Wall clock time and date at job start Sun Mar 29 2020 23:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.45622 * 2 1 4 4 C 1.53036 * 109.44756 * 240.03247 * 2 1 3 5 5 C 1.53192 * 109.31401 * 178.62050 * 4 2 1 6 6 N 1.46929 * 108.77302 * 54.63380 * 5 4 2 7 7 C 1.34772 * 120.62870 * 126.37693 * 6 5 4 8 8 O 1.21585 * 119.99841 * 185.08976 * 7 6 5 9 9 N 1.34777 * 120.00021 * 5.07995 * 7 6 5 10 10 C 1.46502 * 120.00107 * 185.12954 * 9 7 6 11 11 C 1.50695 * 109.47587 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99491 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00586 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99711 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00453 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47287 * 89.99825 * 15 13 11 17 17 H 1.48497 * 109.47262 * 209.99782 * 15 13 11 18 18 H 1.48497 * 109.46997 * 329.99793 * 15 13 11 19 19 C 1.46924 * 118.74010 * 306.39010 * 6 5 4 20 20 H 1.09005 * 109.70303 * 293.75644 * 19 6 5 21 21 C 1.52992 * 109.58836 * 173.39715 * 19 6 5 22 22 C 1.53040 * 109.45938 * 119.96784 * 2 1 3 23 23 H 1.09002 * 109.46731 * 300.03182 * 1 2 3 24 24 H 1.08992 * 109.47123 * 60.02610 * 1 2 3 25 25 H 1.08999 * 109.46880 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.49644 * 298.57176 * 4 2 1 27 27 H 1.09006 * 109.49717 * 58.63582 * 4 2 1 28 28 H 1.08991 * 109.58923 * 174.42451 * 5 4 2 29 29 H 1.09008 * 109.58439 * 294.70484 * 5 4 2 30 30 H 0.96999 * 120.00383 * 5.13833 * 9 7 6 31 31 H 1.08999 * 109.47377 * 300.01080 * 10 9 7 32 32 H 1.09003 * 109.46653 * 60.00597 * 10 9 7 33 33 H 0.97001 * 120.00285 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.47339 * 303.52437 * 21 19 6 35 35 H 1.09005 * 109.47287 * 63.52000 * 21 19 6 36 36 H 1.09003 * 109.47334 * 183.51812 * 21 19 6 37 37 H 1.09003 * 109.49227 * 61.42312 * 22 2 1 38 38 H 1.08990 * 109.52679 * 301.34136 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2501 5 6 3.5711 -0.6890 -1.2645 6 7 4.0676 -1.2493 -0.0003 7 6 4.9611 -2.2584 -0.0004 8 8 5.2943 -2.7753 1.0483 9 7 5.4849 -2.6945 -1.1632 10 6 6.3687 -3.8628 -1.1759 11 6 6.8151 -4.1398 -2.5883 12 1 6.4747 -3.5084 -3.3957 13 6 7.6578 -5.1991 -2.8499 14 7 8.0726 -5.9677 -1.8665 15 14 8.2116 -5.5420 -4.6006 16 1 9.4663 -4.7976 -4.8776 17 1 8.4527 -6.9978 -4.7674 18 1 7.1561 -5.1032 -5.5485 19 6 3.5715 -0.6889 1.2640 20 1 3.9146 0.3403 1.3695 21 6 4.0912 -1.5255 2.4348 22 6 2.0399 -0.7208 1.2501 23 1 -0.3633 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.6973 -1.7556 -1.2383 27 1 1.6564 -0.2210 -2.1399 28 1 3.9412 -1.2849 -2.0987 29 1 3.9142 0.3403 -1.3702 30 1 5.2768 -2.2348 -1.9916 31 1 7.2403 -3.6659 -0.5517 32 1 5.8320 -4.7285 -0.7877 33 1 8.6652 -6.7133 -2.0505 34 1 3.7934 -2.5652 2.2989 35 1 5.1787 -1.4611 2.4729 36 1 3.6719 -1.1462 3.3667 37 1 1.6976 -1.7556 1.2383 38 1 1.6575 -0.2212 2.1401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335132241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:32 Heat of formation + Delta-G solvation = -52.578405 kcal Electronic energy + Delta-G solvation = -17900.531830 eV Core-core repulsion = 15163.030601 eV Total energy + Delta-G solvation = -2737.501229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.59023 -38.80630 -36.38408 -34.94074 -34.53103 -33.07922 -29.85483 -28.62175 -27.56818 -24.93225 -24.28538 -22.70586 -21.41902 -20.65388 -19.13565 -17.91995 -17.31019 -16.71328 -16.48688 -15.63224 -15.49801 -15.21316 -14.96641 -14.63572 -14.45343 -14.01480 -13.77998 -13.43873 -13.33421 -13.08056 -12.86285 -12.73811 -12.64879 -12.40011 -12.19278 -12.00671 -11.83616 -11.48140 -11.34505 -11.25213 -10.78777 -10.22558 -9.88047 -9.31375 -8.28202 -6.44964 1.42974 1.46132 1.57037 1.82990 2.27859 2.38916 3.06623 3.21576 3.79761 3.83245 3.88709 4.11455 4.30750 4.34051 4.49123 4.63245 4.70449 4.81568 4.84569 4.90900 4.96762 5.04433 5.10382 5.12957 5.20485 5.25715 5.28142 5.42735 5.43144 5.49134 5.57341 5.75233 5.85161 5.88771 6.17835 6.66994 7.23333 7.26287 7.78352 8.84278 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036045 B = 0.005478 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.614071 B = 5110.501936 C = 5690.262596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.087 0.913 4 C -0.124 4.124 5 C 0.104 3.896 6 N -0.627 5.627 7 C 0.688 3.312 8 O -0.633 6.633 9 N -0.728 5.728 10 C 0.288 3.712 11 C -0.555 4.555 12 H 0.081 0.919 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.987 3.013 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.255 1.255 19 C 0.156 3.844 20 H 0.085 0.915 21 C -0.125 4.125 22 C -0.119 4.119 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.399 0.601 31 H -0.017 1.017 32 H -0.018 1.018 33 H 0.269 0.731 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.766 15.259 0.097 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.105 0.895 4 C -0.163 4.163 5 C -0.019 4.019 6 N -0.365 5.365 7 C 0.390 3.610 8 O -0.515 6.515 9 N -0.385 5.385 10 C 0.164 3.836 11 C -0.593 4.593 12 H 0.099 0.901 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.809 3.191 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.179 1.179 19 C 0.053 3.947 20 H 0.103 0.897 21 C -0.182 4.182 22 C -0.157 4.157 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.236 0.764 31 H 0.001 0.999 32 H 0.000 1.000 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.429 14.717 0.883 20.629 hybrid contribution 0.650 -0.711 -0.748 1.219 sum -13.778 14.006 0.136 19.648 Atomic orbital electron populations 1.21782 0.93897 1.01596 1.02629 1.21115 0.96476 0.99718 0.93287 0.89460 1.21973 0.93588 1.00955 0.99736 1.21878 0.95567 0.99790 0.84622 1.47430 1.44295 1.36228 1.08577 1.16392 0.80000 0.80614 0.84039 1.90900 1.67296 1.62235 1.31080 1.45605 1.51272 1.33528 1.08049 1.18355 0.86888 0.81721 0.96618 1.21579 1.30302 1.14555 0.92827 0.90078 1.26068 0.95500 0.95081 1.02854 1.70148 1.34223 1.18194 1.34414 0.85133 0.78970 0.77293 0.77660 1.19567 1.20869 1.17891 1.21262 0.94540 0.96922 0.81950 0.89671 1.21975 1.00518 0.99102 0.96586 1.22051 0.93058 1.00814 0.99803 0.91731 0.91483 0.93677 0.93347 0.88231 0.90705 0.89270 0.76351 0.99877 0.99967 0.92240 0.94371 0.94095 0.91667 0.93541 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 2 C -0.09 -1.40 2.68 -10.77 -0.03 -1.43 16 3 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.12 -2.30 5.36 30.67 0.16 -2.14 16 5 C 0.10 2.40 6.35 86.36 0.55 2.95 16 6 N -0.63 -20.10 2.97 -812.90 -2.42 -22.52 16 7 C 0.69 30.44 8.21 179.06 1.47 31.91 16 8 O -0.63 -33.13 11.75 -3.98 -0.05 -33.17 16 9 N -0.73 -33.40 5.41 -482.30 -2.61 -36.01 16 10 C 0.29 16.54 5.43 85.63 0.47 17.00 16 11 C -0.55 -31.05 9.28 25.60 0.24 -30.82 16 12 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 13 C 0.00 0.25 5.46 84.65 0.46 0.72 16 14 N -0.93 -57.24 13.29 21.44 0.28 -56.96 16 15 Si 0.99 42.88 29.54 68.60 2.03 44.91 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 19 C 0.16 4.21 3.49 44.97 0.16 4.37 16 20 H 0.09 1.94 8.14 -2.38 -0.02 1.93 16 21 C -0.12 -4.11 7.59 71.98 0.55 -3.56 16 22 C -0.12 -2.45 4.65 30.67 0.14 -2.31 16 23 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.07 1.83 5.74 -2.39 -0.01 1.82 16 29 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.40 15.50 5.91 -92.71 -0.55 14.95 16 31 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 32 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 33 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.04 1.51 6.79 -2.38 -0.02 1.49 16 35 H 0.04 1.60 6.70 -2.38 -0.02 1.59 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -72.73 298.86 2.55 -70.18 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.48 Total: 18.09 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 4.83 Total: 15.49 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -4.74 Total: -115.49 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.05 Total: -33.17 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -72.73 2.55 -70.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335132241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.604 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds