Wall clock time and date at job start Sun Mar 29 2020 22:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47339 * 2 1 4 4 N 1.46499 * 109.47319 * 119.99765 * 2 1 3 5 5 C 1.34775 * 119.99915 * 154.99337 * 4 2 1 6 6 O 1.21587 * 120.00016 * 5.09025 * 5 4 2 7 7 N 1.34778 * 120.00039 * 185.08156 * 5 4 2 8 8 C 1.46925 * 120.63379 * 174.95984 * 7 5 4 9 9 C 1.53194 * 108.89363 * 233.56570 * 8 7 5 10 10 C 1.53070 * 109.29067 * 305.57332 * 9 8 7 11 11 C 1.50707 * 109.44190 * 181.23744 * 10 9 8 12 12 H 1.07998 * 119.99984 * 245.23893 * 11 10 9 13 13 C 1.37875 * 119.99769 * 65.23885 * 11 10 9 14 14 N 1.31518 * 120.00009 * 355.14222 * 13 11 10 15 15 Si 1.86802 * 120.00181 * 175.14473 * 13 11 10 16 16 H 1.48499 * 109.46814 * 94.99696 * 15 13 11 17 17 H 1.48499 * 109.47178 * 214.99793 * 15 13 11 18 18 H 1.48495 * 109.46904 * 335.00096 * 15 13 11 19 19 C 1.53044 * 109.66056 * 61.15686 * 10 9 8 20 20 C 1.46924 * 120.63134 * 354.98547 * 7 5 4 21 21 H 1.09003 * 109.47128 * 300.00111 * 1 2 3 22 22 H 1.09001 * 109.47030 * 59.99865 * 1 2 3 23 23 H 1.08997 * 109.47258 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47128 * 239.99889 * 2 1 3 25 25 H 1.08995 * 109.47351 * 59.99798 * 3 2 1 26 26 H 1.08997 * 109.47284 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47170 * 300.00049 * 3 2 1 28 28 H 0.96998 * 120.00122 * 335.00596 * 4 2 1 29 29 H 1.09002 * 109.58517 * 353.41629 * 8 7 5 30 30 H 1.08992 * 109.58744 * 113.70043 * 8 7 5 31 31 H 1.08999 * 109.50307 * 65.38621 * 9 8 7 32 32 H 1.08999 * 109.49605 * 185.48233 * 9 8 7 33 33 H 1.09000 * 109.34947 * 301.13098 * 10 9 8 34 34 H 0.97004 * 119.99831 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.49701 * 178.74571 * 19 10 9 36 36 H 1.09005 * 109.52172 * 58.66268 * 19 10 9 37 37 H 1.08996 * 109.59074 * 246.15568 * 20 7 5 38 38 H 1.09003 * 109.58307 * 6.43451 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 3.2403 -1.2592 1.1943 6 8 3.9739 -1.1204 0.2347 7 7 3.6490 -1.9815 2.2562 8 6 4.9312 -2.6983 2.2253 9 6 4.6865 -4.1683 2.5804 10 6 3.9500 -4.2490 3.9199 11 6 3.7344 -5.6946 4.2874 12 1 2.7326 -6.0947 4.3401 13 6 4.8160 -6.5062 4.5564 14 7 6.0382 -6.0465 4.3998 15 14 4.5455 -8.2589 5.1432 16 1 4.5915 -9.1825 3.9813 17 1 5.6104 -8.6269 6.1106 18 1 3.2196 -8.3605 5.8042 19 6 2.5962 -3.5444 3.8065 20 6 2.8206 -2.0677 3.4666 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.4622 -0.7387 1.9894 29 1 5.3636 -2.6308 1.2270 30 1 5.6146 -2.2561 2.9501 31 1 4.0786 -4.6337 1.8046 32 1 5.6415 -4.6882 2.6558 33 1 4.5485 -3.7637 4.6909 34 1 6.7991 -6.6176 4.5887 35 1 2.0647 -3.6228 4.7549 36 1 2.0063 -4.0134 3.0189 37 1 3.3310 -1.5757 4.2945 38 1 1.8614 -1.5817 3.2882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334242152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:22 Heat of formation + Delta-G solvation = -61.325978 kcal Electronic energy + Delta-G solvation = -17895.282939 eV Core-core repulsion = 15157.402387 eV Total energy + Delta-G solvation = -2737.880552 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.40233 -38.71711 -36.88788 -35.35992 -33.24048 -32.31741 -31.12172 -28.04352 -27.91394 -24.85954 -24.00650 -22.46218 -21.51181 -20.41227 -19.05485 -18.33843 -17.37550 -16.54165 -16.46846 -15.71548 -15.40778 -15.04535 -14.89437 -14.57172 -14.35774 -13.99089 -13.64121 -13.44078 -13.15142 -13.01348 -12.88917 -12.80171 -12.46648 -12.26242 -12.15656 -11.93850 -11.85748 -11.39881 -11.27703 -10.93674 -10.80482 -10.40846 -10.17034 -9.37291 -8.07505 -6.20482 1.41825 1.43804 1.53415 1.73322 2.18369 2.45026 2.97969 3.20065 3.97403 4.08320 4.20552 4.26611 4.33981 4.37432 4.50395 4.59746 4.69605 4.79218 4.81712 4.91573 4.96356 4.98289 5.05485 5.19765 5.24283 5.28518 5.38789 5.46617 5.52506 5.65966 5.68551 5.98173 6.10074 6.11010 6.39124 6.91653 7.04774 7.47706 7.60527 8.97029 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048235 B = 0.005278 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.353734 B = 5303.492187 C = 5577.211030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 C -0.157 4.157 4 N -0.732 5.732 5 C 0.700 3.300 6 O -0.640 6.640 7 N -0.623 5.623 8 C 0.139 3.861 9 C -0.108 4.108 10 C 0.045 3.955 11 C -0.532 4.532 12 H 0.053 0.947 13 C 0.013 3.987 14 N -0.917 5.917 15 Si 0.950 3.050 16 H -0.282 1.282 17 H -0.284 1.284 18 H -0.266 1.266 19 C -0.115 4.115 20 C 0.118 3.882 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.407 0.593 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.067 0.933 33 H 0.005 0.995 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.656 12.378 -3.830 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 C -0.215 4.215 4 N -0.391 5.391 5 C 0.401 3.599 6 O -0.523 6.523 7 N -0.359 5.359 8 C 0.016 3.984 9 C -0.147 4.147 10 C 0.026 3.974 11 C -0.570 4.570 12 H 0.071 0.929 13 C -0.186 4.186 14 N -0.556 5.556 15 Si 0.777 3.223 16 H -0.208 1.208 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.153 4.153 20 C -0.005 4.005 21 H 0.096 0.904 22 H 0.108 0.892 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.246 0.754 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.983 12.423 -4.495 17.180 hybrid contribution 0.346 -1.345 0.634 1.527 sum -10.636 11.078 -3.861 15.835 Atomic orbital electron populations 1.22022 0.91302 1.03015 1.04403 1.20939 0.95630 0.92529 0.86625 1.22144 1.00299 0.95768 1.03315 1.45377 1.15921 1.59484 1.18294 1.16094 0.82679 0.78698 0.82387 1.90824 1.56317 1.68203 1.36923 1.47397 1.22324 1.50903 1.15322 1.21387 0.83843 0.92376 1.00842 1.21776 1.01743 0.93040 0.98133 1.18623 0.92236 0.94158 0.92374 1.21580 0.92594 0.96653 1.46211 0.92878 1.25722 0.95091 1.02071 0.95691 1.70016 0.98372 1.37723 1.49493 0.85660 0.78026 0.80567 0.78089 1.20777 1.20981 1.19024 1.21865 0.98388 0.94167 1.00915 1.21811 0.94975 0.97390 0.86301 0.90429 0.89238 0.92253 0.92331 0.91238 0.95121 0.89903 0.75435 0.91679 0.92397 0.95934 0.91498 0.97678 0.93095 0.90705 0.93508 0.90885 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.38 71.98 0.68 -1.36 16 2 C 0.15 3.21 3.15 44.99 0.14 3.35 16 3 C -0.16 -3.11 9.48 71.98 0.68 -2.42 16 4 N -0.73 -18.79 4.99 -457.82 -2.28 -21.07 16 5 C 0.70 25.16 8.26 179.05 1.48 26.64 16 6 O -0.64 -28.09 15.45 -3.99 -0.06 -28.15 16 7 N -0.62 -22.57 2.97 -836.93 -2.49 -25.06 16 8 C 0.14 5.83 6.41 86.36 0.55 6.39 16 9 C -0.11 -5.20 5.20 30.68 0.16 -5.04 16 10 C 0.04 2.15 2.00 -11.50 -0.02 2.12 16 11 C -0.53 -28.59 8.49 25.60 0.22 -28.37 16 12 H 0.05 2.79 7.75 -2.91 -0.02 2.77 16 13 C 0.01 0.71 5.36 84.65 0.45 1.16 16 14 N -0.92 -52.50 11.52 21.45 0.25 -52.25 16 15 Si 0.95 43.17 29.54 68.60 2.03 45.19 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 C -0.12 -4.26 5.31 30.67 0.16 -4.10 16 20 C 0.12 3.51 6.43 86.36 0.56 4.06 16 21 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 22 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 1.59 7.65 -2.39 -0.02 1.57 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.03 0.80 8.09 -2.39 -0.02 0.78 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.41 8.05 6.06 -92.71 -0.56 7.49 16 29 H 0.06 2.85 7.03 -2.39 -0.02 2.83 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 3.64 6.30 -2.39 -0.02 3.62 16 33 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 35 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.10 2.18 5.56 -2.39 -0.01 2.17 16 Total: -1.00 -67.09 301.60 2.96 -64.12 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.47 Total: 14.78 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.06 Total: 2.43 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -4.53 Total: -98.39 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.06 Total: -28.15 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.09 2.96 -64.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334242152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.797 kcal (2) G-P(sol) polarization free energy of solvation -67.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds