Wall clock time and date at job start Sun Mar 29 2020 23:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.45622 * 2 1 4 4 C 1.53036 * 109.44756 * 240.03247 * 2 1 3 5 5 C 1.53192 * 109.31401 * 178.62050 * 4 2 1 6 6 N 1.46929 * 108.77302 * 54.63380 * 5 4 2 7 7 C 1.34772 * 120.62870 * 126.37693 * 6 5 4 8 8 O 1.21585 * 119.99841 * 185.08976 * 7 6 5 9 9 N 1.34777 * 120.00021 * 5.07995 * 7 6 5 10 10 C 1.46502 * 120.00107 * 185.12954 * 9 7 6 11 11 C 1.50695 * 109.47587 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99491 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00586 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99711 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00453 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47287 * 89.99825 * 15 13 11 17 17 H 1.48497 * 109.47262 * 209.99782 * 15 13 11 18 18 H 1.48497 * 109.46997 * 329.99793 * 15 13 11 19 19 C 1.46924 * 118.74010 * 306.39010 * 6 5 4 20 20 H 1.09005 * 109.70303 * 293.75644 * 19 6 5 21 21 C 1.52992 * 109.58836 * 173.39715 * 19 6 5 22 22 C 1.53040 * 109.45938 * 119.96784 * 2 1 3 23 23 H 1.09002 * 109.46731 * 300.03182 * 1 2 3 24 24 H 1.08992 * 109.47123 * 60.02610 * 1 2 3 25 25 H 1.08999 * 109.46880 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.49644 * 298.57176 * 4 2 1 27 27 H 1.09006 * 109.49717 * 58.63582 * 4 2 1 28 28 H 1.08991 * 109.58923 * 174.42451 * 5 4 2 29 29 H 1.09008 * 109.58439 * 294.70484 * 5 4 2 30 30 H 0.96999 * 120.00383 * 5.13833 * 9 7 6 31 31 H 1.08999 * 109.47377 * 300.01080 * 10 9 7 32 32 H 1.09003 * 109.46653 * 60.00597 * 10 9 7 33 33 H 0.97001 * 120.00285 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.47339 * 303.52437 * 21 19 6 35 35 H 1.09005 * 109.47287 * 63.52000 * 21 19 6 36 36 H 1.09003 * 109.47334 * 183.51812 * 21 19 6 37 37 H 1.09003 * 109.49227 * 61.42312 * 22 2 1 38 38 H 1.08990 * 109.52679 * 301.34136 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2501 5 6 3.5711 -0.6890 -1.2645 6 7 4.0676 -1.2493 -0.0003 7 6 4.9611 -2.2584 -0.0004 8 8 5.2943 -2.7753 1.0483 9 7 5.4849 -2.6945 -1.1632 10 6 6.3687 -3.8628 -1.1759 11 6 6.8151 -4.1398 -2.5883 12 1 6.4747 -3.5084 -3.3957 13 6 7.6578 -5.1991 -2.8499 14 7 8.0726 -5.9677 -1.8665 15 14 8.2116 -5.5420 -4.6006 16 1 9.4663 -4.7976 -4.8776 17 1 8.4527 -6.9978 -4.7674 18 1 7.1561 -5.1032 -5.5485 19 6 3.5715 -0.6889 1.2640 20 1 3.9146 0.3403 1.3695 21 6 4.0912 -1.5255 2.4348 22 6 2.0399 -0.7208 1.2501 23 1 -0.3633 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.6973 -1.7556 -1.2383 27 1 1.6564 -0.2210 -2.1399 28 1 3.9412 -1.2849 -2.0987 29 1 3.9142 0.3403 -1.3702 30 1 5.2768 -2.2348 -1.9916 31 1 7.2403 -3.6659 -0.5517 32 1 5.8320 -4.7285 -0.7877 33 1 8.6652 -6.7133 -2.0505 34 1 3.7934 -2.5652 2.2989 35 1 5.1787 -1.4611 2.4729 36 1 3.6719 -1.1462 3.3667 37 1 1.6976 -1.7556 1.2383 38 1 1.6575 -0.2212 2.1401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335132241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:32 Heat of formation + Delta-G solvation = -31.889419 kcal Electronic energy + Delta-G solvation = -17899.634688 eV Core-core repulsion = 15163.030601 eV Total energy + Delta-G solvation = -2736.604087 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.15538 -37.48828 -34.54046 -33.65041 -32.79446 -31.56906 -28.56389 -26.80394 -26.48936 -23.33504 -22.92003 -21.26692 -20.32724 -19.15091 -17.57336 -16.00029 -15.72886 -15.24515 -14.78038 -14.58852 -14.26128 -13.85146 -13.63275 -13.35711 -12.87360 -12.44920 -12.29461 -12.01441 -11.99012 -11.76651 -11.61053 -11.41381 -10.98140 -10.91251 -10.85693 -10.81886 -10.48291 -10.35517 -10.22001 -9.32927 -8.68200 -8.55040 -8.21817 -7.65827 -6.12625 -4.18957 3.24754 3.26370 3.32891 3.35815 3.97131 4.33724 4.62181 4.69036 4.75104 4.90876 5.11764 5.23454 5.31009 5.38699 5.44894 5.52515 5.56163 5.69624 5.76068 5.80408 5.96253 6.01513 6.04710 6.06859 6.10530 6.34879 6.57771 6.74721 7.08726 7.24018 7.56792 7.61859 7.63444 7.91737 8.06842 8.80437 8.97095 9.39104 9.53817 10.97666 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036045 B = 0.005478 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.614071 B = 5110.501936 C = 5690.262596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.129 4.129 5 C 0.112 3.888 6 N -0.635 5.635 7 C 0.696 3.304 8 O -0.591 6.591 9 N -0.732 5.732 10 C 0.267 3.733 11 C -0.541 4.541 12 H 0.061 0.939 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.163 3.837 20 H 0.060 0.940 21 C -0.132 4.132 22 C -0.126 4.126 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.384 0.616 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.185 12.863 2.009 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.167 4.167 5 C -0.012 4.012 6 N -0.375 5.375 7 C 0.398 3.602 8 O -0.471 6.471 9 N -0.386 5.386 10 C 0.146 3.854 11 C -0.579 4.579 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.059 3.941 20 H 0.078 0.922 21 C -0.189 4.189 22 C -0.164 4.164 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.218 0.782 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.786 12.248 2.811 17.927 hybrid contribution 0.198 -0.008 -1.449 1.462 sum -12.588 12.240 1.362 17.610 Atomic orbital electron populations 1.21823 0.95272 1.01806 1.01388 1.21108 0.95414 0.99398 0.95090 0.91271 1.21981 0.95480 1.01488 0.97795 1.21543 0.93949 0.98839 0.86833 1.47351 1.46087 1.37988 1.06080 1.16130 0.79337 0.79679 0.85103 1.90907 1.65811 1.60554 1.29805 1.45977 1.51465 1.34440 1.06726 1.18950 0.88150 0.81313 0.97029 1.21223 1.30064 1.13949 0.92676 0.92095 1.24934 0.95753 0.95617 0.97674 1.69981 1.33462 1.17479 1.31400 0.86426 0.79023 0.77536 0.83975 1.20491 1.21028 1.19803 1.20974 0.92530 0.96664 0.83937 0.92170 1.22172 1.02554 1.00461 0.93735 1.22097 0.95590 1.01314 0.97444 0.92819 0.92815 0.92709 0.91377 0.91061 0.90039 0.92026 0.78172 0.95727 0.95937 0.92505 0.90846 0.90715 0.94968 0.91449 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 2 C -0.09 -0.90 2.68 -90.58 -0.24 -1.14 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.13 -1.38 5.36 -26.61 -0.14 -1.52 16 5 C 0.11 1.43 6.35 -3.71 -0.02 1.40 16 6 N -0.64 -10.34 2.97 -170.91 -0.51 -10.84 16 7 C 0.70 14.82 8.21 -86.92 -0.71 14.10 16 8 O -0.59 -14.49 11.75 5.29 0.06 -14.43 16 9 N -0.73 -16.22 5.41 -66.42 -0.36 -16.58 16 10 C 0.27 7.26 5.43 -5.19 -0.03 7.24 16 11 C -0.54 -14.91 9.28 -34.45 -0.32 -15.23 16 12 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 15 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.16 2.31 3.49 -67.60 -0.24 2.07 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 C -0.13 -2.13 7.59 37.15 0.28 -1.85 16 22 C -0.13 -1.44 4.65 -26.61 -0.12 -1.57 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.06 5.74 -51.93 -0.30 0.77 16 29 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 30 H 0.38 7.44 5.91 -40.82 -0.24 7.19 16 31 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.07 1.38 6.79 -51.92 -0.35 1.02 16 35 H 0.07 1.40 6.70 -51.93 -0.35 1.05 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 298.86 15.07 4.50 4.50 Total: -1.00 -31.46 298.86 -8.16 -39.62 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.27 Total: 3.06 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.30 Total: 4.31 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.13 Total: -53.09 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.06 Total: -14.43 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.46 -8.16 -39.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335132241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.735 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds