Wall clock time and date at job start Sun Mar 29 2020 22:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46886 * 2 1 4 4 C 1.50702 * 109.47170 * 119.99573 * 2 1 3 5 5 H 1.08004 * 119.99265 * 120.00051 * 4 2 1 6 6 C 1.37873 * 120.00351 * 300.00398 * 4 2 1 7 7 N 1.31510 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00032 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47031 * 59.99710 * 8 6 4 10 10 H 1.48500 * 109.46914 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46902 * 299.99669 * 8 6 4 12 12 N 1.46502 * 109.47346 * 239.99925 * 2 1 3 13 13 C 1.34780 * 119.99722 * 84.99774 * 12 2 1 14 14 O 1.21278 * 120.00158 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99616 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.57596 * 60.15771 * 15 13 12 17 17 C 1.53123 * 109.52399 * 300.00039 * 15 13 12 18 18 C 1.53039 * 109.31189 * 182.46470 * 17 15 13 19 19 N 1.46842 * 109.52266 * 59.15550 * 18 17 15 20 20 C 1.46849 * 111.20050 * 298.25785 * 19 18 17 21 21 H 1.08995 * 109.46417 * 301.72694 * 20 19 18 22 22 C 1.53005 * 109.46192 * 181.74928 * 20 19 18 23 23 C 1.53036 * 109.52274 * 61.74759 * 20 19 18 24 24 H 1.09002 * 109.46886 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47164 * 299.99870 * 1 2 3 26 26 H 1.09000 * 109.46789 * 60.00034 * 1 2 3 27 27 H 0.96999 * 120.00134 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99903 * 265.00251 * 12 2 1 29 29 H 1.09002 * 109.50371 * 62.50019 * 17 15 13 30 30 H 1.09003 * 109.50070 * 302.42179 * 17 15 13 31 31 H 1.08995 * 109.46501 * 179.17754 * 18 17 15 32 32 H 1.09009 * 109.45500 * 299.14277 * 18 17 15 33 33 H 1.00898 * 111.00242 * 62.36287 * 19 18 17 34 34 H 1.09003 * 109.46829 * 59.99889 * 22 20 19 35 35 H 1.08992 * 109.46889 * 180.02562 * 22 20 19 36 36 H 1.09002 * 109.47175 * 300.00706 * 22 20 19 37 37 H 1.09000 * 109.50390 * 60.75234 * 23 20 19 38 38 H 1.08997 * 109.50325 * 180.87997 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.8064 -1.1208 4.0082 10 1 1.8269 -0.4198 5.2205 11 1 1.8258 -2.5201 4.0078 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6489 -0.7288 -3.5877 16 1 1.9756 -1.5493 -3.8357 17 6 4.0525 -1.2807 -3.3233 18 6 4.5820 -1.9475 -4.5949 19 7 4.6205 -0.9643 -5.6850 20 6 3.2768 -0.4561 -5.9893 21 1 2.6267 -1.2878 -6.2606 22 6 3.3570 0.5300 -7.1565 23 6 2.7083 0.2553 -4.7594 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7095 1.1618 3.4843 28 1 2.2491 -1.6318 -1.1526 29 1 4.0093 -2.0146 -2.5184 30 1 4.7163 -0.4649 -3.0367 31 1 5.5870 -2.3285 -4.4138 32 1 3.9257 -2.7723 -4.8727 33 1 5.2525 -0.2084 -5.4680 34 1 3.7611 0.0233 -8.0330 35 1 2.3598 0.9076 -7.3822 36 1 4.0075 1.3616 -6.8856 37 1 3.3506 1.0956 -4.4957 38 1 1.7049 0.6188 -4.9806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300056420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:26 Heat of formation + Delta-G solvation = -84.222460 kcal Electronic energy + Delta-G solvation = -17739.969303 eV Core-core repulsion = 15001.095885 eV Total energy + Delta-G solvation = -2738.873418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.19875 -39.18925 -36.73786 -34.50789 -33.62016 -32.70606 -30.66245 -27.93453 -27.38043 -25.39668 -23.18622 -22.55909 -21.50229 -20.91368 -18.88450 -17.47162 -17.22417 -16.73639 -16.18801 -16.05925 -15.41346 -15.18861 -14.98575 -14.64500 -14.43517 -13.76782 -13.60587 -13.44648 -13.03412 -12.94765 -12.86619 -12.76890 -12.57344 -12.47681 -12.29929 -12.17497 -11.85711 -11.64640 -11.42290 -11.14781 -10.74239 -10.58350 -9.78673 -9.30972 -8.19656 -6.38025 1.43529 1.45821 1.53759 1.78557 2.33589 2.60229 3.10542 3.34996 3.70072 3.75321 3.85485 4.08120 4.28936 4.35703 4.49078 4.61789 4.63341 4.73295 4.80680 4.86197 4.87479 4.99835 5.04350 5.06241 5.12556 5.20422 5.34132 5.36304 5.40162 5.58368 5.65263 5.87418 6.06724 6.12986 6.47757 6.69676 6.94203 7.29928 7.53823 8.86565 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042255 B = 0.005266 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.491636 B = 5315.881116 C = 5772.960372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.007 1.007 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.703 5.703 13 C 0.497 3.503 14 O -0.605 6.605 15 C -0.097 4.097 16 H 0.114 0.886 17 C -0.143 4.143 18 C 0.066 3.934 19 N -0.681 5.681 20 C 0.090 3.910 21 H 0.090 0.910 22 C -0.141 4.141 23 C -0.124 4.124 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.009 0.991 27 H 0.266 0.734 28 H 0.404 0.596 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.341 0.659 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 -7.809 -14.757 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.011 0.989 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.352 5.352 13 C 0.285 3.715 14 O -0.487 6.487 15 C -0.118 4.118 16 H 0.132 0.868 17 C -0.183 4.183 18 C -0.063 4.063 19 N -0.310 5.310 20 C -0.020 4.020 21 H 0.108 0.892 22 C -0.198 4.198 23 C -0.164 4.164 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.028 0.972 27 H 0.075 0.925 28 H 0.239 0.761 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.159 0.841 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.908 -7.355 -15.149 17.846 hybrid contribution -0.208 0.509 2.070 2.142 sum 5.699 -6.846 -13.079 15.824 Atomic orbital electron populations 1.21891 0.98384 0.99450 0.99441 1.18329 0.91090 0.91773 0.82248 0.98860 1.21506 1.32724 1.13613 0.90757 0.90802 1.25833 0.94803 0.95559 1.02428 1.70051 1.36973 1.23957 1.24714 0.85366 0.78646 0.78726 0.77409 1.19531 1.21182 1.18721 1.46292 1.64984 1.14139 1.09749 1.21470 0.77091 0.87059 0.85890 1.90616 1.53374 1.18678 1.86062 1.21381 0.99426 0.99329 0.91673 0.86818 1.22264 0.93596 1.00902 1.01492 1.22053 1.02597 0.94956 0.86729 1.60816 1.09091 1.18969 1.42141 1.21579 0.90308 0.97199 0.92922 0.89233 1.21762 1.02167 0.98349 0.97560 1.22078 1.01987 0.97422 0.94945 0.93986 0.91509 0.97160 0.92524 0.76080 0.89935 0.93105 0.88789 0.89524 0.84075 0.90902 0.91804 0.93038 0.93381 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.89 9.26 71.98 0.67 -6.23 16 2 C 0.27 14.26 2.56 44.24 0.11 14.38 16 3 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 4 C -0.55 -29.21 8.73 25.60 0.22 -28.98 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.26 11.32 21.44 0.24 -53.02 16 8 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 12 N -0.70 -29.59 4.97 -446.09 -2.22 -31.80 16 13 C 0.50 20.21 7.12 87.66 0.62 20.84 16 14 O -0.61 -30.67 15.64 -3.02 -0.05 -30.72 16 15 C -0.10 -2.68 2.60 -11.46 -0.03 -2.71 16 16 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 17 C -0.14 -3.24 5.24 30.65 0.16 -3.07 16 18 C 0.07 1.12 6.55 86.33 0.57 1.69 16 19 N -0.68 -12.40 6.50 -491.68 -3.20 -15.60 16 20 C 0.09 1.75 3.03 44.94 0.14 1.88 16 21 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 22 C -0.14 -2.40 9.47 71.98 0.68 -1.72 16 23 C -0.12 -3.30 3.94 30.65 0.12 -3.18 16 24 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.40 14.19 8.01 -92.71 -0.74 13.45 16 29 H 0.08 1.76 7.65 -2.39 -0.02 1.74 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.34 6.20 8.79 -89.70 -0.79 5.41 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 1.47 8.04 -2.39 -0.02 1.45 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -67.17 304.85 0.03 -67.14 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.49 Total: 25.94 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 3.71 Total: -5.92 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -5.17 Total: -100.42 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -67.17 0.03 -67.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300056420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.081 kcal (2) G-P(sol) polarization free energy of solvation -67.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds