Wall clock time and date at job start Sun Mar 29 2020 22:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 115.55135 * 2 1 4 4 C 1.52997 * 117.51649 * 214.28841 * 2 1 3 5 5 C 1.52999 * 60.00174 * 252.52249 * 4 2 1 6 6 H 1.08999 * 117.51810 * 252.51694 * 5 4 2 7 7 N 1.46502 * 117.49692 * 107.49183 * 5 4 2 8 8 C 1.34774 * 119.99824 * 136.37878 * 7 5 4 9 9 O 1.21586 * 120.00529 * 359.97438 * 8 7 5 10 10 N 1.34781 * 119.99877 * 179.97438 * 8 7 5 11 11 C 1.46500 * 120.00035 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46941 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47481 * 300.00205 * 12 11 10 14 14 C 1.53001 * 109.47297 * 60.00304 * 12 11 10 15 15 C 1.50702 * 109.47215 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99559 * 357.00202 * 15 12 11 17 17 C 1.37878 * 120.00114 * 177.00962 * 15 12 11 18 18 N 1.31511 * 120.00058 * 5.53865 * 17 15 12 19 19 Si 1.86799 * 119.99724 * 185.54090 * 17 15 12 20 20 H 1.48502 * 109.46987 * 84.99822 * 19 17 15 21 21 H 1.48505 * 109.47020 * 204.99810 * 19 17 15 22 22 H 1.48500 * 109.47412 * 324.99794 * 19 17 15 23 23 H 1.09004 * 109.47316 * 274.33557 * 1 2 3 24 24 H 1.08998 * 109.46716 * 34.33485 * 1 2 3 25 25 H 1.08997 * 109.47171 * 154.33551 * 1 2 3 26 26 H 1.09005 * 117.49849 * 145.03553 * 4 2 1 27 27 H 1.08992 * 117.50030 * 0.02562 * 4 2 1 28 28 H 0.97002 * 119.99740 * 316.37450 * 7 5 4 29 29 H 0.97003 * 119.99666 * 0.02562 * 10 8 7 30 30 H 1.08997 * 109.47082 * 60.00076 * 11 10 8 31 31 H 1.08993 * 109.47352 * 299.99896 * 11 10 8 32 32 H 1.09007 * 109.47143 * 53.92975 * 13 12 11 33 33 H 1.08998 * 109.47445 * 173.93474 * 13 12 11 34 34 H 1.08998 * 109.46971 * 293.93801 * 13 12 11 35 35 H 1.09003 * 109.47407 * 59.99394 * 14 12 11 36 36 H 1.08993 * 109.47581 * 179.97438 * 14 12 11 37 37 H 1.08996 * 109.47225 * 300.00054 * 14 12 11 38 38 H 0.96994 * 119.99681 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1211 -0.7644 5 6 2.2364 -1.1207 0.7656 6 1 3.1711 -0.8745 1.2694 7 7 1.3960 -2.1119 1.4420 8 6 1.8757 -2.7906 2.5029 9 8 3.0061 -2.5806 2.8985 10 7 1.1024 -3.7021 3.1255 11 6 1.6241 -4.4403 4.2784 12 6 0.5531 -5.4036 4.7942 13 6 -0.6862 -4.6111 5.2144 14 6 0.1768 -6.3888 3.6857 15 6 1.0895 -6.1626 5.9806 16 1 2.1095 -6.0118 6.3017 17 6 0.2780 -7.0495 6.6558 18 7 -0.9271 -7.3152 6.2012 19 14 0.8904 -7.8735 8.2164 20 1 0.6412 -6.9819 9.3775 21 1 0.1697 -9.1568 8.4140 22 1 2.3470 -8.1370 8.0982 23 1 -0.3634 0.0777 1.0247 24 1 -0.3633 0.8486 -0.5796 25 1 -0.3633 -0.9263 -0.4451 26 1 3.1721 -0.8753 -1.2675 27 1 1.6120 -1.8586 -1.2679 28 1 0.4942 -2.2796 1.1262 29 1 0.2007 -3.8699 2.8098 30 1 1.8917 -3.7385 5.0683 31 1 2.5072 -5.0046 3.9792 32 1 -1.0109 -3.9791 4.3877 33 1 -1.4866 -5.3018 5.4798 34 1 -0.4442 -3.9875 6.0749 35 1 1.0598 -6.9535 3.3863 36 1 -0.5857 -7.0754 4.0532 37 1 -0.2112 -5.8397 2.8279 38 1 -1.4981 -7.9388 6.6765 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331810982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:25 Heat of formation + Delta-G solvation = -18.447171 kcal Electronic energy + Delta-G solvation = -17473.973718 eV Core-core repulsion = 14737.952531 eV Total energy + Delta-G solvation = -2736.021187 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.78245 -37.82759 -36.23296 -33.33387 -32.51872 -30.62092 -28.59990 -25.71262 -25.58795 -24.83914 -22.15531 -21.06929 -20.03660 -18.76322 -18.24928 -16.11644 -15.77964 -15.26747 -14.94257 -14.61074 -14.30015 -13.58622 -13.30339 -12.95225 -12.86950 -12.60192 -12.37203 -12.15595 -11.62871 -11.46225 -11.18883 -11.05902 -10.82406 -10.67837 -10.35707 -10.20448 -10.13549 -9.78604 -9.60542 -9.29743 -8.78086 -8.71374 -8.38387 -8.14280 -6.01123 -4.09669 3.01706 3.30456 3.36769 3.40891 3.42512 3.92828 4.40050 4.56931 4.65912 4.82332 4.86274 5.11171 5.26180 5.56905 5.58363 5.66411 5.79806 5.89046 6.07098 6.23333 6.38488 6.52721 6.69328 6.81994 6.83827 6.92367 7.04811 7.10510 7.31993 7.42845 7.57554 7.72086 8.01264 8.13462 8.39247 8.48808 8.89817 9.04703 9.55648 11.01006 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.051855 B = 0.004636 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.839690 B = 6037.714753 C = 6263.942383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.170 4.170 3 H 0.109 0.891 4 C -0.196 4.196 5 C 0.112 3.888 6 H 0.137 0.863 7 N -0.723 5.723 8 C 0.701 3.299 9 O -0.598 6.598 10 N -0.732 5.732 11 C 0.150 3.850 12 C 0.055 3.945 13 C -0.128 4.128 14 C -0.129 4.129 15 C -0.507 4.507 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.275 1.275 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.394 0.606 29 H 0.393 0.607 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.006 0.994 33 H 0.080 0.920 34 H 0.029 0.971 35 H 0.026 0.974 36 H 0.085 0.915 37 H 0.005 0.995 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 10.465 -11.648 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.190 4.190 3 H 0.127 0.873 4 C -0.235 4.235 5 C 0.004 3.996 6 H 0.154 0.846 7 N -0.377 5.377 8 C 0.401 3.599 9 O -0.477 6.477 10 N -0.386 5.386 11 C 0.027 3.973 12 C 0.054 3.946 13 C -0.185 4.185 14 C -0.187 4.187 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.200 1.200 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.228 0.772 29 H 0.228 0.772 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.024 0.976 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.568 10.482 -11.163 15.323 hybrid contribution -0.575 -0.599 0.450 0.944 sum -0.007 9.884 -10.713 14.576 Atomic orbital electron populations 1.21304 0.92831 1.01900 1.02138 1.22827 0.95842 0.95108 1.05204 0.87294 1.23602 1.02885 1.01315 0.95696 1.21410 0.96532 0.91412 0.90251 0.84580 1.44483 1.17459 1.42753 1.33011 1.16019 0.84794 0.79503 0.79624 1.90872 1.18607 1.70156 1.68083 1.45515 1.17323 1.41437 1.34369 1.21582 0.97808 0.93372 0.84489 1.18373 0.91006 0.91080 0.94091 1.21793 1.01071 0.98505 0.97169 1.21834 1.01187 1.00177 0.95477 1.20970 0.98297 1.23183 1.12060 0.92395 1.24871 0.94980 0.96152 0.97424 1.69826 1.08543 1.35206 1.38841 0.86595 0.78953 0.78650 0.83715 1.20633 1.21365 1.19951 0.91879 0.92046 0.92601 0.88280 0.88656 0.77181 0.77199 0.92882 0.92920 0.97525 0.90078 0.95188 0.95460 0.89650 0.97646 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.19 37.16 0.34 -0.68 16 2 C -0.17 -1.56 6.41 -90.62 -0.58 -2.14 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.20 -1.86 10.10 -26.73 -0.27 -2.13 16 5 C 0.11 1.35 6.41 -67.93 -0.44 0.92 16 6 H 0.14 1.87 7.40 -51.93 -0.38 1.49 16 7 N -0.72 -9.87 5.35 -58.67 -0.31 -10.18 16 8 C 0.70 12.78 8.57 -86.92 -0.74 12.04 16 9 O -0.60 -13.25 15.91 5.29 0.08 -13.17 16 10 N -0.73 -13.37 4.91 -65.23 -0.32 -13.69 16 11 C 0.15 3.27 4.50 -4.04 -0.02 3.25 16 12 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 13 C -0.13 -2.88 8.03 37.16 0.30 -2.58 16 14 C -0.13 -2.92 8.11 37.16 0.30 -2.62 16 15 C -0.51 -13.35 8.01 -34.44 -0.28 -13.62 16 16 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 17 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 18 N -0.89 -23.64 9.45 55.43 0.52 -23.12 16 19 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.43 7.61 -51.93 -0.40 0.03 16 26 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 28 H 0.39 4.40 7.71 -40.82 -0.31 4.08 16 29 H 0.39 6.41 6.17 -40.82 -0.25 6.15 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.01 0.12 6.71 -51.92 -0.35 -0.23 16 33 H 0.08 2.00 6.25 -51.93 -0.32 1.68 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 2.13 6.10 -51.93 -0.32 1.82 16 37 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 38 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 305.49 15.07 4.60 4.60 Total: -1.00 -29.07 305.49 -8.03 -37.10 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.03 Total: 7.35 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.55 Total: -4.68 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.11 Total: -46.99 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.07 -8.03 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331810982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.650 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds