Wall clock time and date at job start Sun Mar 29 2020 22:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.50079 * 2 1 4 4 C 1.53120 * 109.50349 * 239.92252 * 2 1 3 5 5 C 1.53123 * 109.15548 * 182.36694 * 4 2 1 6 6 C 1.53037 * 109.28090 * 57.65486 * 5 4 2 7 7 N 1.46845 * 109.52176 * 300.81561 * 6 5 4 8 8 C 1.46895 * 111.00164 * 185.84202 * 7 6 5 9 9 C 1.50698 * 109.47176 * 71.85074 * 8 7 6 10 10 O 1.21293 * 120.00133 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00174 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00339 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.99990 * 0.02562 * 12 11 9 14 14 C 1.38951 * 120.00307 * 180.02562 * 12 11 9 15 15 N 1.31411 * 120.00232 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99737 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47524 * 89.99938 * 16 14 12 18 18 H 1.48500 * 109.47208 * 209.99790 * 16 14 12 19 19 H 1.48495 * 109.47503 * 329.99928 * 16 14 12 20 20 C 1.46850 * 111.19662 * 61.74341 * 7 6 5 21 21 H 1.08995 * 109.46363 * 58.27630 * 20 7 6 22 22 C 1.53000 * 109.45363 * 178.24771 * 20 7 6 23 23 H 1.09003 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47644 * 300.08416 * 1 2 3 25 25 H 1.08998 * 109.46977 * 60.08005 * 1 2 3 26 26 H 1.08997 * 109.51953 * 302.26496 * 4 2 1 27 27 H 1.08994 * 109.52815 * 62.45866 * 4 2 1 28 28 H 1.09008 * 109.49858 * 177.59134 * 5 4 2 29 29 H 1.08996 * 109.50149 * 297.70740 * 5 4 2 30 30 H 1.08997 * 109.45935 * 180.80105 * 6 5 4 31 31 H 1.08997 * 109.46724 * 60.83335 * 6 5 4 32 32 H 1.09004 * 109.47118 * 191.85238 * 8 7 6 33 33 H 1.09001 * 109.47082 * 311.84787 * 8 7 6 34 34 H 0.97009 * 119.99876 * 0.02562 * 11 9 8 35 35 H 0.96994 * 120.00149 * 180.02562 * 15 14 12 36 36 H 1.08996 * 109.47129 * 173.20517 * 22 20 7 37 37 H 1.09004 * 109.47094 * 293.20581 * 22 20 7 38 38 H 1.09001 * 109.47196 * 53.20589 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2490 5 6 3.5712 -0.7706 -1.2114 6 6 4.0238 -1.4716 0.0716 7 7 3.5101 -0.7411 1.2372 8 6 4.0387 -1.3046 2.4866 9 6 5.4987 -0.9549 2.6171 10 8 6.0450 -0.3001 1.7546 11 7 6.1972 -1.3687 3.6929 12 6 7.5253 -1.0501 3.8120 13 1 8.0117 -0.4672 3.0440 14 6 8.2456 -1.4772 4.9208 15 7 9.5185 -1.1714 5.0352 16 14 7.4044 -2.4862 6.2489 17 1 7.5249 -3.9303 5.9245 18 1 8.0507 -2.2175 7.5586 19 1 5.9688 -2.1129 6.3195 20 6 2.0417 -0.7232 1.2478 21 1 1.6661 -1.7464 1.2542 22 6 1.5500 0.0081 2.4985 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5151 0.8892 25 1 -0.3633 0.5126 -0.8907 26 1 1.6458 -1.7389 -1.2691 27 1 1.7151 -0.1868 -2.1399 28 1 3.9396 -1.3219 -2.0766 29 1 3.9672 0.2447 -1.2305 30 1 5.1129 -1.4942 0.1082 31 1 3.6389 -2.4913 0.0835 32 1 3.4891 -0.8918 3.3326 33 1 3.9245 -2.3885 2.4732 34 1 5.7602 -1.8920 4.3830 35 1 10.0213 -1.4699 5.8091 36 1 0.4678 0.1277 2.4476 37 1 1.8102 -0.5716 3.3842 38 1 2.0217 0.9891 2.5548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246688487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:36 Heat of formation + Delta-G solvation = -62.365354 kcal Electronic energy + Delta-G solvation = -17925.368961 eV Core-core repulsion = 15187.443338 eV Total energy + Delta-G solvation = -2737.925623 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.94721 -39.57004 -36.07147 -35.04829 -34.02264 -33.69182 -29.82060 -28.45397 -26.87548 -26.13967 -22.99894 -22.20419 -21.20294 -20.50662 -20.12103 -17.83245 -16.87826 -16.59661 -16.36096 -15.72175 -15.52387 -15.39753 -15.04518 -14.84119 -14.35701 -13.92619 -13.75547 -13.62945 -13.20432 -13.01943 -12.90817 -12.56820 -12.47185 -12.40548 -12.29910 -11.97793 -11.79496 -11.54577 -11.43080 -11.15959 -10.96648 -10.34970 -10.22655 -9.13139 -8.40764 -6.01275 1.29691 1.35054 1.44029 1.97774 2.23114 2.61553 3.15253 3.23784 3.80591 3.88941 3.95908 4.08158 4.27186 4.37211 4.38448 4.43236 4.46025 4.55302 4.69694 4.74556 4.85032 4.93607 4.97631 5.04402 5.08247 5.15533 5.23529 5.31105 5.37783 5.49770 5.54873 5.59896 5.93118 6.11883 6.33649 6.61639 6.89752 7.41274 7.99534 8.77213 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041512 B = 0.005664 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.343090 B = 4942.465369 C = 5357.997451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 H 0.060 0.940 4 C -0.108 4.108 5 C -0.112 4.112 6 C 0.058 3.942 7 N -0.534 5.534 8 C 0.049 3.951 9 C 0.452 3.548 10 O -0.605 6.605 11 N -0.594 5.594 12 C -0.327 4.327 13 H 0.054 0.946 14 C -0.015 4.015 15 N -0.936 5.936 16 Si 0.964 3.036 17 H -0.257 1.257 18 H -0.274 1.274 19 H -0.232 1.232 20 C 0.085 3.915 21 H 0.049 0.951 22 C -0.153 4.153 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.388 0.612 35 H 0.279 0.721 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.170 -3.688 -5.272 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 H 0.078 0.922 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.069 4.069 7 N -0.260 5.260 8 C -0.082 4.082 9 C 0.240 3.760 10 O -0.489 6.489 11 N -0.237 5.237 12 C -0.456 4.456 13 H 0.072 0.928 14 C -0.213 4.213 15 N -0.577 5.577 16 Si 0.784 3.216 17 H -0.182 1.182 18 H -0.199 1.199 19 H -0.155 1.155 20 C -0.022 4.022 21 H 0.067 0.933 22 C -0.210 4.210 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.139 0.861 33 H 0.091 0.909 34 H 0.224 0.776 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.457 -2.766 -5.790 22.396 hybrid contribution 0.574 -1.079 0.864 1.497 sum -20.883 -3.845 -4.927 21.798 Atomic orbital electron populations 1.21831 0.92849 1.02469 1.02592 1.21177 0.96561 0.99221 0.93339 0.92170 1.21628 0.93842 1.01038 0.98080 1.21525 0.97144 1.00438 0.95871 1.22055 0.99338 0.94665 0.90891 1.61431 1.08521 1.55177 1.00826 1.21902 0.91320 0.99431 0.95558 1.20943 0.89858 0.82826 0.82376 1.90525 1.72445 1.43198 1.42718 1.42050 1.09430 1.50730 1.21471 1.18990 0.85436 1.33643 1.07523 0.92825 1.26098 0.96065 0.98879 1.00293 1.69804 1.09407 1.47028 1.31462 0.85373 0.79966 0.78913 0.77329 1.18156 1.19905 1.15522 1.21779 0.85051 0.98569 0.96828 0.93349 1.22053 1.02255 1.00446 0.96217 0.91972 0.91575 0.91768 0.91245 0.90550 0.90679 0.93277 0.93444 0.94430 0.86142 0.90884 0.77624 0.91169 0.89325 0.92029 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.87 71.98 0.64 -1.35 16 2 C -0.08 -1.73 2.40 -10.74 -0.03 -1.76 16 3 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 4 C -0.11 -2.18 5.29 30.68 0.16 -2.02 16 5 C -0.11 -3.00 6.09 30.65 0.19 -2.81 16 6 C 0.06 1.89 5.11 86.33 0.44 2.33 16 7 N -0.53 -17.25 4.12 -875.68 -3.61 -20.86 16 8 C 0.05 1.63 5.26 85.56 0.45 2.08 16 9 C 0.45 21.42 7.47 87.66 0.65 22.07 16 10 O -0.61 -34.87 14.42 -3.07 -0.04 -34.91 16 11 N -0.59 -29.04 5.09 -306.99 -1.56 -30.61 16 12 C -0.33 -19.62 10.16 84.04 0.85 -18.76 16 13 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 14 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 15 N -0.94 -57.37 13.96 21.66 0.30 -57.07 16 16 Si 0.96 39.48 27.74 68.60 1.90 41.38 16 17 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.23 -8.02 6.52 99.48 0.65 -7.38 16 20 C 0.09 1.98 1.96 44.94 0.09 2.07 16 21 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 22 C -0.15 -3.11 8.43 71.98 0.61 -2.51 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 0.86 6.32 -2.39 -0.02 0.84 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.95 6.35 -2.39 -0.02 1.94 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 3.39 5.53 -2.38 -0.01 3.38 16 33 H 0.07 2.08 8.05 -2.39 -0.02 2.06 16 34 H 0.39 15.74 5.76 -92.70 -0.53 15.20 16 35 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.09 1.34 6.12 -2.39 -0.01 1.32 16 37 H 0.06 1.18 6.40 -2.38 -0.02 1.16 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.52 294.26 1.96 -73.56 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.45 Total: 29.54 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 4.52 Total: -1.04 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -4.87 Total: -108.53 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.04 Total: -34.91 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.38 kcal Total: -75.52 1.96 -73.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246688487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.194 kcal (2) G-P(sol) polarization free energy of solvation -75.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds