Wall clock time and date at job start Sun Mar 29 2020 22:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47443 * 2 1 4 4 C 1.50703 * 109.46979 * 240.00665 * 2 1 3 5 5 H 1.08005 * 119.99551 * 275.00099 * 4 2 1 6 6 C 1.37868 * 120.00466 * 95.00077 * 4 2 1 7 7 N 1.31512 * 120.00194 * 184.91737 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 4.91686 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.83080 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83526 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.83313 * 8 6 4 12 12 N 1.46490 * 109.47380 * 120.00197 * 2 1 3 13 13 C 1.34776 * 120.00268 * 275.00307 * 12 2 1 14 14 O 1.21281 * 120.00019 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00068 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.52674 * 60.12483 * 15 13 12 17 17 C 1.53112 * 109.52306 * 299.99251 * 15 13 12 18 18 C 1.53041 * 109.28105 * 182.44156 * 17 15 13 19 19 N 1.46847 * 109.52018 * 59.18127 * 18 17 15 20 20 C 1.46849 * 111.20071 * 298.25670 * 19 18 17 21 21 H 1.08999 * 109.46288 * 301.73395 * 20 19 18 22 22 C 1.52993 * 109.46330 * 181.75925 * 20 19 18 23 23 C 1.53040 * 109.51729 * 61.74353 * 20 19 18 24 24 H 1.09007 * 109.46978 * 295.03916 * 1 2 3 25 25 H 1.08995 * 109.47334 * 175.03157 * 1 2 3 26 26 H 1.09001 * 109.47232 * 55.02816 * 1 2 3 27 27 H 0.97002 * 119.99993 * 180.02562 * 7 6 4 28 28 H 0.97006 * 120.00104 * 94.99714 * 12 2 1 29 29 H 1.08991 * 109.50690 * 302.38667 * 17 15 13 30 30 H 1.09002 * 109.50162 * 62.46299 * 17 15 13 31 31 H 1.08997 * 109.46387 * 179.20116 * 18 17 15 32 32 H 1.09002 * 109.46194 * 299.17054 * 18 17 15 33 33 H 1.00899 * 111.00121 * 62.36133 * 19 18 17 34 34 H 1.08999 * 109.47524 * 60.00074 * 22 20 19 35 35 H 1.09003 * 109.47334 * 180.02562 * 22 20 19 36 36 H 1.09004 * 109.46859 * 300.00102 * 22 20 19 37 37 H 1.09005 * 109.49596 * 180.87956 * 23 20 19 38 38 H 1.08992 * 109.50548 * 60.76299 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7058 -0.6130 -3.4623 8 14 2.3136 1.8792 -2.3174 9 1 3.5992 2.3949 -1.7821 10 1 2.1058 2.3993 -3.6927 11 1 1.1987 2.3276 -1.4449 12 7 2.0183 -0.6906 1.1960 13 6 2.1471 -0.0183 2.3571 14 8 1.8590 1.1585 2.4115 15 6 2.6489 -0.7290 3.5876 16 1 3.6490 -1.1200 3.4001 17 6 1.7044 -1.8836 3.9326 18 6 2.1850 -2.5631 5.2170 19 7 2.2095 -1.5835 6.3107 20 6 3.1456 -0.4893 6.0228 21 1 4.1440 -0.8974 5.8656 22 6 3.1724 0.4827 7.2040 23 6 2.6935 0.2520 4.7625 24 1 -0.3633 0.4350 0.9312 25 1 -0.3634 -1.0237 -0.0890 26 1 -0.3634 0.5890 -0.8421 27 1 2.9369 -0.1046 -4.2554 28 1 2.2490 -1.6318 1.1525 29 1 0.6961 -1.4972 4.0808 30 1 1.7007 -2.6068 3.1171 31 1 1.5066 -3.3768 5.4732 32 1 3.1880 -2.9614 5.0637 33 1 1.2841 -1.2279 6.4984 34 1 3.4951 -0.0449 8.1015 35 1 3.8668 1.2952 6.9903 36 1 2.1739 0.8905 7.3616 37 1 3.3972 1.0543 4.5403 38 1 1.7008 0.6720 4.9238 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300056421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:28 Heat of formation + Delta-G solvation = -62.607794 kcal Electronic energy + Delta-G solvation = -17814.459737 eV Core-core repulsion = 15076.523601 eV Total energy + Delta-G solvation = -2737.936136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.91622 -37.99224 -34.90169 -33.01400 -32.22319 -31.73307 -29.53239 -27.10415 -25.35134 -24.17981 -22.12723 -21.02607 -20.28635 -19.42260 -17.37949 -16.07917 -15.89749 -15.27948 -15.20843 -14.47052 -14.38413 -13.86588 -13.74398 -13.17726 -12.77182 -12.57220 -12.53860 -12.27904 -12.06833 -11.75394 -11.62206 -11.42181 -11.12448 -11.00742 -10.83954 -10.67371 -10.61096 -10.46400 -9.89764 -9.23167 -9.17013 -8.72469 -8.42899 -8.08563 -6.25575 -4.29272 3.23299 3.28317 3.32223 3.39621 3.92847 4.17308 4.30640 4.70263 4.77646 4.94599 4.96369 5.15471 5.20140 5.29471 5.39696 5.51375 5.66190 5.69669 5.72726 5.80445 5.93849 5.99506 6.06795 6.16902 6.31388 6.33330 6.49984 6.66097 6.92217 6.93257 7.17181 7.26315 7.36671 7.55048 8.12607 8.56857 8.74911 8.99054 9.36786 10.86209 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040138 B = 0.005675 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.433156 B = 4932.351547 C = 5221.802606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.230 3.770 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.703 5.703 13 C 0.504 3.496 14 O -0.561 6.561 15 C -0.109 4.109 16 H 0.092 0.908 17 C -0.148 4.148 18 C 0.059 3.941 19 N -0.683 5.683 20 C 0.081 3.919 21 H 0.080 0.920 22 C -0.143 4.143 23 C -0.129 4.129 24 H 0.027 0.973 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.268 0.732 28 H 0.392 0.608 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.339 0.661 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 -2.244 17.187 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.127 3.873 3 H 0.067 0.933 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.186 1.186 12 N -0.351 5.351 13 C 0.289 3.711 14 O -0.441 6.441 15 C -0.131 4.131 16 H 0.110 0.890 17 C -0.187 4.187 18 C -0.070 4.070 19 N -0.312 5.312 20 C -0.029 4.029 21 H 0.098 0.902 22 C -0.201 4.201 23 C -0.168 4.168 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.226 0.774 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.057 -1.745 17.367 17.455 hybrid contribution -0.356 0.989 -1.074 1.503 sum -0.299 -0.755 16.293 16.313 Atomic orbital electron populations 1.22207 0.98677 1.00487 0.99139 1.19116 0.90871 0.94327 0.82951 0.93337 1.21010 1.45248 0.95600 0.94986 0.90376 1.24936 0.93612 0.98623 0.95146 1.69882 1.44772 1.36192 1.01694 0.86888 0.79769 0.85868 0.77334 1.19889 1.21140 1.18554 1.46635 1.64771 1.13805 1.09868 1.20524 0.78366 0.87415 0.84821 1.90629 1.51730 1.16299 1.85400 1.21372 1.00711 0.96732 0.94235 0.88950 1.22247 0.99152 0.97359 0.99982 1.22013 1.02005 0.94728 0.88290 1.60766 1.13070 1.16166 1.41210 1.21615 0.96883 0.90858 0.93536 0.90180 1.21778 1.01990 0.98520 0.97802 1.22082 1.03108 0.97898 0.93747 0.95366 0.93462 0.92967 0.92229 0.77447 0.91537 0.90630 0.90467 0.90729 0.84330 0.91988 0.92084 0.92759 0.90861 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.47 37.16 0.35 -2.90 16 2 C 0.23 5.53 2.22 -69.09 -0.15 5.37 16 3 H 0.05 1.28 4.73 -51.93 -0.25 1.04 16 4 C -0.53 -14.31 9.05 -34.44 -0.31 -14.62 16 5 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 8 Si 0.87 21.77 26.99 -169.99 -4.59 17.18 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.26 -6.43 6.82 56.52 0.39 -6.05 16 12 N -0.70 -14.18 4.97 -54.94 -0.27 -14.45 16 13 C 0.50 9.67 7.12 -10.99 -0.08 9.59 16 14 O -0.56 -12.93 15.64 5.56 0.09 -12.84 16 15 C -0.11 -1.52 2.59 -91.65 -0.24 -1.76 16 16 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.15 -1.70 5.24 -26.65 -0.14 -1.84 16 18 C 0.06 0.57 6.55 -3.83 -0.03 0.55 16 19 N -0.68 -6.83 6.50 -106.76 -0.69 -7.52 16 20 C 0.08 0.85 3.03 -67.72 -0.21 0.64 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.14 -1.31 9.47 37.15 0.35 -0.96 16 23 C -0.13 -1.68 3.94 -26.65 -0.11 -1.79 16 24 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.39 6.99 8.06 -40.82 -0.33 6.66 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.84 7.65 -51.93 -0.40 0.44 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.34 3.22 8.79 -39.29 -0.35 2.88 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 LS Contribution 304.59 15.07 4.59 4.59 Total: -1.00 -30.94 304.59 -7.14 -38.08 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.38 Total: 5.93 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.65 Total: -5.52 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.19 Total: -47.41 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.59 Total: 17.18 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.94 -7.14 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300056421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.530 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds