3633 0.4195 -0.9382 27 1 2.2476 0.9600 -2.3384 28 1 3.2179 1.8912 -5.3932 29 1 4.1209 -1.2121 -0.5588 30 1 5.3251 -1.4123 0.7367 31 1 3.9068 -2.4856 0.6662 32 1 4.6093 -0.3084 3.2341 33 1 3.7676 -1.8806 3.0364 34 1 2.6580 0.7833 3.9276 35 1 2.1058 -0.8675 4.3430 36 1 0.4584 -2.0296 2.8758 37 1 -0.2151 -0.6422 3.7645 38 1 -0.5994 -0.8666 2.0410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245704392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:44 Heat of formation + Delta-G solvation = -57.910454 kcal Electronic energy + Delta-G solvation = -18396.848643 eV Core-core repulsion = 15659.116200 eV Total energy + Delta-G solvation = -2737.732444 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.16594 -39.28552 -35.93101 -34.64708 -33.45231 -33.08012 -29.79506 -29.16902 -27.26294 -24.84835 -24.37684 -21.51980 -20.96136 -20.58589 -19.79882 -17.91916 -17.32545 -16.41896 -16.16231 -15.84498 -15.51990 -15.23577 -14.63476 -14.33918 -13.94460 -13.79451 -13.54777 -13.36348 -13.06851 -12.97541 -12.84988 -12.74150 -12.46141 -12.40966 -12.29539 -12.12148 -11.87348 -11.63752 -11.44000 -11.35631 -11.28042 -10.17315 -9.97200 -9.27102 -8.45483 -5.93797 1.35473 1.40041 1.54359 2.07174 2.28657 2.81539 3.21394 3.31816 3.65142 3.83137 4.06599 4.14682 4.18756 4.27780 4.39368 4.45127 4.49507 4.68538 4.73680 4.75901 4.80461 4.86700 4.94120 5.00082 5.05697 5.15266 5.17707 5.32374 5.38250 5.41276 5.47666 5.53776 5.95115 6.11028 6.21135 6.63081 7.15406 7.59117 8.16201 8.72556 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037573 B = 0.006534 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.030619 B = 4283.923407 C = 4592.053157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.073 3.927 3 H 0.052 0.948 4 C 0.458 3.542 5 O -0.607 6.607 6 N -0.578 5.578 7 C -0.326 4.326 8 H 0.077 0.923 9 C -0.014 4.014 10 N -0.924 5.924 11 Si 0.991 3.009 12 H -0.274 1.274 13 H -0.271 1.271 14 H -0.271 1.271 15 N -0.501 5.501 16 C 0.058 3.942 17 H 0.044 0.956 18 C -0.126 4.126 19 C -0.110 4.110 20 C -0.119 4.119 21 C 0.055 3.945 22 H 0.058 0.942 23 C -0.137 4.137 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.391 0.609 28 H 0.276 0.724 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 1.868 14.773 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.040 4.040 3 H 0.070 0.930 4 C 0.245 3.755 5 O -0.491 6.491 6 N -0.216 5.216 7 C -0.456 4.456 8 H 0.095 0.905 9 C -0.214 4.214 10 N -0.565 5.565 11 Si 0.815 3.185 12 H -0.199 1.199 13 H -0.196 1.196 14 H -0.196 1.196 15 N -0.227 5.227 16 C -0.050 4.050 17 H 0.062 0.938 18 C -0.184 4.184 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.052 4.052 22 H 0.076 0.924 23 C -0.195 4.195 24 H 0.078 0.922 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.225 0.775 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.048 0.645 14.554 14.711 hybrid contribution 0.506 0.953 -1.288 1.680 sum -1.541 1.598 13.266 13.451 Atomic orbital electron populations 1.21881 0.91336 1.02825 1.02786 1.21548 0.97865 0.94709 0.89853 0.93039 1.20456 0.82143 0.87863 0.85011 1.90490 1.58482 1.15907 1.84256 1.42005 1.58642 1.09481 1.11431 1.19649 1.41543 0.93298 0.91073 0.90472 1.26001 0.97469 0.96236 1.01645 1.69683 1.49254 1.06261 1.31305 0.84903 0.78165 0.78047 0.77420 1.19870 1.19590 1.19640 1.64556 1.04132 1.53362 1.00653 1.22810 0.88119 0.97009 0.97057 0.93818 1.21659 0.98644 0.99298 0.98761 1.22478 0.98861 1.01700 0.91728 1.22466 0.93753 1.02245 0.97179 1.22530 0.96105 0.97344 0.89270 0.92380 1.21959 0.96215 0.99720 1.01595 0.92189 0.88855 0.92564 0.77541 0.91427 0.95319 0.91741 0.93547 0.89361 0.91226 0.89847 0.89397 0.93325 0.90209 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 7.60 71.98 0.55 -3.62 16 2 C 0.07 2.74 2.23 44.17 0.10 2.84 16 3 H 0.05 1.85 7.85 -2.39 -0.02 1.83 16 4 C 0.46 22.62 4.68 87.66 0.41 23.03 16 5 O -0.61 -34.43 14.39 -3.07 -0.04 -34.47 16 6 N -0.58 -30.73 5.29 -306.98 -1.62 -32.35 16 7 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 10 N -0.92 -51.00 13.05 21.66 0.28 -50.72 16 11 Si 0.99 43.95 29.55 68.60 2.03 45.97 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 N -0.50 -17.03 4.28 -812.96 -3.48 -20.51 16 16 C 0.06 1.90 2.87 45.26 0.13 2.03 16 17 H 0.04 1.44 7.84 -2.39 -0.02 1.42 16 18 C -0.13 -4.90 8.10 71.98 0.58 -4.32 16 19 C -0.11 -2.62 6.50 31.80 0.21 -2.41 16 20 C -0.12 -2.36 6.57 31.47 0.21 -2.15 16 21 C 0.06 1.37 2.46 45.06 0.11 1.48 16 22 H 0.06 1.34 7.09 -2.39 -0.02 1.33 16 23 C -0.14 -3.05 8.86 71.98 0.64 -2.41 16 24 H 0.06 2.05 7.37 -2.38 -0.02 2.03 16 25 H 0.09 2.28 6.02 -2.39 -0.01 2.27 16 26 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.39 20.15 7.88 -92.71 -0.73 19.42 16 28 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.03 1.35 5.46 -2.39 -0.01 1.34 16 30 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.05 1.92 8.11 -2.39 -0.02 1.91 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.73 8.05 -2.39 -0.02 1.71 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.49 7.69 -2.39 -0.02 1.47 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.31 5.19 -2.39 -0.01 1.30 16 Total: -1.00 -67.19 295.79 1.69 -65.50 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.31 Total: 30.55 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 4.21 Total: -3.97 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -4.82 Total: -103.58 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.04 Total: -34.47 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -67.19 1.69 -65.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245704392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.585 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds