Wall clock time and date at job start Sun Mar 29 2020 22:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47339 * 2 1 4 4 N 1.46499 * 109.47319 * 119.99765 * 2 1 3 5 5 C 1.34775 * 119.99915 * 154.99337 * 4 2 1 6 6 O 1.21587 * 120.00016 * 5.09025 * 5 4 2 7 7 N 1.34778 * 120.00039 * 185.08156 * 5 4 2 8 8 C 1.46925 * 120.63379 * 174.95984 * 7 5 4 9 9 C 1.53194 * 108.89363 * 233.56570 * 8 7 5 10 10 C 1.53070 * 109.29067 * 305.57332 * 9 8 7 11 11 C 1.50707 * 109.44190 * 181.23744 * 10 9 8 12 12 H 1.07998 * 119.99984 * 245.23893 * 11 10 9 13 13 C 1.37875 * 119.99769 * 65.23885 * 11 10 9 14 14 N 1.31518 * 120.00009 * 355.14222 * 13 11 10 15 15 Si 1.86802 * 120.00181 * 175.14473 * 13 11 10 16 16 H 1.48499 * 109.46814 * 94.99696 * 15 13 11 17 17 H 1.48499 * 109.47178 * 214.99793 * 15 13 11 18 18 H 1.48495 * 109.46904 * 335.00096 * 15 13 11 19 19 C 1.53044 * 109.66056 * 61.15686 * 10 9 8 20 20 C 1.46924 * 120.63134 * 354.98547 * 7 5 4 21 21 H 1.09003 * 109.47128 * 300.00111 * 1 2 3 22 22 H 1.09001 * 109.47030 * 59.99865 * 1 2 3 23 23 H 1.08997 * 109.47258 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47128 * 239.99889 * 2 1 3 25 25 H 1.08995 * 109.47351 * 59.99798 * 3 2 1 26 26 H 1.08997 * 109.47284 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47170 * 300.00049 * 3 2 1 28 28 H 0.96998 * 120.00122 * 335.00596 * 4 2 1 29 29 H 1.09002 * 109.58517 * 353.41629 * 8 7 5 30 30 H 1.08992 * 109.58744 * 113.70043 * 8 7 5 31 31 H 1.08999 * 109.50307 * 65.38621 * 9 8 7 32 32 H 1.08999 * 109.49605 * 185.48233 * 9 8 7 33 33 H 1.09000 * 109.34947 * 301.13098 * 10 9 8 34 34 H 0.97004 * 119.99831 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.49701 * 178.74571 * 19 10 9 36 36 H 1.09005 * 109.52172 * 58.66268 * 19 10 9 37 37 H 1.08996 * 109.59074 * 246.15568 * 20 7 5 38 38 H 1.09003 * 109.58307 * 6.43451 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 3.2403 -1.2592 1.1943 6 8 3.9739 -1.1204 0.2347 7 7 3.6490 -1.9815 2.2562 8 6 4.9312 -2.6983 2.2253 9 6 4.6865 -4.1683 2.5804 10 6 3.9500 -4.2490 3.9199 11 6 3.7344 -5.6946 4.2874 12 1 2.7326 -6.0947 4.3401 13 6 4.8160 -6.5062 4.5564 14 7 6.0382 -6.0465 4.3998 15 14 4.5455 -8.2589 5.1432 16 1 4.5915 -9.1825 3.9813 17 1 5.6104 -8.6269 6.1106 18 1 3.2196 -8.3605 5.8042 19 6 2.5962 -3.5444 3.8065 20 6 2.8206 -2.0677 3.4666 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.4622 -0.7387 1.9894 29 1 5.3636 -2.6308 1.2270 30 1 5.6146 -2.2561 2.9501 31 1 4.0786 -4.6337 1.8046 32 1 5.6415 -4.6882 2.6558 33 1 4.5485 -3.7637 4.6909 34 1 6.7991 -6.6176 4.5887 35 1 2.0647 -3.6228 4.7549 36 1 2.0063 -4.0134 3.0189 37 1 3.3310 -1.5757 4.2945 38 1 1.8614 -1.5817 3.2882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334242152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:23 Heat of formation + Delta-G solvation = -42.581571 kcal Electronic energy + Delta-G solvation = -17894.470120 eV Core-core repulsion = 15157.402387 eV Total energy + Delta-G solvation = -2737.067734 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.97385 -37.20208 -35.63828 -33.53645 -31.63752 -30.76672 -29.63701 -27.27016 -26.07488 -23.14913 -22.43594 -21.21300 -20.08938 -18.85338 -17.58350 -16.38930 -16.04421 -15.08619 -14.61129 -14.38610 -14.24666 -13.68307 -13.34762 -12.96951 -12.76949 -12.49111 -12.40056 -12.26219 -12.13782 -11.75845 -11.39691 -11.09466 -10.96007 -10.94342 -10.65034 -10.40596 -10.06336 -9.70437 -9.53184 -9.16378 -8.96140 -8.85593 -8.36253 -7.85153 -6.01395 -4.07183 3.06585 3.29179 3.36761 3.39588 3.62294 4.23995 4.42354 4.82912 5.03841 5.20103 5.28993 5.38369 5.48673 5.64435 5.70211 5.78308 5.82070 5.86861 6.02603 6.11801 6.25031 6.30923 6.44692 6.51429 6.63030 6.78232 6.85133 6.99748 7.18360 7.26163 7.53554 7.71685 7.93803 8.05278 8.37183 8.41529 8.96594 9.01087 9.57755 11.04838 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048235 B = 0.005278 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.353734 B = 5303.492187 C = 5577.211030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.155 3.845 3 C -0.163 4.163 4 N -0.749 5.749 5 C 0.705 3.295 6 O -0.602 6.602 7 N -0.619 5.619 8 C 0.127 3.873 9 C -0.120 4.120 10 C 0.049 3.951 11 C -0.514 4.514 12 H 0.054 0.946 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.890 3.110 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.123 4.123 20 C 0.113 3.887 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.393 0.607 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.230 11.332 -4.270 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 C -0.221 4.221 4 N -0.408 5.408 5 C 0.406 3.594 6 O -0.481 6.481 7 N -0.355 5.355 8 C 0.004 3.996 9 C -0.159 4.159 10 C 0.031 3.969 11 C -0.553 4.553 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.162 4.162 20 C -0.010 4.010 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.230 0.770 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.497 11.356 -4.952 15.023 hybrid contribution -0.398 -1.035 0.800 1.367 sum -8.895 10.322 -4.152 14.245 Atomic orbital electron populations 1.22077 0.94553 1.02581 1.02533 1.20704 0.93218 0.92608 0.88534 1.22202 1.02459 0.96093 1.01381 1.45434 1.17628 1.60662 1.17048 1.15896 0.81711 0.78593 0.83164 1.90850 1.54871 1.66854 1.35559 1.47441 1.22802 1.51014 1.14280 1.21746 0.82404 0.93891 1.01515 1.22021 1.03771 0.91520 0.98599 1.18640 0.89944 0.95005 0.93362 1.21177 0.92665 0.95028 1.46389 0.92777 1.24966 0.95239 0.98293 0.95421 1.69883 0.97744 1.36454 1.48705 0.86622 0.77863 0.85092 0.78666 1.20837 1.21204 1.19945 1.22012 1.01325 0.92588 1.00250 1.21704 0.93162 0.99179 0.86954 0.92274 0.91128 0.91966 0.89783 0.92863 0.91871 0.92114 0.77037 0.90648 0.92641 0.94384 0.88344 0.95275 0.92976 0.92150 0.92964 0.91973 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.38 37.16 0.35 -1.02 16 2 C 0.15 1.85 3.15 -67.93 -0.21 1.64 16 3 C -0.16 -1.79 9.48 37.16 0.35 -1.44 16 4 N -0.75 -10.49 4.99 -58.68 -0.29 -10.78 16 5 C 0.70 12.99 8.26 -86.92 -0.72 12.28 16 6 O -0.60 -13.08 15.45 5.29 0.08 -12.99 16 7 N -0.62 -11.50 2.97 -178.51 -0.53 -12.03 16 8 C 0.13 2.61 6.41 -3.71 -0.02 2.58 16 9 C -0.12 -2.81 5.20 -26.59 -0.14 -2.95 16 10 C 0.05 1.17 2.00 -91.71 -0.18 0.98 16 11 C -0.51 -13.72 8.49 -34.44 -0.29 -14.01 16 12 H 0.05 1.43 7.75 -52.49 -0.41 1.02 16 13 C 0.06 1.69 5.36 -17.82 -0.10 1.59 16 14 N -0.89 -24.89 11.52 55.43 0.64 -24.25 16 15 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 19 C -0.12 -2.38 5.31 -26.61 -0.14 -2.52 16 20 C 0.11 1.84 6.43 -3.71 -0.02 1.81 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.08 1.17 7.65 -51.93 -0.40 0.77 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.39 4.65 6.06 -40.82 -0.25 4.40 16 29 H 0.08 1.60 7.03 -51.93 -0.37 1.23 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 2.56 6.30 -51.93 -0.33 2.23 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.76 5.56 -51.93 -0.29 0.47 16 LS Contribution 301.60 15.07 4.55 4.55 Total: -1.00 -30.20 301.60 -7.95 -38.15 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.24 Total: 2.50 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.13 Total: -1.07 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.19 Total: -47.06 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.20 -7.95 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334242152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.433 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds