Wall clock time and date at job start Sun Mar 29 2020 22:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47443 * 2 1 4 4 C 1.50703 * 109.46979 * 240.00665 * 2 1 3 5 5 H 1.08005 * 119.99551 * 275.00099 * 4 2 1 6 6 C 1.37868 * 120.00466 * 95.00077 * 4 2 1 7 7 N 1.31512 * 120.00194 * 184.91737 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 4.91686 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.83080 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83526 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.83313 * 8 6 4 12 12 N 1.46490 * 109.47380 * 120.00197 * 2 1 3 13 13 C 1.34776 * 120.00268 * 275.00307 * 12 2 1 14 14 O 1.21281 * 120.00019 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00068 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.52674 * 60.12483 * 15 13 12 17 17 C 1.53112 * 109.52306 * 299.99251 * 15 13 12 18 18 C 1.53041 * 109.28105 * 182.44156 * 17 15 13 19 19 N 1.46847 * 109.52018 * 59.18127 * 18 17 15 20 20 C 1.46849 * 111.20071 * 298.25670 * 19 18 17 21 21 H 1.08999 * 109.46288 * 301.73395 * 20 19 18 22 22 C 1.52993 * 109.46330 * 181.75925 * 20 19 18 23 23 C 1.53040 * 109.51729 * 61.74353 * 20 19 18 24 24 H 1.09007 * 109.46978 * 295.03916 * 1 2 3 25 25 H 1.08995 * 109.47334 * 175.03157 * 1 2 3 26 26 H 1.09001 * 109.47232 * 55.02816 * 1 2 3 27 27 H 0.97002 * 119.99993 * 180.02562 * 7 6 4 28 28 H 0.97006 * 120.00104 * 94.99714 * 12 2 1 29 29 H 1.08991 * 109.50690 * 302.38667 * 17 15 13 30 30 H 1.09002 * 109.50162 * 62.46299 * 17 15 13 31 31 H 1.08997 * 109.46387 * 179.20116 * 18 17 15 32 32 H 1.09002 * 109.46194 * 299.17054 * 18 17 15 33 33 H 1.00899 * 111.00121 * 62.36133 * 19 18 17 34 34 H 1.08999 * 109.47524 * 60.00074 * 22 20 19 35 35 H 1.09003 * 109.47334 * 180.02562 * 22 20 19 36 36 H 1.09004 * 109.46859 * 300.00102 * 22 20 19 37 37 H 1.09005 * 109.49596 * 180.87956 * 23 20 19 38 38 H 1.08992 * 109.50548 * 60.76299 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7058 -0.6130 -3.4623 8 14 2.3136 1.8792 -2.3174 9 1 3.5992 2.3949 -1.7821 10 1 2.1058 2.3993 -3.6927 11 1 1.1987 2.3276 -1.4449 12 7 2.0183 -0.6906 1.1960 13 6 2.1471 -0.0183 2.3571 14 8 1.8590 1.1585 2.4115 15 6 2.6489 -0.7290 3.5876 16 1 3.6490 -1.1200 3.4001 17 6 1.7044 -1.8836 3.9326 18 6 2.1850 -2.5631 5.2170 19 7 2.2095 -1.5835 6.3107 20 6 3.1456 -0.4893 6.0228 21 1 4.1440 -0.8974 5.8656 22 6 3.1724 0.4827 7.2040 23 6 2.6935 0.2520 4.7625 24 1 -0.3633 0.4350 0.9312 25 1 -0.3634 -1.0237 -0.0890 26 1 -0.3634 0.5890 -0.8421 27 1 2.9369 -0.1046 -4.2554 28 1 2.2490 -1.6318 1.1525 29 1 0.6961 -1.4972 4.0808 30 1 1.7007 -2.6068 3.1171 31 1 1.5066 -3.3768 5.4732 32 1 3.1880 -2.9614 5.0637 33 1 1.2841 -1.2279 6.4984 34 1 3.4951 -0.0449 8.1015 35 1 3.8668 1.2952 6.9903 36 1 2.1739 0.8905 7.3616 37 1 3.3972 1.0543 4.5403 38 1 1.7008 0.6720 4.9238 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300056421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:27 Heat of formation + Delta-G solvation = -85.429757 kcal Electronic energy + Delta-G solvation = -17815.449371 eV Core-core repulsion = 15076.523601 eV Total energy + Delta-G solvation = -2738.925770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.23618 -39.22193 -36.74181 -34.51900 -33.76077 -32.74419 -31.24702 -27.93666 -27.37781 -25.39791 -23.11044 -22.42938 -21.52529 -21.00327 -19.22239 -17.72692 -17.37498 -16.61742 -16.10527 -16.05469 -15.59786 -15.23435 -14.88900 -14.68839 -14.51362 -14.31017 -13.77381 -13.45871 -13.20568 -13.09088 -12.92323 -12.84266 -12.58929 -12.50499 -12.45740 -11.91882 -11.85860 -11.65000 -11.42470 -11.27039 -10.89693 -10.72060 -9.84254 -9.30823 -8.42513 -6.48612 1.25325 1.30053 1.40500 1.74508 2.23328 2.42922 2.99964 3.34851 3.69949 3.73622 3.84775 4.08160 4.28591 4.34177 4.40793 4.49581 4.62911 4.64849 4.69699 4.77371 4.81739 4.86846 4.99675 5.03221 5.07764 5.12344 5.20119 5.32092 5.34518 5.36129 5.41284 5.72290 6.09076 6.12744 6.49678 6.56077 6.87999 7.17705 7.44098 8.72504 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040138 B = 0.005675 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.433156 B = 4932.351547 C = 5221.802606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.232 3.768 3 H 0.027 0.973 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.035 3.965 7 N -0.928 5.928 8 Si 0.926 3.074 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.259 1.259 12 N -0.702 5.702 13 C 0.500 3.500 14 O -0.601 6.601 15 C -0.100 4.100 16 H 0.108 0.892 17 C -0.142 4.142 18 C 0.065 3.935 19 N -0.681 5.681 20 C 0.089 3.911 21 H 0.085 0.915 22 C -0.140 4.140 23 C -0.124 4.124 24 H 0.034 0.966 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.271 0.729 28 H 0.405 0.595 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.343 0.657 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 -2.721 18.990 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.128 3.872 3 H 0.045 0.955 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.166 4.166 7 N -0.567 5.567 8 Si 0.751 3.249 9 H -0.201 1.201 10 H -0.200 1.200 11 H -0.184 1.184 12 N -0.351 5.351 13 C 0.288 3.712 14 O -0.483 6.483 15 C -0.122 4.122 16 H 0.126 0.874 17 C -0.181 4.181 18 C -0.065 4.065 19 N -0.310 5.310 20 C -0.021 4.021 21 H 0.103 0.897 22 C -0.198 4.198 23 C -0.164 4.164 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.240 0.760 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.161 0.839 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.043 -2.248 19.193 19.324 hybrid contribution -0.356 1.091 -1.596 1.966 sum -0.313 -1.157 17.596 17.637 Atomic orbital electron populations 1.22091 0.97174 1.01246 0.99268 1.18879 0.91962 0.93036 0.83329 0.95544 1.21179 1.44396 0.94818 0.96073 0.92406 1.25576 0.93763 1.02242 0.94997 1.69970 1.46558 1.37705 1.02441 0.86073 0.79536 0.81606 0.77702 1.20098 1.20022 1.18375 1.46404 1.64989 1.14369 1.09302 1.21419 0.77127 0.87012 0.85648 1.90608 1.53342 1.18281 1.86079 1.21396 1.01779 0.97296 0.91680 0.87375 1.22250 0.98009 0.96421 1.01440 1.22050 1.02829 0.94745 0.86863 1.60795 1.13278 1.15898 1.41071 1.21572 0.97086 0.90952 0.92520 0.89655 1.21756 1.02132 0.98379 0.97533 1.22072 1.01953 0.97589 0.94760 0.94684 0.92256 0.93481 0.91957 0.76006 0.92378 0.89995 0.88696 0.89974 0.83919 0.91056 0.91897 0.92789 0.92355 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 9.47 71.98 0.68 -5.36 16 2 C 0.23 11.06 2.22 44.25 0.10 11.16 16 3 H 0.03 1.40 4.73 -2.39 -0.01 1.38 16 4 C -0.53 -28.48 9.05 25.60 0.23 -28.25 16 5 H 0.06 3.31 8.06 -2.91 -0.02 3.28 16 6 C 0.03 1.97 5.47 84.65 0.46 2.43 16 7 N -0.93 -55.20 13.96 21.44 0.30 -54.90 16 8 Si 0.93 44.97 26.99 68.60 1.85 46.82 16 9 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.26 -12.42 6.82 99.48 0.68 -11.74 16 12 N -0.70 -27.75 4.97 -446.11 -2.22 -29.97 16 13 C 0.50 18.82 7.12 87.66 0.62 19.44 16 14 O -0.60 -27.65 15.64 -3.03 -0.05 -27.70 16 15 C -0.10 -2.63 2.59 -11.46 -0.03 -2.66 16 16 H 0.11 2.54 8.14 -2.38 -0.02 2.53 16 17 C -0.14 -2.92 5.24 30.65 0.16 -2.76 16 18 C 0.06 1.04 6.55 86.33 0.57 1.60 16 19 N -0.68 -11.66 6.50 -491.68 -3.20 -14.86 16 20 C 0.09 1.65 3.03 44.94 0.14 1.79 16 21 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 22 C -0.14 -2.27 9.47 71.98 0.68 -1.59 16 23 C -0.12 -3.08 3.94 30.65 0.12 -2.96 16 24 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.40 13.96 8.06 -92.70 -0.75 13.21 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.60 7.65 -2.39 -0.02 1.58 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.34 5.63 8.79 -89.69 -0.79 4.84 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.05 1.50 8.04 -2.39 -0.02 1.48 16 Total: -1.00 -65.90 304.59 -0.10 -66.00 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.52 Total: 21.76 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 3.73 Total: -7.15 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -5.12 Total: -99.73 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.85 Total: 46.82 kcal Total: -65.90 -0.10 -66.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300056421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.435 kcal (2) G-P(sol) polarization free energy of solvation -65.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds