Wall clock time and date at job start Sun Mar 29 2020 22:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.50079 * 2 1 4 4 C 1.53120 * 109.50349 * 239.92252 * 2 1 3 5 5 C 1.53123 * 109.15548 * 182.36694 * 4 2 1 6 6 C 1.53037 * 109.28090 * 57.65486 * 5 4 2 7 7 N 1.46845 * 109.52176 * 300.81561 * 6 5 4 8 8 C 1.46895 * 111.00164 * 185.84202 * 7 6 5 9 9 C 1.50698 * 109.47176 * 71.85074 * 8 7 6 10 10 O 1.21293 * 120.00133 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00174 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00339 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.99990 * 0.02562 * 12 11 9 14 14 C 1.38951 * 120.00307 * 180.02562 * 12 11 9 15 15 N 1.31411 * 120.00232 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99737 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47524 * 89.99938 * 16 14 12 18 18 H 1.48500 * 109.47208 * 209.99790 * 16 14 12 19 19 H 1.48495 * 109.47503 * 329.99928 * 16 14 12 20 20 C 1.46850 * 111.19662 * 61.74341 * 7 6 5 21 21 H 1.08995 * 109.46363 * 58.27630 * 20 7 6 22 22 C 1.53000 * 109.45363 * 178.24771 * 20 7 6 23 23 H 1.09003 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47644 * 300.08416 * 1 2 3 25 25 H 1.08998 * 109.46977 * 60.08005 * 1 2 3 26 26 H 1.08997 * 109.51953 * 302.26496 * 4 2 1 27 27 H 1.08994 * 109.52815 * 62.45866 * 4 2 1 28 28 H 1.09008 * 109.49858 * 177.59134 * 5 4 2 29 29 H 1.08996 * 109.50149 * 297.70740 * 5 4 2 30 30 H 1.08997 * 109.45935 * 180.80105 * 6 5 4 31 31 H 1.08997 * 109.46724 * 60.83335 * 6 5 4 32 32 H 1.09004 * 109.47118 * 191.85238 * 8 7 6 33 33 H 1.09001 * 109.47082 * 311.84787 * 8 7 6 34 34 H 0.97009 * 119.99876 * 0.02562 * 11 9 8 35 35 H 0.96994 * 120.00149 * 180.02562 * 15 14 12 36 36 H 1.08996 * 109.47129 * 173.20517 * 22 20 7 37 37 H 1.09004 * 109.47094 * 293.20581 * 22 20 7 38 38 H 1.09001 * 109.47196 * 53.20589 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2490 5 6 3.5712 -0.7706 -1.2114 6 6 4.0238 -1.4716 0.0716 7 7 3.5101 -0.7411 1.2372 8 6 4.0387 -1.3046 2.4866 9 6 5.4987 -0.9549 2.6171 10 8 6.0450 -0.3001 1.7546 11 7 6.1972 -1.3687 3.6929 12 6 7.5253 -1.0501 3.8120 13 1 8.0117 -0.4672 3.0440 14 6 8.2456 -1.4772 4.9208 15 7 9.5185 -1.1714 5.0352 16 14 7.4044 -2.4862 6.2489 17 1 7.5249 -3.9303 5.9245 18 1 8.0507 -2.2175 7.5586 19 1 5.9688 -2.1129 6.3195 20 6 2.0417 -0.7232 1.2478 21 1 1.6661 -1.7464 1.2542 22 6 1.5500 0.0081 2.4985 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5151 0.8892 25 1 -0.3633 0.5126 -0.8907 26 1 1.6458 -1.7389 -1.2691 27 1 1.7151 -0.1868 -2.1399 28 1 3.9396 -1.3219 -2.0766 29 1 3.9672 0.2447 -1.2305 30 1 5.1129 -1.4942 0.1082 31 1 3.6389 -2.4913 0.0835 32 1 3.4891 -0.8918 3.3326 33 1 3.9245 -2.3885 2.4732 34 1 5.7602 -1.8920 4.3830 35 1 10.0213 -1.4699 5.8091 36 1 0.4678 0.1277 2.4476 37 1 1.8102 -0.5716 3.3842 38 1 2.0217 0.9891 2.5548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246688487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:36 Heat of formation + Delta-G solvation = -39.058245 kcal Electronic energy + Delta-G solvation = -17924.358289 eV Core-core repulsion = 15187.443338 eV Total energy + Delta-G solvation = -2736.914951 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.62738 -37.89084 -34.29552 -33.60248 -32.95519 -31.59236 -28.64483 -27.13341 -25.84877 -24.32877 -21.76999 -21.14853 -19.49631 -19.24652 -18.17014 -16.18997 -15.31115 -15.18428 -14.80427 -14.57220 -14.43923 -13.86410 -13.68293 -13.17260 -12.73291 -12.64890 -12.44173 -12.26975 -11.99558 -11.95055 -11.61021 -11.48815 -11.31677 -11.04821 -10.75156 -10.56828 -10.50392 -10.13885 -9.99076 -9.92524 -9.48505 -8.49450 -8.12429 -7.83451 -6.26590 -3.77472 3.05576 3.09416 3.17460 3.81796 3.95405 4.14146 4.72798 4.75476 4.89623 4.96827 5.20282 5.26627 5.38682 5.41243 5.47985 5.53081 5.60445 5.62871 5.71937 5.83745 5.85562 5.91479 5.93340 6.02104 6.05564 6.12395 6.16634 6.31521 6.33809 6.47682 6.58729 7.32367 7.47678 7.64922 8.20231 8.66417 9.00951 9.48247 9.91037 10.86862 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041512 B = 0.005664 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.343090 B = 4942.465369 C = 5357.997451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.080 0.920 4 C -0.115 4.115 5 C -0.114 4.114 6 C 0.058 3.942 7 N -0.510 5.510 8 C 0.037 3.963 9 C 0.455 3.545 10 O -0.557 6.557 11 N -0.595 5.595 12 C -0.302 4.302 13 H 0.119 0.881 14 C 0.040 3.960 15 N -0.884 5.884 16 Si 0.879 3.121 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.270 1.270 20 C 0.087 3.913 21 H 0.034 0.966 22 C -0.154 4.154 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.021 0.979 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.369 0.631 35 H 0.272 0.728 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.213 -1.913 -6.393 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.070 4.070 7 N -0.234 5.234 8 C -0.094 4.094 9 C 0.241 3.759 10 O -0.438 6.438 11 N -0.235 5.235 12 C -0.431 4.431 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.525 5.525 16 Si 0.705 3.295 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.022 4.022 21 H 0.052 0.948 22 C -0.211 4.211 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.039 0.961 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.202 0.798 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.465 -0.993 -6.898 18.804 hybrid contribution -0.735 -1.720 1.340 2.301 sum -18.200 -2.713 -5.558 19.222 Atomic orbital electron populations 1.21889 0.95353 1.01529 1.01692 1.21162 0.94609 1.00574 0.93912 0.90197 1.21654 0.96232 0.99973 0.97389 1.21548 0.94934 1.02062 0.96663 1.22145 1.01989 0.93299 0.89571 1.61478 1.05909 1.54696 1.01351 1.21990 0.95948 0.97673 0.93834 1.19711 0.87517 0.84792 0.83911 1.90542 1.70685 1.41410 1.41171 1.42228 1.10966 1.50025 1.20311 1.19423 0.83086 1.32621 1.07953 0.86327 1.25018 0.95527 0.98003 0.97647 1.69620 1.07113 1.45610 1.30111 0.86685 0.79449 0.80988 0.82347 1.19725 1.20229 1.19523 1.21618 0.87742 0.97403 0.95407 0.94787 1.22041 1.00708 1.01658 0.96709 0.93027 0.92273 0.92731 0.92651 0.92138 0.91932 0.90823 0.88851 0.96121 0.88794 0.93579 0.79831 0.91704 0.91981 0.92600 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.87 37.16 0.33 -1.00 16 2 C -0.08 -0.97 2.40 -90.54 -0.22 -1.18 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 4 C -0.11 -1.30 5.29 -26.61 -0.14 -1.44 16 5 C -0.11 -1.55 6.09 -26.65 -0.16 -1.71 16 6 C 0.06 0.93 5.11 -3.84 -0.02 0.92 16 7 N -0.51 -8.49 4.12 -228.13 -0.94 -9.43 16 8 C 0.04 0.65 5.26 -4.98 -0.03 0.62 16 9 C 0.46 10.59 7.47 -10.99 -0.08 10.51 16 10 O -0.56 -15.14 14.42 5.55 0.08 -15.06 16 11 N -0.60 -14.47 5.09 -10.97 -0.06 -14.53 16 12 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 13 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 15 N -0.88 -26.14 13.96 55.50 0.77 -25.37 16 16 Si 0.88 19.65 27.74 -169.99 -4.71 14.93 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 20 C 0.09 1.13 1.96 -67.72 -0.13 1.00 16 21 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 22 C -0.15 -1.82 8.43 37.16 0.31 -1.50 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.50 6.32 -51.93 -0.33 0.17 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.83 6.35 -51.93 -0.33 1.50 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 1.47 5.53 -51.93 -0.29 1.19 16 33 H 0.05 0.73 8.05 -51.93 -0.42 0.32 16 34 H 0.37 7.91 5.76 -40.82 -0.24 7.68 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.06 0.60 6.12 -51.93 -0.32 0.28 16 37 H 0.06 0.64 6.40 -51.93 -0.33 0.31 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 294.26 15.07 4.43 4.43 Total: -1.00 -31.82 294.26 -6.84 -38.66 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.03 Total: 7.93 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -0.39 Total: -1.58 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.22 Total: -49.32 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.08 Total: -15.06 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.82 -6.84 -38.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246688487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.395 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds