Wall clock time and date at job start Sun Mar 29 2020 22:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.46808 * 2 1 4 4 O 1.21275 * 120.00297 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99379 * 179.97438 * 3 2 1 6 6 C 1.46928 * 120.63540 * 359.97438 * 5 3 2 7 7 C 1.53191 * 108.77441 * 126.39150 * 6 5 3 8 8 C 1.53035 * 109.31251 * 54.63907 * 7 6 5 9 9 H 1.09007 * 109.45061 * 178.62453 * 8 7 6 10 10 N 1.46497 * 109.46471 * 58.65281 * 8 7 6 11 11 C 1.36942 * 119.99951 * 84.93025 * 10 8 7 12 12 H 1.08002 * 119.99570 * 0.02562 * 11 10 8 13 13 C 1.38804 * 120.00161 * 180.02562 * 11 10 8 14 14 N 1.31624 * 119.99998 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00304 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47015 * 89.99484 * 15 13 11 17 17 H 1.48502 * 109.47061 * 209.99761 * 15 13 11 18 18 H 1.48500 * 109.46498 * 329.99333 * 15 13 11 19 19 C 1.53039 * 109.53695 * 298.63172 * 8 7 6 20 20 H 1.08996 * 109.50133 * 301.38216 * 19 8 7 21 21 C 1.53006 * 109.49875 * 181.31965 * 19 8 7 22 22 C 1.46931 * 120.60130 * 179.97438 * 5 3 2 23 23 H 1.09002 * 109.47019 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47250 * 300.00048 * 1 2 3 25 25 H 1.09008 * 109.46962 * 59.99954 * 1 2 3 26 26 H 1.08998 * 109.47250 * 239.99952 * 2 1 3 27 27 H 1.08997 * 109.46487 * 119.99893 * 2 1 3 28 28 H 1.08997 * 109.58150 * 6.60382 * 6 5 3 29 29 H 1.09001 * 109.70245 * 246.25165 * 6 5 3 30 30 H 1.09006 * 109.49749 * 294.68240 * 7 6 5 31 31 H 1.09006 * 109.52107 * 174.60679 * 7 6 5 32 32 H 0.97001 * 120.00223 * 264.93776 * 10 8 7 33 33 H 0.96997 * 120.00165 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47050 * 60.06493 * 21 19 8 35 35 H 1.09001 * 109.46801 * 180.02562 * 21 19 8 36 36 H 1.09001 * 109.46998 * 300.06202 * 21 19 8 37 37 H 1.09005 * 109.56284 * 113.80457 * 22 5 3 38 38 H 1.09001 * 109.61713 * 353.37860 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3245 0.5609 0.0017 7 6 5.2974 0.7554 -1.1655 8 6 5.9317 2.1448 -1.0695 9 1 6.6427 2.2764 -1.8852 10 7 6.6294 2.2754 0.2120 11 6 7.9152 1.8220 0.3409 12 1 8.4149 1.3685 -0.5023 13 6 8.5761 1.9452 1.5553 14 7 7.9672 2.4984 2.5828 15 14 10.3302 1.3274 1.7310 16 1 11.2763 2.4193 1.3880 17 1 10.5637 0.8917 3.1313 18 1 10.5449 0.1798 0.8132 19 6 4.8406 3.2134 -1.1671 20 1 4.3051 3.1017 -2.1099 21 6 5.4790 4.6025 -1.1041 22 6 3.8618 3.0471 0.0000 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7969 -0.3856 -0.1161 29 1 4.8770 0.5568 0.9412 30 1 4.7573 0.6663 -2.1081 31 1 6.0775 -0.0046 -1.1200 32 1 6.1807 2.6830 0.9693 33 1 8.4292 2.5848 3.4313 34 1 6.1761 4.7199 -1.9337 35 1 4.7014 5.3632 -1.1732 36 1 6.0142 4.7139 -0.1611 37 1 4.3760 3.2482 0.9398 38 1 3.0295 3.7409 -0.1193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309065765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:16 Heat of formation + Delta-G solvation = -55.733147 kcal Electronic energy + Delta-G solvation = -18242.814472 eV Core-core repulsion = 15505.176443 eV Total energy + Delta-G solvation = -2737.638029 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.30244 -39.14205 -35.83414 -34.60749 -33.51386 -32.86284 -30.89598 -27.95327 -26.68461 -25.34533 -24.36728 -23.02802 -20.66063 -19.52390 -19.20635 -18.13261 -16.86540 -16.79467 -16.38162 -15.91967 -15.55748 -15.06876 -14.82209 -14.68640 -14.23446 -13.89756 -13.58996 -13.35301 -12.97922 -12.89255 -12.84018 -12.60424 -12.52706 -12.35218 -12.10028 -12.02459 -11.94092 -11.86132 -11.56667 -11.14729 -10.90176 -10.69800 -9.55898 -8.91266 -7.87934 -5.14201 1.50434 1.51251 1.58937 1.66669 2.09659 2.60791 3.46089 3.58953 3.88847 3.89645 4.07473 4.12026 4.21027 4.27376 4.35048 4.41981 4.52719 4.67709 4.72492 4.75235 4.86156 4.99416 5.00432 5.05483 5.08303 5.14413 5.25090 5.30335 5.32194 5.37997 5.48708 5.61374 5.67912 6.34030 6.52488 7.20778 7.41369 8.18008 8.41341 9.35617 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031161 B = 0.006587 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.352870 B = 4250.078201 C = 4608.034755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.139 4.139 3 C 0.502 3.498 4 O -0.594 6.594 5 N -0.604 5.604 6 C 0.119 3.881 7 C -0.142 4.142 8 C 0.171 3.829 9 H 0.047 0.953 10 N -0.725 5.725 11 C -0.225 4.225 12 H 0.076 0.924 13 C -0.074 4.074 14 N -0.971 5.971 15 Si 0.964 3.036 16 H -0.294 1.294 17 H -0.302 1.302 18 H -0.268 1.268 19 C -0.097 4.097 20 H 0.085 0.915 21 C -0.132 4.132 22 C 0.122 3.878 23 H 0.088 0.912 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.372 0.628 33 H 0.247 0.753 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.046 0.954 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.159 -5.968 -8.424 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.178 4.178 3 C 0.293 3.707 4 O -0.475 6.475 5 N -0.336 5.336 6 C -0.003 4.003 7 C -0.183 4.183 8 C 0.062 3.938 9 H 0.065 0.935 10 N -0.366 5.366 11 C -0.357 4.357 12 H 0.094 0.906 13 C -0.266 4.266 14 N -0.623 5.623 15 Si 0.795 3.205 16 H -0.221 1.221 17 H -0.229 1.229 18 H -0.193 1.193 19 C -0.117 4.117 20 H 0.103 0.897 21 C -0.190 4.190 22 C -0.001 4.001 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.136 0.864 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.206 0.794 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.389 -5.582 -8.479 14.525 hybrid contribution 1.206 0.232 0.907 1.527 sum -9.183 -5.351 -7.572 13.049 Atomic orbital electron populations 1.21521 0.92933 1.02691 1.01861 1.21738 0.98485 0.91455 1.06116 1.21560 0.81209 0.93246 0.74667 1.90624 1.55769 1.48309 1.52830 1.48249 1.05913 1.07540 1.71889 1.21697 0.90157 0.89164 0.99322 1.22396 0.98475 0.99597 0.97837 1.20459 0.92043 0.92840 0.88460 0.93507 1.42598 1.12598 1.72064 1.09340 1.19585 0.90712 1.29790 0.95639 0.90592 1.25392 1.01742 1.03247 0.96222 1.69811 1.38253 1.52124 1.02103 0.85267 0.81033 0.77978 0.76246 1.22145 1.22913 1.19330 1.21621 0.95713 0.96220 0.98176 0.89686 1.21608 1.00215 0.95371 1.01797 1.21453 0.96887 0.83510 0.98274 0.89360 0.93772 0.93210 0.86393 0.87402 0.87144 0.93164 0.90445 0.91331 0.79415 0.94411 0.92142 0.91873 0.94250 0.93544 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.20 71.98 0.66 -1.91 16 2 C -0.14 -2.80 4.77 29.85 0.14 -2.66 16 3 C 0.50 15.31 7.70 87.66 0.67 15.99 16 4 O -0.59 -22.44 15.39 -3.02 -0.05 -22.49 16 5 N -0.60 -18.97 2.97 -818.82 -2.43 -21.40 16 6 C 0.12 3.47 6.08 86.36 0.53 3.99 16 7 C -0.14 -4.26 5.78 30.67 0.18 -4.09 16 8 C 0.17 6.14 2.53 45.02 0.11 6.25 16 9 H 0.05 1.73 8.08 -2.38 -0.02 1.71 16 10 N -0.72 -33.43 3.64 -322.82 -1.18 -34.61 16 11 C -0.23 -11.66 9.93 84.03 0.83 -10.82 16 12 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 13 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 14 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 15 Si 0.96 44.88 29.55 68.60 2.03 46.91 16 16 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 C -0.10 -3.13 2.67 -10.70 -0.03 -3.16 16 20 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 21 C -0.13 -4.25 9.05 71.98 0.65 -3.60 16 22 C 0.12 4.23 5.42 86.37 0.47 4.70 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 25 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 26 H 0.12 1.79 7.69 -2.39 -0.02 1.77 16 27 H 0.11 1.88 7.94 -2.39 -0.02 1.86 16 28 H 0.11 2.33 5.93 -2.39 -0.01 2.32 16 29 H 0.05 1.84 7.74 -2.39 -0.02 1.82 16 30 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.37 18.99 5.93 -92.71 -0.55 18.44 16 33 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.51 7.53 -2.39 -0.02 1.49 16 37 H 0.05 1.86 6.64 -2.38 -0.02 1.85 16 38 H 0.08 2.78 7.01 -2.39 -0.02 2.76 16 Total: -1.00 -64.97 300.26 3.82 -61.15 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.48 Total: 27.01 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 4.69 Total: 1.09 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -3.33 Total: -113.67 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.97 3.82 -61.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309065765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.413 kcal (2) G-P(sol) polarization free energy of solvation -64.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds