Wall clock time and date at job start Sun Mar 29 2020 22:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.46808 * 2 1 4 4 O 1.21275 * 120.00297 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99379 * 179.97438 * 3 2 1 6 6 C 1.46928 * 120.63540 * 359.97438 * 5 3 2 7 7 C 1.53191 * 108.77441 * 126.39150 * 6 5 3 8 8 C 1.53035 * 109.31251 * 54.63907 * 7 6 5 9 9 H 1.09007 * 109.45061 * 178.62453 * 8 7 6 10 10 N 1.46497 * 109.46471 * 58.65281 * 8 7 6 11 11 C 1.36942 * 119.99951 * 84.93025 * 10 8 7 12 12 H 1.08002 * 119.99570 * 0.02562 * 11 10 8 13 13 C 1.38804 * 120.00161 * 180.02562 * 11 10 8 14 14 N 1.31624 * 119.99998 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00304 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47015 * 89.99484 * 15 13 11 17 17 H 1.48502 * 109.47061 * 209.99761 * 15 13 11 18 18 H 1.48500 * 109.46498 * 329.99333 * 15 13 11 19 19 C 1.53039 * 109.53695 * 298.63172 * 8 7 6 20 20 H 1.08996 * 109.50133 * 301.38216 * 19 8 7 21 21 C 1.53006 * 109.49875 * 181.31965 * 19 8 7 22 22 C 1.46931 * 120.60130 * 179.97438 * 5 3 2 23 23 H 1.09002 * 109.47019 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47250 * 300.00048 * 1 2 3 25 25 H 1.09008 * 109.46962 * 59.99954 * 1 2 3 26 26 H 1.08998 * 109.47250 * 239.99952 * 2 1 3 27 27 H 1.08997 * 109.46487 * 119.99893 * 2 1 3 28 28 H 1.08997 * 109.58150 * 6.60382 * 6 5 3 29 29 H 1.09001 * 109.70245 * 246.25165 * 6 5 3 30 30 H 1.09006 * 109.49749 * 294.68240 * 7 6 5 31 31 H 1.09006 * 109.52107 * 174.60679 * 7 6 5 32 32 H 0.97001 * 120.00223 * 264.93776 * 10 8 7 33 33 H 0.96997 * 120.00165 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47050 * 60.06493 * 21 19 8 35 35 H 1.09001 * 109.46801 * 180.02562 * 21 19 8 36 36 H 1.09001 * 109.46998 * 300.06202 * 21 19 8 37 37 H 1.09005 * 109.56284 * 113.80457 * 22 5 3 38 38 H 1.09001 * 109.61713 * 353.37860 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3245 0.5609 0.0017 7 6 5.2974 0.7554 -1.1655 8 6 5.9317 2.1448 -1.0695 9 1 6.6427 2.2764 -1.8852 10 7 6.6294 2.2754 0.2120 11 6 7.9152 1.8220 0.3409 12 1 8.4149 1.3685 -0.5023 13 6 8.5761 1.9452 1.5553 14 7 7.9672 2.4984 2.5828 15 14 10.3302 1.3274 1.7310 16 1 11.2763 2.4193 1.3880 17 1 10.5637 0.8917 3.1313 18 1 10.5449 0.1798 0.8132 19 6 4.8406 3.2134 -1.1671 20 1 4.3051 3.1017 -2.1099 21 6 5.4790 4.6025 -1.1041 22 6 3.8618 3.0471 0.0000 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7969 -0.3856 -0.1161 29 1 4.8770 0.5568 0.9412 30 1 4.7573 0.6663 -2.1081 31 1 6.0775 -0.0046 -1.1200 32 1 6.1807 2.6830 0.9693 33 1 8.4292 2.5848 3.4313 34 1 6.1761 4.7199 -1.9337 35 1 4.7014 5.3632 -1.1732 36 1 6.0142 4.7139 -0.1611 37 1 4.3760 3.2482 0.9398 38 1 3.0295 3.7409 -0.1193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309065765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:17 Heat of formation + Delta-G solvation = -37.670823 kcal Electronic energy + Delta-G solvation = -18242.031230 eV Core-core repulsion = 15505.176443 eV Total energy + Delta-G solvation = -2736.854788 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97707 -37.72513 -34.23575 -33.12894 -32.30739 -31.35307 -29.16541 -26.65404 -25.18457 -23.59412 -23.20843 -21.62788 -19.34135 -18.08280 -17.37833 -16.82347 -15.56148 -15.52022 -14.67968 -14.32069 -13.97057 -13.79922 -13.46208 -13.24045 -12.65144 -12.51922 -12.35469 -12.20347 -11.70886 -11.44933 -11.30176 -11.16531 -11.12001 -10.91787 -10.78302 -10.48097 -10.43731 -10.19885 -9.83273 -9.55826 -9.45403 -8.94026 -8.17337 -6.98788 -5.80366 -3.08871 2.91089 3.35643 3.40490 3.46139 3.47596 4.56187 4.73024 5.07395 5.13157 5.22556 5.33871 5.38060 5.49708 5.58184 5.61472 5.75656 5.78785 5.83445 5.95269 5.96484 6.08932 6.11030 6.20761 6.27312 6.32711 6.42927 6.51392 6.65904 6.69217 6.77749 6.94276 7.03048 7.67124 7.78908 8.38275 8.47380 9.49801 10.06821 10.41930 11.42124 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031161 B = 0.006587 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.352870 B = 4250.078201 C = 4608.034755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.144 4.144 3 C 0.509 3.491 4 O -0.557 6.557 5 N -0.603 5.603 6 C 0.113 3.887 7 C -0.150 4.150 8 C 0.178 3.822 9 H 0.050 0.950 10 N -0.719 5.719 11 C -0.237 4.237 12 H 0.069 0.931 13 C -0.012 4.012 14 N -0.933 5.933 15 Si 0.904 3.096 16 H -0.291 1.291 17 H -0.293 1.293 18 H -0.283 1.283 19 C -0.108 4.108 20 H 0.064 0.936 21 C -0.137 4.137 22 C 0.118 3.882 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 -4.202 -6.624 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C 0.298 3.702 4 O -0.437 6.437 5 N -0.335 5.335 6 C -0.009 4.009 7 C -0.191 4.191 8 C 0.068 3.932 9 H 0.068 0.932 10 N -0.361 5.361 11 C -0.368 4.368 12 H 0.087 0.913 13 C -0.208 4.208 14 N -0.581 5.581 15 Si 0.736 3.264 16 H -0.218 1.218 17 H -0.219 1.219 18 H -0.209 1.209 19 C -0.128 4.128 20 H 0.083 0.917 21 C -0.195 4.195 22 C -0.004 4.004 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.219 0.781 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.773 -3.786 -6.622 12.397 hybrid contribution 1.083 -0.349 0.417 1.212 sum -8.689 -4.135 -6.205 11.450 Atomic orbital electron populations 1.21518 0.93428 1.01125 1.03144 1.21640 0.98114 0.94521 1.04092 1.20696 0.81916 0.91623 0.75989 1.90640 1.55051 1.46662 1.51310 1.48169 1.05370 1.08000 1.71930 1.21723 0.90207 0.87734 1.01238 1.22524 0.98401 1.01968 0.96228 1.20212 0.91654 0.90583 0.90755 0.93185 1.42480 1.13183 1.72357 1.08081 1.19222 0.89750 1.31943 0.95931 0.91263 1.24704 0.98271 1.01713 0.96091 1.69651 1.36940 1.49684 1.01858 0.86234 0.85061 0.78322 0.76810 1.21817 1.21898 1.20851 1.21703 0.96510 0.96838 0.97748 0.91735 1.21669 0.99793 0.94695 1.03352 1.21634 0.97191 0.82386 0.99223 0.92417 0.92120 0.92208 0.89170 0.89066 0.91160 0.89759 0.93365 0.90774 0.78093 0.93518 0.92856 0.93796 0.91046 0.90790 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.20 37.16 0.34 -1.14 16 2 C -0.14 -1.70 4.77 -27.88 -0.13 -1.83 16 3 C 0.51 8.22 7.70 -10.98 -0.08 8.13 16 4 O -0.56 -10.72 15.39 5.56 0.09 -10.64 16 5 N -0.60 -9.88 2.97 -172.74 -0.51 -10.40 16 6 C 0.11 1.78 6.08 -3.71 -0.02 1.75 16 7 C -0.15 -2.44 5.78 -26.61 -0.15 -2.60 16 8 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 9 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 10 N -0.72 -16.47 3.64 -53.39 -0.19 -16.66 16 11 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 12 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 13 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 14 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 15 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.11 -1.80 2.67 -90.48 -0.24 -2.04 16 20 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 21 C -0.14 -2.24 9.05 37.16 0.34 -1.91 16 22 C 0.12 2.05 5.42 -3.69 -0.02 2.03 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.06 0.70 8.10 -51.92 -0.42 0.28 16 26 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 27 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 28 H 0.07 0.88 5.93 -51.93 -0.31 0.58 16 29 H 0.08 1.56 7.74 -51.93 -0.40 1.16 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.38 9.48 5.93 -40.82 -0.24 9.24 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 37 H 0.07 1.42 6.64 -51.93 -0.34 1.08 16 38 H 0.08 1.46 7.01 -51.93 -0.36 1.09 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -29.62 300.26 -7.00 -36.61 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.21 Total: 7.44 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -0.39 Total: -1.18 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.02 Total: -53.41 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.62 -7.00 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309065765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.057 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds