Wall clock time and date at job start Sun Mar 29 2020 22:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 115.54909 * 2 1 4 4 C 1.52998 * 117.50214 * 145.66365 * 2 1 3 5 5 C 1.53002 * 117.50394 * 214.32715 * 2 1 3 6 6 H 1.09005 * 117.49007 * 359.97438 * 5 2 1 7 7 N 1.46489 * 117.50118 * 144.99739 * 5 2 1 8 8 C 1.34780 * 119.99839 * 205.00338 * 7 5 2 9 9 O 1.21589 * 120.00409 * 359.97438 * 8 7 5 10 10 N 1.34784 * 120.00131 * 179.97438 * 8 7 5 11 11 C 1.46495 * 120.00315 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47369 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46773 * 300.00053 * 12 11 10 14 14 C 1.52997 * 109.47436 * 59.99781 * 12 11 10 15 15 C 1.50699 * 109.47417 * 180.02562 * 12 11 10 16 16 H 1.08003 * 119.99924 * 359.97438 * 15 12 11 17 17 C 1.37871 * 120.00517 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99736 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00410 * 179.97438 * 17 15 12 20 20 H 1.48508 * 109.46804 * 89.99914 * 19 17 15 21 21 H 1.48502 * 109.47187 * 209.99832 * 19 17 15 22 22 H 1.48492 * 109.47027 * 330.00545 * 19 17 15 23 23 H 1.09002 * 109.47153 * 205.58505 * 1 2 3 24 24 H 1.09001 * 109.46832 * 85.58696 * 1 2 3 25 25 H 1.09004 * 109.47261 * 325.58677 * 1 2 3 26 26 H 1.08996 * 117.50260 * 214.97997 * 4 2 1 27 27 H 1.09004 * 117.49748 * 0.02562 * 4 2 1 28 28 H 0.96998 * 120.00436 * 25.00175 * 7 5 2 29 29 H 0.97006 * 119.99430 * 359.97438 * 10 8 7 30 30 H 1.09007 * 109.47108 * 300.00435 * 11 10 8 31 31 H 1.09005 * 109.46957 * 59.99716 * 11 10 8 32 32 H 1.08999 * 109.47399 * 60.00241 * 13 12 11 33 33 H 1.08999 * 109.46956 * 180.02562 * 13 12 11 34 34 H 1.09007 * 109.47351 * 299.99909 * 13 12 11 35 35 H 1.08998 * 109.46755 * 60.00308 * 14 12 11 36 36 H 1.08999 * 109.47230 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.47324 * 300.00622 * 14 12 11 38 38 H 0.97000 * 120.00064 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1206 0.7655 5 6 2.2366 -1.1207 -0.7653 6 1 1.6112 -1.8583 -1.2684 7 7 3.4930 -0.7900 -1.4420 8 6 3.8984 -1.5158 -2.5028 9 8 3.2215 -2.4454 -2.8980 10 7 5.0541 -1.2112 -3.1258 11 6 5.4951 -2.0005 -4.2785 12 6 6.8265 -1.4506 -4.7939 13 6 6.6466 0.0096 -5.2143 14 6 7.8772 -1.5363 -3.6852 15 6 7.2798 -2.2620 -5.9801 16 1 6.6785 -3.0878 -6.3310 17 6 8.4619 -1.9504 -6.6175 18 7 9.1939 -0.9446 -6.1905 19 14 9.0241 -2.9568 -8.0874 20 1 8.4829 -2.3575 -9.3337 21 1 10.5080 -2.9627 -8.1448 22 1 8.5283 -4.3499 -7.9522 23 1 -0.3633 -0.9269 0.4438 24 1 -0.3633 0.0791 -1.0246 25 1 -0.3634 0.8478 0.5808 26 1 3.1715 -0.8746 1.2686 27 1 1.6113 -1.8581 1.2687 28 1 4.0332 -0.0487 -1.1266 29 1 5.5940 -0.4694 -2.8108 30 1 5.6235 -3.0407 -3.9790 31 1 4.7462 -1.9397 -5.0683 32 1 6.3186 0.5969 -4.3566 33 1 7.5951 0.4013 -5.5819 34 1 5.8980 0.0708 -6.0042 35 1 8.0053 -2.5765 -3.3858 36 1 8.8257 -1.1441 -4.0523 37 1 7.5492 -0.9491 -2.8275 38 1 10.0258 -0.7256 -6.6386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331810985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:27 Heat of formation + Delta-G solvation = -37.710684 kcal Electronic energy + Delta-G solvation = -17331.104757 eV Core-core repulsion = 14594.248241 eV Total energy + Delta-G solvation = -2736.856516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11635 -38.90661 -37.90625 -35.03802 -34.08885 -32.43845 -29.09728 -27.55450 -27.43590 -26.60928 -23.21985 -21.91583 -21.59752 -20.58458 -19.48858 -17.78600 -17.62527 -16.63955 -16.44353 -15.92535 -15.45511 -14.79305 -14.72811 -14.61555 -14.29849 -13.98454 -13.69948 -13.22169 -13.09124 -12.89443 -12.69800 -12.58794 -12.42351 -12.24746 -12.12934 -11.97677 -11.47574 -11.40816 -11.18886 -10.95723 -10.69836 -10.39265 -10.09573 -9.44296 -8.01580 -6.17180 1.43501 1.46149 1.54462 1.73651 2.11052 2.47054 2.98111 3.22082 3.34074 3.81116 3.95732 4.09753 4.41638 4.45433 4.53928 4.69338 4.75091 4.94407 4.96213 4.98290 5.04387 5.06767 5.11880 5.20792 5.20969 5.38721 5.41852 5.60312 5.63903 5.68040 5.68204 6.07383 6.15988 6.22657 6.44555 6.86933 7.15120 7.50498 7.62379 8.97417 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058087 B = 0.004341 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.920047 B = 6448.205692 C = 6589.963721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.147 4.147 3 H 0.117 0.883 4 C -0.178 4.178 5 C 0.073 3.927 6 H 0.111 0.889 7 N -0.705 5.705 8 C 0.698 3.302 9 O -0.642 6.642 10 N -0.725 5.725 11 C 0.167 3.833 12 C 0.051 3.949 13 C -0.119 4.119 14 C -0.119 4.119 15 C -0.529 4.529 16 H 0.044 0.956 17 C 0.028 3.972 18 N -0.899 5.899 19 Si 0.946 3.054 20 H -0.279 1.279 21 H -0.282 1.282 22 H -0.276 1.276 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.411 0.589 29 H 0.406 0.594 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.555 5.300 13.228 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.167 4.167 3 H 0.135 0.865 4 C -0.217 4.217 5 C -0.034 4.034 6 H 0.129 0.871 7 N -0.359 5.359 8 C 0.398 3.602 9 O -0.524 6.524 10 N -0.380 5.380 11 C 0.043 3.957 12 C 0.051 3.949 13 C -0.177 4.177 14 C -0.177 4.177 15 C -0.568 4.568 16 H 0.063 0.937 17 C -0.171 4.171 18 N -0.538 5.538 19 Si 0.772 3.228 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.201 1.201 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.247 0.753 29 H 0.243 0.757 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.960 4.548 12.795 17.450 hybrid contribution 0.999 -0.067 -0.825 1.297 sum -9.961 4.481 11.970 16.204 Atomic orbital electron populations 1.21391 0.91479 1.03025 1.02116 1.22922 0.96479 0.94950 1.02354 0.86455 1.23725 1.03208 1.01553 0.93190 1.21582 0.87296 1.02653 0.91853 0.87071 1.44301 1.24594 1.35569 1.31474 1.16156 0.81510 0.82155 0.80355 1.90845 1.57943 1.34087 1.69555 1.45187 1.22433 1.36735 1.33626 1.21135 0.96254 0.93177 0.85146 1.18366 0.89377 0.93629 0.93562 1.21658 1.00891 0.97048 0.98095 1.21652 1.01707 0.98147 0.96170 1.21276 1.06377 1.15100 1.14046 0.93742 1.25447 0.96457 0.96033 0.99194 1.69908 1.14108 1.28569 1.41187 0.85751 0.77300 0.79326 0.80382 1.20483 1.20787 1.20095 0.91919 0.92643 0.90397 0.87656 0.87177 0.75275 0.75749 0.94680 0.94655 0.94456 0.91867 0.96391 0.96373 0.91874 0.94457 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 10.19 71.98 0.73 -0.93 16 2 C -0.15 -2.32 6.33 -10.79 -0.07 -2.39 16 3 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.18 -2.90 10.11 30.62 0.31 -2.59 16 5 C 0.07 1.68 6.15 45.02 0.28 1.95 16 6 H 0.11 3.15 7.40 -2.38 -0.02 3.13 16 7 N -0.71 -18.14 5.57 -457.69 -2.55 -20.69 16 8 C 0.70 25.16 8.57 179.05 1.53 26.69 16 9 O -0.64 -28.98 15.91 -4.00 -0.06 -29.04 16 10 N -0.72 -25.79 4.96 -478.52 -2.37 -28.17 16 11 C 0.17 7.34 4.50 86.38 0.39 7.73 16 12 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 13 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 14 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 15 C -0.53 -28.29 8.01 25.60 0.21 -28.09 16 16 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 17 C 0.03 1.50 5.15 84.65 0.44 1.94 16 18 N -0.90 -47.98 9.35 21.45 0.20 -47.78 16 19 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H 0.06 0.80 7.90 -2.39 -0.02 0.78 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.11 1.59 8.05 -2.38 -0.02 1.57 16 28 H 0.41 7.83 8.84 -92.71 -0.82 7.02 16 29 H 0.41 12.29 6.18 -92.70 -0.57 11.72 16 30 H 0.03 1.64 8.14 -2.38 -0.02 1.63 16 31 H 0.04 1.65 8.14 -2.38 -0.02 1.64 16 32 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 33 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 34 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 37 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 38 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -63.13 307.74 1.85 -61.28 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -0.34 Total: 22.33 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 4.95 Total: -2.76 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -4.72 Total: -96.64 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.06 Total: -29.04 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -63.13 1.85 -61.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331810985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.568 kcal (2) G-P(sol) polarization free energy of solvation -63.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds