Wall clock time and date at job start Sun Mar 29 2020 22:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 110.00223 * 2 1 4 4 C 1.54325 * 109.88613 * 238.89790 * 2 1 3 5 5 C 1.55150 * 102.94278 * 262.78103 * 4 2 1 6 6 C 1.52995 * 111.00969 * 82.56801 * 5 4 2 7 7 C 1.53010 * 111.00432 * 206.42364 * 5 4 2 8 8 C 1.55133 * 101.48887 * 324.32944 * 5 4 2 9 9 N 1.47033 * 109.87980 * 121.09326 * 2 1 3 10 10 C 1.34776 * 125.64490 * 300.43845 * 9 2 1 11 11 O 1.21583 * 119.99971 * 359.97438 * 10 9 2 12 12 N 1.34773 * 119.99472 * 180.02562 * 10 9 2 13 13 C 1.46510 * 119.99868 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47055 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99947 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99845 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00069 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00107 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47182 * 179.97438 * 18 16 14 20 20 H 1.48505 * 109.47021 * 299.99489 * 18 16 14 21 21 H 1.48498 * 109.47401 * 59.99409 * 18 16 14 22 22 H 1.08998 * 109.47601 * 305.06190 * 1 2 3 23 23 H 1.09003 * 109.46993 * 65.06014 * 1 2 3 24 24 H 1.09003 * 109.47803 * 185.05983 * 1 2 3 25 25 H 1.09004 * 110.71359 * 21.14238 * 4 2 1 26 26 H 1.08997 * 110.72055 * 144.23152 * 4 2 1 27 27 H 1.09007 * 109.46832 * 52.78504 * 6 5 4 28 28 H 1.08996 * 109.47808 * 172.78012 * 6 5 4 29 29 H 1.09004 * 109.47626 * 292.78638 * 6 5 4 30 30 H 1.08996 * 109.46792 * 59.99431 * 7 5 4 31 31 H 1.08996 * 109.47367 * 180.02562 * 7 5 4 32 32 H 1.09000 * 109.46639 * 299.99677 * 7 5 4 33 33 H 1.09002 * 110.49482 * 278.45899 * 8 5 4 34 34 H 1.08988 * 110.34671 * 156.06251 * 8 5 4 35 35 H 0.97001 * 120.00704 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.46453 * 59.99677 * 13 12 10 37 37 H 1.08997 * 109.47152 * 300.00510 * 13 12 10 38 38 H 0.97003 * 119.99428 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7497 -1.2426 5 6 2.3518 -2.1695 -0.6922 6 6 1.0791 -3.0175 -0.6472 7 6 3.4399 -2.8608 -1.5163 8 6 2.8612 -1.8466 0.7371 9 7 2.0299 -0.7141 1.1841 10 6 1.7752 -0.3843 2.4658 11 8 1.0774 0.5787 2.7186 12 7 2.2949 -1.1215 3.4672 13 6 2.0185 -0.7628 4.8605 14 6 2.7106 -1.7385 5.7772 15 1 3.2980 -2.5448 5.3633 16 6 2.5940 -1.6017 7.1442 17 7 1.8791 -0.6195 7.6482 18 14 3.4524 -2.8105 8.2804 19 1 3.1722 -2.4470 9.6927 20 1 2.9511 -4.1826 8.0132 21 1 4.9168 -2.7628 8.0387 22 1 -0.3634 0.5903 0.8411 23 1 -0.3633 0.4333 -0.9319 24 1 -0.3635 -1.0236 0.0906 25 1 1.2918 -0.7891 -2.0200 26 1 2.9639 -0.2814 -1.6200 27 1 0.5997 -3.0056 -1.6261 28 1 1.3349 -4.0430 -0.3805 29 1 0.3958 -2.6083 0.0970 30 1 4.3559 -2.2715 -1.4756 31 1 3.6281 -3.8542 -1.1093 32 1 3.1105 -2.9491 -2.5516 33 1 3.9122 -1.5589 0.7117 34 1 2.7177 -2.7047 1.3935 35 1 2.8519 -1.8896 3.2655 36 1 0.9436 -0.7976 5.0382 37 1 2.3867 0.2442 5.0564 38 1 1.4343 0.0089 7.0581 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334672143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:47 Heat of formation + Delta-G solvation = -69.934444 kcal Electronic energy + Delta-G solvation = -17926.496465 eV Core-core repulsion = 15188.242621 eV Total energy + Delta-G solvation = -2738.253843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.62698 -39.42730 -36.48042 -34.73861 -34.46248 -32.50528 -28.88957 -28.36294 -27.71060 -26.64391 -24.96261 -22.80714 -20.88404 -20.20776 -19.58354 -18.48060 -17.08853 -16.99233 -15.92865 -15.80356 -15.51228 -15.05349 -14.85681 -14.75972 -14.37700 -14.18494 -14.00213 -13.43318 -13.31673 -13.10231 -13.04820 -12.75780 -12.73118 -12.54182 -12.17220 -11.91220 -11.65828 -11.58379 -11.27402 -11.16882 -10.93900 -10.77630 -10.16721 -9.47886 -8.81911 -6.57030 1.54428 1.64251 1.66075 1.83784 2.10812 2.54668 3.06889 3.12434 3.39625 3.61359 3.88093 4.09040 4.24061 4.26042 4.45461 4.48634 4.67495 4.68194 4.75208 4.84051 4.90498 4.92036 4.94527 5.00151 5.05484 5.09987 5.22323 5.31230 5.40001 5.43025 5.45431 5.53576 5.59779 6.05770 6.12180 6.32392 7.05099 7.27466 7.59401 8.57468 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033211 B = 0.005630 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.885436 B = 4972.083965 C = 5536.234801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.055 0.945 4 C -0.105 4.105 5 C -0.067 4.067 6 C -0.139 4.139 7 C -0.129 4.129 8 C 0.098 3.902 9 N -0.631 5.631 10 C 0.706 3.294 11 O -0.645 6.645 12 N -0.720 5.720 13 C 0.274 3.726 14 C -0.629 4.629 15 H 0.074 0.926 16 C -0.031 4.031 17 N -0.928 5.928 18 Si 1.132 2.868 19 H -0.285 1.285 20 H -0.263 1.263 21 H -0.263 1.263 22 H 0.027 0.973 23 H 0.091 0.909 24 H 0.060 0.940 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.402 0.598 36 H -0.020 1.020 37 H -0.020 1.020 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -7.391 -21.875 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.073 0.927 4 C -0.143 4.143 5 C -0.067 4.067 6 C -0.196 4.196 7 C -0.187 4.187 8 C -0.024 4.024 9 N -0.369 5.369 10 C 0.407 3.593 11 O -0.528 6.528 12 N -0.374 5.374 13 C 0.150 3.850 14 C -0.667 4.667 15 H 0.092 0.908 16 C -0.230 4.230 17 N -0.564 5.564 18 Si 0.951 3.049 19 H -0.210 1.210 20 H -0.188 1.188 21 H -0.188 1.188 22 H 0.046 0.954 23 H 0.109 0.891 24 H 0.079 0.921 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.237 0.763 36 H -0.003 1.003 37 H -0.002 1.002 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.443 -7.036 -20.027 21.505 hybrid contribution -0.481 0.773 -1.102 1.429 sum 2.962 -6.263 -21.129 22.236 Atomic orbital electron populations 1.22220 0.95313 1.02127 1.02112 1.21583 0.94515 0.95687 0.84266 0.92666 1.22858 1.02927 0.93765 0.94748 1.21740 0.97036 0.95405 0.92560 1.21864 0.96036 0.99276 1.02400 1.21706 0.96695 1.00352 0.99916 1.22733 0.94784 0.88064 0.96838 1.47673 1.53816 1.32867 1.02563 1.15864 0.80331 0.82386 0.80699 1.90808 1.45890 1.32314 1.83763 1.45181 1.54423 1.32449 1.05351 1.18529 0.93837 0.94716 0.77879 1.22387 1.35328 1.15098 0.93851 0.90771 1.27712 0.96023 1.00217 0.99026 1.70904 1.30888 1.15528 1.39046 0.82775 0.75712 0.73096 0.73356 1.21012 1.18774 1.18777 0.95392 0.89072 0.92106 0.87575 0.88912 0.90309 0.91831 0.94505 0.91777 0.91827 0.90410 0.90532 0.91365 0.76285 1.00265 1.00228 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 8.87 71.98 0.64 -3.77 16 2 C 0.14 3.85 3.38 45.34 0.15 4.00 16 3 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.11 -1.71 5.48 31.78 0.17 -1.53 16 5 C -0.07 -1.10 0.96 -50.71 -0.05 -1.14 16 6 C -0.14 -2.35 8.27 71.98 0.60 -1.76 16 7 C -0.13 -1.42 8.67 71.99 0.62 -0.79 16 8 C 0.10 2.34 5.49 86.93 0.48 2.82 16 9 N -0.63 -20.98 3.00 -805.46 -2.42 -23.40 16 10 C 0.71 32.36 8.27 179.06 1.48 33.84 16 11 O -0.64 -35.42 15.32 -3.98 -0.06 -35.48 16 12 N -0.72 -34.03 5.51 -482.29 -2.66 -36.68 16 13 C 0.27 15.90 4.74 85.63 0.41 16.30 16 14 C -0.63 -35.91 9.28 25.60 0.24 -35.67 16 15 H 0.07 3.89 7.60 -2.91 -0.02 3.86 16 16 C -0.03 -1.81 5.46 84.65 0.46 -1.35 16 17 N -0.93 -58.96 13.65 21.45 0.29 -58.67 16 18 Si 1.13 48.77 29.90 68.60 2.05 50.82 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H 0.03 1.00 6.91 -2.39 -0.02 0.99 16 23 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 24 H 0.06 1.64 5.63 -2.39 -0.01 1.63 16 25 H 0.11 1.27 7.67 -2.38 -0.02 1.25 16 26 H 0.09 1.24 8.04 -2.39 -0.02 1.22 16 27 H 0.08 1.01 8.10 -2.38 -0.02 0.99 16 28 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 29 H 0.04 0.84 5.77 -2.39 -0.01 0.82 16 30 H 0.06 0.67 8.07 -2.39 -0.02 0.65 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 1.67 7.99 -2.39 -0.02 1.65 16 34 H 0.07 1.68 7.21 -2.39 -0.02 1.66 16 35 H 0.40 16.34 6.79 -92.71 -0.63 15.71 16 36 H -0.02 -1.31 8.01 -2.39 -0.02 -1.33 16 37 H -0.02 -1.29 8.01 -2.39 -0.02 -1.31 16 38 H 0.25 16.77 7.22 -92.71 -0.67 16.10 16 Total: -1.00 -76.67 301.23 2.92 -73.75 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.51 Total: 18.71 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.20 Total: 10.95 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -4.78 Total: -118.75 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.06 Total: -35.48 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.05 Total: 50.82 kcal Total: -76.67 2.92 -73.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334672143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.817 kcal (2) G-P(sol) polarization free energy of solvation -76.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds