Wall clock time and date at job start Sun Mar 29 2020 22:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46886 * 2 1 4 4 C 1.50702 * 109.47170 * 119.99573 * 2 1 3 5 5 H 1.08004 * 119.99265 * 120.00051 * 4 2 1 6 6 C 1.37873 * 120.00351 * 300.00398 * 4 2 1 7 7 N 1.31510 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00032 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47031 * 59.99710 * 8 6 4 10 10 H 1.48500 * 109.46914 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46902 * 299.99669 * 8 6 4 12 12 N 1.46502 * 109.47346 * 239.99925 * 2 1 3 13 13 C 1.34780 * 119.99722 * 84.99774 * 12 2 1 14 14 O 1.21278 * 120.00158 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99616 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.57596 * 60.15771 * 15 13 12 17 17 C 1.53123 * 109.52399 * 300.00039 * 15 13 12 18 18 C 1.53039 * 109.31189 * 182.46470 * 17 15 13 19 19 N 1.46842 * 109.52266 * 59.15550 * 18 17 15 20 20 C 1.46849 * 111.20050 * 298.25785 * 19 18 17 21 21 H 1.08995 * 109.46417 * 301.72694 * 20 19 18 22 22 C 1.53005 * 109.46192 * 181.74928 * 20 19 18 23 23 C 1.53036 * 109.52274 * 61.74759 * 20 19 18 24 24 H 1.09002 * 109.46886 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47164 * 299.99870 * 1 2 3 26 26 H 1.09000 * 109.46789 * 60.00034 * 1 2 3 27 27 H 0.96999 * 120.00134 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99903 * 265.00251 * 12 2 1 29 29 H 1.09002 * 109.50371 * 62.50019 * 17 15 13 30 30 H 1.09003 * 109.50070 * 302.42179 * 17 15 13 31 31 H 1.08995 * 109.46501 * 179.17754 * 18 17 15 32 32 H 1.09009 * 109.45500 * 299.14277 * 18 17 15 33 33 H 1.00898 * 111.00242 * 62.36287 * 19 18 17 34 34 H 1.09003 * 109.46829 * 59.99889 * 22 20 19 35 35 H 1.08992 * 109.46889 * 180.02562 * 22 20 19 36 36 H 1.09002 * 109.47175 * 300.00706 * 22 20 19 37 37 H 1.09000 * 109.50390 * 60.75234 * 23 20 19 38 38 H 1.08997 * 109.50325 * 180.87997 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.8064 -1.1208 4.0082 10 1 1.8269 -0.4198 5.2205 11 1 1.8258 -2.5201 4.0078 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6489 -0.7288 -3.5877 16 1 1.9756 -1.5493 -3.8357 17 6 4.0525 -1.2807 -3.3233 18 6 4.5820 -1.9475 -4.5949 19 7 4.6205 -0.9643 -5.6850 20 6 3.2768 -0.4561 -5.9893 21 1 2.6267 -1.2878 -6.2606 22 6 3.3570 0.5300 -7.1565 23 6 2.7083 0.2553 -4.7594 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7095 1.1618 3.4843 28 1 2.2491 -1.6318 -1.1526 29 1 4.0093 -2.0146 -2.5184 30 1 4.7163 -0.4649 -3.0367 31 1 5.5870 -2.3285 -4.4138 32 1 3.9257 -2.7723 -4.8727 33 1 5.2525 -0.2084 -5.4680 34 1 3.7611 0.0233 -8.0330 35 1 2.3598 0.9076 -7.3822 36 1 4.0075 1.3616 -6.8856 37 1 3.3506 1.0956 -4.4957 38 1 1.7049 0.6188 -4.9806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300056420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:26 Heat of formation + Delta-G solvation = -62.276532 kcal Electronic energy + Delta-G solvation = -17739.017656 eV Core-core repulsion = 15001.095885 eV Total energy + Delta-G solvation = -2737.921771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.81913 -37.87674 -34.79597 -32.98600 -32.15704 -31.63903 -28.76196 -27.05379 -25.27640 -24.10430 -22.08989 -21.07823 -20.28226 -19.24716 -17.13437 -15.76091 -15.70100 -15.24166 -15.19132 -14.45139 -14.30566 -13.81212 -13.66235 -13.27643 -12.64202 -12.47025 -12.23719 -12.03090 -11.79887 -11.66373 -11.49410 -11.12473 -10.98041 -10.93533 -10.75440 -10.61992 -10.42094 -10.32814 -10.23892 -9.07175 -9.04227 -8.55620 -8.37996 -7.89385 -6.13063 -4.22678 3.24340 3.29642 3.30633 3.39981 4.02676 4.21700 4.37297 4.76228 4.83938 5.01436 5.05731 5.19081 5.24781 5.33311 5.44508 5.55936 5.70809 5.76462 5.77769 5.85054 6.00244 6.04725 6.10988 6.23139 6.38674 6.81697 6.95819 6.97557 7.14672 7.30408 7.46743 7.55897 7.68830 7.90896 8.14446 8.67738 8.77638 9.14592 9.45212 10.92886 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042255 B = 0.005266 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.491636 B = 5315.881116 C = 5772.960372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.504 3.496 14 O -0.557 6.557 15 C -0.108 4.108 16 H 0.089 0.911 17 C -0.148 4.148 18 C 0.060 3.940 19 N -0.683 5.683 20 C 0.081 3.919 21 H 0.079 0.921 22 C -0.143 4.143 23 C -0.129 4.129 24 H 0.026 0.974 25 H 0.090 0.910 26 H 0.014 0.986 27 H 0.265 0.735 28 H 0.387 0.613 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.340 0.660 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 -5.292 -13.981 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.356 5.356 13 C 0.288 3.712 14 O -0.436 6.436 15 C -0.130 4.130 16 H 0.107 0.893 17 C -0.188 4.188 18 C -0.070 4.070 19 N -0.313 5.313 20 C -0.029 4.029 21 H 0.097 0.903 22 C -0.201 4.201 23 C -0.168 4.168 24 H 0.045 0.955 25 H 0.108 0.892 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.220 0.780 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.812 -4.797 -14.342 15.870 hybrid contribution 0.136 -0.339 1.855 1.891 sum 4.948 -5.136 -12.487 14.380 Atomic orbital electron populations 1.22071 0.98546 0.99045 1.00841 1.18722 0.90985 0.93941 0.80154 0.93534 1.21178 1.32500 1.13205 0.90377 0.92198 1.24890 0.94799 0.94949 0.99052 1.69893 1.35824 1.22416 1.23983 0.86506 0.79155 0.79597 0.81824 1.20187 1.21100 1.20149 1.46530 1.64966 1.13460 1.10607 1.20410 0.78482 0.87471 0.84798 1.90640 1.51512 1.16225 1.85208 1.21368 0.97761 0.99147 0.94712 0.89279 1.22251 0.95603 1.01239 0.99692 1.22010 1.01442 0.95139 0.88418 1.60771 1.09500 1.18847 1.42133 1.21611 0.90122 0.96983 0.94154 0.90282 1.21779 1.01897 0.98649 0.97768 1.22077 1.02970 0.97936 0.93838 0.95521 0.89178 0.96738 0.92516 0.78045 0.90681 0.91416 0.90505 0.90859 0.84272 0.92033 0.92095 0.92714 0.91208 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.82 2.56 -69.08 -0.18 6.64 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.09 11.32 55.43 0.63 -24.47 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -14.89 4.97 -54.93 -0.27 -15.16 16 13 C 0.50 10.12 7.12 -10.99 -0.08 10.05 16 14 O -0.56 -13.54 15.64 5.56 0.09 -13.45 16 15 C -0.11 -1.57 2.60 -91.64 -0.24 -1.80 16 16 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 17 C -0.15 -1.83 5.24 -26.65 -0.14 -1.97 16 18 C 0.06 0.60 6.55 -3.84 -0.03 0.58 16 19 N -0.68 -7.15 6.50 -106.76 -0.69 -7.84 16 20 C 0.08 0.88 3.03 -67.72 -0.21 0.67 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.14 -1.35 9.47 37.16 0.35 -1.00 16 23 C -0.13 -1.74 3.94 -26.65 -0.11 -1.85 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.39 7.07 8.01 -40.82 -0.33 6.74 16 29 H 0.07 0.90 7.65 -51.93 -0.40 0.50 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.34 3.43 8.79 -39.29 -0.35 3.09 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 304.85 15.07 4.59 4.59 Total: -1.00 -30.31 304.85 -7.73 -38.04 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.39 Total: 7.54 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.67 Total: -4.91 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.34 Total: -47.47 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.31 -7.73 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300056420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.234 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds