Wall clock time and date at job start Sun Mar 29 2020 22:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47268 * 2 1 4 4 N 1.46496 * 109.47271 * 120.00083 * 2 1 3 5 5 C 1.34775 * 120.00477 * 155.00066 * 4 2 1 6 6 O 1.21283 * 120.00143 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00340 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47363 * 179.97438 * 7 5 4 9 9 N 1.46496 * 109.47499 * 179.97438 * 8 7 5 10 10 C 1.36943 * 120.00274 * 270.00442 * 9 8 7 11 11 H 1.07997 * 120.00300 * 144.92526 * 10 9 8 12 12 C 1.38817 * 119.99408 * 324.92321 * 10 9 8 13 13 N 1.31620 * 120.00119 * 337.93451 * 12 10 9 14 14 Si 1.86796 * 119.99584 * 157.93810 * 12 10 9 15 15 H 1.48491 * 109.47473 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47099 * 120.00190 * 14 12 10 17 17 H 1.48498 * 109.47119 * 239.99265 * 14 12 10 18 18 C 1.46504 * 120.00237 * 89.99677 * 9 8 7 19 19 C 1.53000 * 117.49921 * 183.24237 * 18 9 8 20 20 C 1.52998 * 117.49703 * 114.57839 * 18 9 8 21 21 H 1.08998 * 109.47206 * 300.00093 * 1 2 3 22 22 H 1.09006 * 109.46934 * 60.00106 * 1 2 3 23 23 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47396 * 240.00060 * 2 1 3 25 25 H 1.09009 * 109.47455 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47453 * 299.99682 * 3 2 1 27 27 H 1.08998 * 109.47083 * 59.99832 * 3 2 1 28 28 H 0.97001 * 120.00467 * 335.00048 * 4 2 1 29 29 H 1.09005 * 109.47190 * 59.99787 * 7 5 4 30 30 H 1.09004 * 109.47301 * 299.99996 * 7 5 4 31 31 H 1.09005 * 109.47091 * 59.99787 * 8 7 5 32 32 H 1.08998 * 109.47356 * 300.00242 * 8 7 5 33 33 H 0.96995 * 119.99672 * 175.91349 * 13 12 10 34 34 H 1.09004 * 115.54877 * 328.91115 * 18 9 8 35 35 H 1.08998 * 117.50153 * 359.97438 * 19 18 9 36 36 H 1.08995 * 117.49708 * 145.02504 * 19 18 9 37 37 H 1.08995 * 117.49988 * 214.98174 * 20 18 9 38 38 H 1.08997 * 117.49880 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1944 6 8 3.9359 -1.1987 0.2027 7 6 3.7424 -1.9701 2.4247 8 6 5.1447 -2.5210 2.1588 9 7 5.6331 -3.2115 3.3549 10 6 6.3342 -2.5200 4.3065 11 1 6.2199 -2.7715 5.3506 12 6 7.1918 -1.4958 3.9291 13 7 7.6721 -1.4574 2.7043 14 14 7.6643 -0.1723 5.1596 15 1 6.9948 -0.4412 6.4575 16 1 9.1369 -0.1776 5.3513 17 1 7.2367 1.1546 4.6481 18 6 5.3714 -4.6419 3.5332 19 6 5.8410 -5.2888 4.8377 20 6 6.5751 -5.5864 3.5278 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.4623 -0.7387 1.9895 29 1 3.0697 -2.7922 2.6692 30 1 3.7789 -1.2700 3.2594 31 1 5.8176 -1.6991 1.9140 32 1 5.1079 -3.2211 1.3242 33 1 8.2234 -0.7106 2.4228 34 1 4.4425 -5.0080 3.0958 35 1 6.3450 -4.6503 5.5632 36 1 5.2213 -6.0807 5.2583 37 1 6.4380 -6.5738 3.0873 38 1 7.5616 -5.1435 3.3912 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331783664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:12 Heat of formation + Delta-G solvation = -22.830791 kcal Electronic energy + Delta-G solvation = -17603.898376 eV Core-core repulsion = 14867.687101 eV Total energy + Delta-G solvation = -2736.211276 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77364 -38.73121 -36.94718 -35.47733 -33.48858 -32.39928 -30.35470 -28.08788 -26.68782 -24.34911 -22.97771 -22.08929 -21.54456 -21.18039 -18.43133 -17.72607 -17.23310 -17.06249 -16.35455 -16.25664 -15.62457 -15.12024 -14.88496 -14.38090 -14.12833 -13.79005 -13.61474 -13.17495 -13.10783 -13.00005 -12.89093 -12.59697 -12.44330 -12.28059 -12.02872 -11.90502 -11.86443 -11.50753 -11.33637 -10.92871 -10.72160 -10.47664 -10.04149 -8.54707 -7.78091 -5.45493 1.43404 1.46530 1.56911 1.74878 2.29229 2.51245 3.16248 3.41208 3.54684 3.92875 4.14316 4.19087 4.32118 4.34124 4.44558 4.46399 4.59568 4.62442 4.73880 4.75843 4.91395 4.94091 4.96036 5.04116 5.10282 5.26640 5.30876 5.34083 5.38771 5.55868 5.63795 5.69373 5.91212 6.44899 6.66423 7.13800 7.38903 7.85774 8.36088 9.12544 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020883 B = 0.006960 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.465682 B = 4021.943326 C = 4885.679801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.128 3.872 3 C -0.160 4.160 4 N -0.718 5.718 5 C 0.515 3.485 6 O -0.587 6.587 7 C -0.139 4.139 8 C 0.165 3.835 9 N -0.568 5.568 10 C -0.257 4.257 11 H 0.070 0.930 12 C -0.044 4.044 13 N -0.916 5.916 14 Si 0.954 3.046 15 H -0.259 1.259 16 H -0.295 1.295 17 H -0.292 1.292 18 C 0.097 3.903 19 C -0.173 4.173 20 C -0.225 4.225 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.023 0.977 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.414 0.586 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.017 0.983 33 H 0.248 0.752 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.237 1.044 -0.597 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.024 3.976 3 C -0.219 4.219 4 N -0.371 5.371 5 C 0.303 3.697 6 O -0.467 6.467 7 C -0.181 4.181 8 C 0.038 3.962 9 N -0.285 5.285 10 C -0.387 4.387 11 H 0.087 0.913 12 C -0.241 4.241 13 N -0.560 5.560 14 Si 0.782 3.218 15 H -0.183 1.183 16 H -0.222 1.222 17 H -0.218 1.218 18 C -0.011 4.011 19 C -0.211 4.211 20 C -0.266 4.266 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.251 0.749 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.616 1.192 -1.362 15.721 hybrid contribution 0.847 0.759 0.580 1.277 sum -14.769 1.951 -0.782 14.918 Atomic orbital electron populations 1.21994 0.90995 1.03251 1.04210 1.21043 0.96166 0.92451 0.87946 1.22164 0.99946 0.96379 1.03379 1.46114 1.17119 1.56317 1.17557 1.21134 0.81288 0.77831 0.89461 1.90657 1.57458 1.61449 1.37113 1.22091 0.99983 1.00960 0.95096 1.20459 0.92334 0.96849 0.86556 1.43664 1.60538 1.02626 1.21705 1.19339 1.16984 1.13751 0.88658 0.91290 1.25907 0.96314 1.03957 0.97930 1.70230 1.34847 1.30650 1.20283 0.85418 0.77182 0.79392 0.79775 1.18279 1.22249 1.21835 1.21606 0.95555 0.83544 1.00397 1.23039 1.04191 1.02816 0.91088 1.23276 0.98399 1.01447 1.03480 0.90561 0.89636 0.91637 0.92098 0.95777 0.89842 0.91266 0.74947 0.87815 0.89364 0.91627 0.96455 0.94319 0.86771 0.90554 0.86704 0.88128 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.38 71.98 0.68 -1.38 16 2 C 0.13 2.98 3.18 44.99 0.14 3.12 16 3 C -0.16 -3.74 9.48 71.98 0.68 -3.06 16 4 N -0.72 -18.78 5.08 -442.54 -2.25 -21.02 16 5 C 0.52 19.13 7.79 87.66 0.68 19.81 16 6 O -0.59 -27.56 15.65 -3.04 -0.05 -27.60 16 7 C -0.14 -5.29 6.02 29.85 0.18 -5.11 16 8 C 0.16 8.16 4.63 86.38 0.40 8.56 16 9 N -0.57 -28.27 2.78 -678.03 -1.88 -30.15 16 10 C -0.26 -13.85 8.63 84.03 0.73 -13.12 16 11 H 0.07 3.63 6.55 -2.91 -0.02 3.62 16 12 C -0.04 -2.47 4.96 84.86 0.42 -2.05 16 13 N -0.92 -56.07 11.33 21.65 0.25 -55.83 16 14 Si 0.95 44.94 29.61 68.60 2.03 46.97 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 17 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 18 C 0.10 4.04 6.56 44.99 0.30 4.34 16 19 C -0.17 -6.44 9.80 30.62 0.30 -6.14 16 20 C -0.23 -9.17 10.36 30.62 0.32 -8.85 16 21 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.06 1.73 7.58 -2.38 -0.02 1.71 16 25 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.41 7.94 8.60 -92.71 -0.80 7.14 16 29 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 30 H 0.09 3.37 8.14 -2.38 -0.02 3.36 16 31 H 0.07 3.89 5.31 -2.38 -0.01 3.88 16 32 H 0.02 0.87 8.03 -2.39 -0.02 0.85 16 33 H 0.25 14.79 8.32 -92.71 -0.77 14.02 16 34 H 0.11 4.07 8.14 -2.38 -0.02 4.05 16 35 H 0.08 3.17 6.37 -2.39 -0.02 3.15 16 36 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 37 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -71.27 315.03 3.15 -68.11 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.23 Total: 23.39 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 4.82 Total: -3.87 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -3.89 Total: -107.01 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.60 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.27 3.15 -68.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331783664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.283 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds