Wall clock time and date at job start Sun Mar 29 2020 22:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47000 * 2 1 4 4 C 1.50702 * 109.47256 * 240.00071 * 2 1 3 5 5 O 1.21292 * 119.99736 * 239.60916 * 4 2 1 6 6 N 1.34779 * 120.00143 * 59.61190 * 4 2 1 7 7 C 1.37091 * 119.99775 * 180.02562 * 6 4 2 8 8 H 1.08003 * 120.00406 * 359.97438 * 7 6 4 9 9 C 1.38954 * 119.99955 * 179.97438 * 7 6 4 10 10 N 1.31412 * 119.99718 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00376 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47069 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47107 * 119.99996 * 11 9 7 14 14 H 1.48500 * 109.47527 * 240.00242 * 11 9 7 15 15 N 1.46897 * 109.47130 * 119.99624 * 2 1 3 16 16 C 1.47443 * 111.00061 * 189.69517 * 15 2 1 17 17 H 1.09008 * 110.01818 * 117.26164 * 16 15 2 18 18 C 1.53003 * 109.89122 * 356.15626 * 16 15 2 19 19 C 1.54312 * 107.23752 * 236.74480 * 16 15 2 20 20 C 1.55145 * 103.01921 * 337.71785 * 19 16 15 21 21 C 1.47846 * 110.99708 * 68.85658 * 15 2 1 22 22 H 1.08998 * 110.46779 * 27.48684 * 21 15 2 23 23 C 1.52999 * 110.37556 * 265.19115 * 21 15 2 24 24 H 1.08995 * 109.47260 * 291.52260 * 1 2 3 25 25 H 1.08998 * 109.47139 * 51.52301 * 1 2 3 26 26 H 1.08999 * 109.47126 * 171.51446 * 1 2 3 27 27 H 0.96998 * 119.99702 * 359.97438 * 6 4 2 28 28 H 0.97008 * 120.00142 * 180.02562 * 10 9 7 29 29 H 1.08996 * 109.46420 * 290.07526 * 18 16 15 30 30 H 1.09000 * 109.46717 * 50.07003 * 18 16 15 31 31 H 1.08995 * 109.47042 * 170.07240 * 18 16 15 32 32 H 1.09001 * 110.70895 * 96.10055 * 19 16 15 33 33 H 1.09003 * 110.71064 * 219.33840 * 19 16 15 34 34 H 1.08997 * 110.99170 * 153.74208 * 20 19 16 35 35 H 1.09001 * 110.99229 * 277.56065 * 20 19 16 36 36 H 1.09002 * 109.46993 * 311.37469 * 23 21 15 37 37 H 1.09002 * 109.46700 * 71.37020 * 23 21 15 38 38 H 1.08999 * 109.47055 * 191.36804 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7355 -1.6924 -1.1191 6 7 1.7003 -0.2545 -2.4546 7 6 2.1570 -0.9011 -3.5739 8 1 2.7831 -1.7756 -3.4748 9 6 1.8142 -0.4315 -4.8359 10 7 1.0529 0.6328 -4.9565 11 14 2.4369 -1.3120 -6.3611 12 1 3.2697 -2.4733 -5.9569 13 1 1.2819 -1.7874 -7.1644 14 1 3.2537 -0.3758 -7.1745 15 7 2.0196 -0.6924 1.1995 16 6 3.4750 -0.5146 1.3551 17 1 3.6885 0.0235 2.2787 18 6 4.0355 0.2598 0.1605 19 6 4.1044 -1.9224 1.4102 20 6 2.9180 -2.8185 1.8535 21 6 1.7268 -2.1400 1.1321 22 1 1.6735 -2.4702 0.0948 23 6 0.4166 -2.4528 1.8577 24 1 -0.3633 0.3770 0.9560 25 1 -0.3633 0.6394 -0.8045 26 1 -0.3633 -1.0164 -0.1516 27 1 1.1377 0.5306 -2.5436 28 1 0.8133 0.9605 -5.8376 29 1 3.9966 -0.3678 -0.7298 30 1 3.4400 1.1581 -0.0019 31 1 5.0692 0.5406 0.3622 32 1 4.4667 -2.2215 0.4266 33 1 4.9087 -1.9566 2.1451 34 1 3.0519 -3.8433 1.5070 35 1 2.7883 -2.7876 2.9353 36 1 0.4226 -1.9785 2.8391 37 1 -0.4215 -2.0710 1.2747 38 1 0.3154 -3.5316 1.9760 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245704395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:45 Heat of formation + Delta-G solvation = -32.488478 kcal Electronic energy + Delta-G solvation = -18896.092636 eV Core-core repulsion = 16159.462572 eV Total energy + Delta-G solvation = -2736.630064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.90980 -38.75685 -35.88521 -34.53171 -33.65339 -33.04137 -29.73813 -28.86331 -27.14562 -25.23288 -23.87884 -21.75848 -21.44765 -20.27798 -19.41942 -17.72032 -17.26650 -16.83333 -16.53942 -15.82774 -15.33422 -15.26934 -14.67098 -14.12080 -13.86125 -13.72155 -13.50968 -13.25863 -13.20812 -13.03913 -12.77622 -12.47136 -12.43412 -12.31477 -12.14117 -11.98107 -11.86813 -11.54538 -11.46647 -11.13041 -11.00367 -10.48139 -9.93133 -8.95433 -8.45333 -5.94307 1.33363 1.39164 1.52309 2.04059 2.27783 3.05732 3.20219 3.26106 3.81478 3.88674 4.11322 4.21383 4.34450 4.38932 4.46659 4.55351 4.65676 4.73153 4.81184 4.86393 4.87645 4.94473 5.00538 5.08151 5.13831 5.21276 5.26875 5.36132 5.40858 5.45466 5.64788 5.65593 5.96961 6.19005 6.23090 6.60622 7.13270 7.57782 8.12158 8.70271 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.007540 C = 0.007192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.955378 B = 3712.615980 C = 3892.098441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.062 3.938 3 H 0.106 0.894 4 C 0.427 3.573 5 O -0.604 6.604 6 N -0.569 5.569 7 C -0.327 4.327 8 H 0.079 0.921 9 C -0.013 4.013 10 N -0.920 5.920 11 Si 0.988 3.012 12 H -0.274 1.274 13 H -0.272 1.272 14 H -0.272 1.272 15 N -0.487 5.487 16 C 0.077 3.923 17 H 0.095 0.905 18 C -0.193 4.193 19 C -0.125 4.125 20 C -0.110 4.110 21 C 0.041 3.959 22 H 0.064 0.936 23 C -0.132 4.132 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.393 0.607 28 H 0.276 0.724 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 -0.772 11.513 11.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.051 4.051 3 H 0.124 0.876 4 C 0.214 3.786 5 O -0.492 6.492 6 N -0.205 5.205 7 C -0.457 4.457 8 H 0.097 0.903 9 C -0.213 4.213 10 N -0.561 5.561 11 Si 0.813 3.187 12 H -0.199 1.199 13 H -0.198 1.198 14 H -0.198 1.198 15 N -0.211 5.211 16 C -0.031 4.031 17 H 0.113 0.887 18 C -0.251 4.251 19 C -0.163 4.163 20 C -0.148 4.148 21 C -0.066 4.066 22 H 0.081 0.919 23 C -0.190 4.190 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.227 0.773 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.218 -1.086 11.847 11.899 hybrid contribution 0.491 -0.212 -1.992 2.063 sum 0.709 -1.298 9.855 9.966 Atomic orbital electron populations 1.21824 0.91964 1.01881 1.03307 1.21927 0.97442 0.98904 0.86792 0.87633 1.21578 0.84025 0.87276 0.85685 1.90417 1.42430 1.29940 1.86431 1.42111 1.45686 1.27888 1.04817 1.19657 1.29854 1.11283 0.84859 0.90350 1.25988 0.96775 0.97064 1.01460 1.69681 1.36747 1.23771 1.25860 0.84935 0.78147 0.78058 0.77590 1.19907 1.19758 1.19778 1.64180 1.13313 1.10966 1.32598 1.22292 0.86971 0.96120 0.97737 0.88719 1.22895 1.00982 1.00721 1.00486 1.22713 0.98129 0.94832 1.00670 1.22549 0.94016 0.98089 1.00120 1.22997 0.95911 0.87347 1.00389 0.91854 1.21842 0.95692 1.00812 1.00623 0.89189 0.92009 0.93330 0.77338 0.91404 0.91965 0.92444 0.92149 0.93525 0.90108 0.92101 0.89765 0.91446 0.93021 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 8.12 71.98 0.58 -3.54 16 2 C 0.06 2.22 2.33 44.17 0.10 2.32 16 3 H 0.11 3.60 5.87 -2.39 -0.01 3.58 16 4 C 0.43 19.46 4.40 87.66 0.39 19.84 16 5 O -0.60 -30.47 9.20 -3.07 -0.03 -30.49 16 6 N -0.57 -28.69 5.19 -306.98 -1.59 -30.28 16 7 C -0.33 -18.24 9.68 84.04 0.81 -17.42 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 10 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 11 Si 0.99 43.02 29.55 68.60 2.03 45.04 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 N -0.49 -16.11 4.81 -815.28 -3.92 -20.03 16 16 C 0.08 2.46 3.72 45.26 0.17 2.63 16 17 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 18 C -0.19 -6.88 7.68 71.98 0.55 -6.32 16 19 C -0.13 -3.98 5.94 31.77 0.19 -3.79 16 20 C -0.11 -3.28 6.50 31.98 0.21 -3.08 16 21 C 0.04 1.40 2.01 45.39 0.09 1.49 16 22 H 0.06 2.75 4.79 -3.94 -0.02 2.73 16 23 C -0.13 -3.62 9.15 71.98 0.66 -2.97 16 24 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.06 1.91 7.79 -2.39 -0.02 1.89 16 26 H 0.05 1.62 6.00 -2.39 -0.01 1.60 16 27 H 0.39 19.30 7.47 -92.71 -0.69 18.61 16 28 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 29 H 0.06 2.77 4.27 -2.39 -0.01 2.76 16 30 H 0.06 1.97 5.70 -2.39 -0.01 1.96 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.81 6.72 -2.39 -0.02 1.79 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 2.11 8.06 -2.39 -0.02 2.09 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.43 5.67 -2.39 -0.01 1.42 16 38 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -60.13 282.95 1.35 -58.78 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: 0.36 Total: 37.35 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 4.22 Total: -11.07 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -5.23 Total: -99.61 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.03 Total: -30.49 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -60.13 1.35 -58.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245704395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.293 kcal (2) G-P(sol) polarization free energy of solvation -60.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds