Wall clock time and date at job start Sun Mar 29 2020 22:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53002 * 109.47233 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46817 * 60.00194 * 5 4 2 7 7 C 1.53005 * 109.47452 * 300.00239 * 6 5 4 8 8 H 1.09000 * 109.47360 * 180.02562 * 7 6 5 9 9 N 1.46506 * 109.46632 * 299.99871 * 7 6 5 10 10 C 1.34771 * 120.00011 * 274.99522 * 9 7 6 11 11 O 1.21582 * 120.00494 * 0.02562 * 10 9 7 12 12 N 1.34784 * 119.99783 * 180.02562 * 10 9 7 13 13 C 1.46501 * 119.99679 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.46942 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37865 * 120.00077 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00225 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00239 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47480 * 89.99660 * 18 16 14 20 20 H 1.48502 * 109.47438 * 210.00378 * 18 16 14 21 21 H 1.48508 * 109.47017 * 330.00042 * 18 16 14 22 22 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.08992 * 109.47399 * 300.00166 * 4 2 1 27 27 H 1.09004 * 109.46724 * 60.00652 * 4 2 1 28 28 H 1.08993 * 109.47662 * 180.02562 * 5 4 2 29 29 H 1.09002 * 109.47075 * 300.00932 * 5 4 2 30 30 H 1.09002 * 109.47153 * 60.00231 * 6 5 4 31 31 H 1.09001 * 109.47289 * 180.02562 * 6 5 4 32 32 H 0.97008 * 119.99717 * 95.00170 * 9 7 6 33 33 H 0.96995 * 119.99688 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.47064 * 299.99384 * 13 12 10 35 35 H 1.09000 * 109.47589 * 60.00128 * 13 12 10 36 36 H 0.96998 * 120.00068 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.47853 * 300.00202 * 22 2 1 38 38 H 1.09002 * 109.47153 * 60.00231 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7208 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7204 1.2490 8 1 3.9345 -1.2337 2.1390 9 7 4.0584 0.6610 1.2487 10 6 5.2803 0.9442 1.7418 11 8 5.9779 0.0533 2.1864 12 7 5.7289 2.2152 1.7419 13 6 7.0574 2.5230 2.2774 14 6 7.3154 4.0032 2.1607 15 1 6.5647 4.6500 1.7311 16 6 8.5093 4.5318 2.6034 17 7 8.7343 5.8236 2.5021 18 14 9.8074 3.4132 3.3471 19 1 10.7090 2.9201 2.2751 20 1 10.5985 4.1711 4.3496 21 1 9.1466 2.2590 4.0079 22 6 2.0399 -0.7212 1.2493 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6768 -1.7489 -1.2492 27 1 1.6768 -0.2074 -2.1392 28 1 3.9335 -1.2342 -2.1396 29 1 3.9330 0.3070 -1.2496 30 1 3.7176 -2.4694 0.0000 31 1 5.1705 -1.4409 -0.0002 32 1 3.5019 1.3719 0.8936 33 1 5.1725 2.9259 1.3868 34 1 7.1041 2.2272 3.3254 35 1 7.8126 1.9773 1.7117 36 1 9.5744 6.1954 2.8132 37 1 1.6766 -0.2075 2.1393 38 1 1.6766 -1.7489 1.2493 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335196836.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:34 Heat of formation + Delta-G solvation = -60.665322 kcal Electronic energy + Delta-G solvation = -17583.853974 eV Core-core repulsion = 14846.002070 eV Total energy + Delta-G solvation = -2737.851904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.01930 -38.18336 -34.33467 -33.70441 -32.41268 -32.01946 -29.82548 -27.43463 -26.53157 -22.79305 -22.16791 -21.33390 -20.53966 -19.05975 -18.17210 -16.35987 -15.86858 -15.56716 -14.88530 -14.48208 -14.44143 -14.12479 -13.77398 -13.43126 -13.06558 -12.67536 -12.41710 -12.27227 -12.13219 -12.06881 -11.89711 -11.61151 -11.06951 -10.94595 -10.73523 -10.61462 -10.25794 -10.07828 -9.92957 -9.51551 -9.40559 -8.76722 -8.68976 -7.94845 -6.17690 -4.19248 3.29655 3.34041 3.40773 3.46474 3.88598 4.37465 4.56295 4.58857 4.63308 4.99086 5.04797 5.13116 5.18113 5.33472 5.35835 5.36657 5.49798 5.54767 5.62599 5.68227 5.79457 5.91900 5.95981 6.08603 6.14812 6.23600 6.32415 6.35891 6.80370 6.94266 7.16569 7.30711 7.47212 7.65548 8.33061 8.74686 8.87448 9.29187 9.45117 10.94373 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041725 B = 0.004896 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.905860 B = 5717.641764 C = 5956.282652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.131 4.131 7 C 0.166 3.834 8 H 0.085 0.915 9 N -0.747 5.747 10 C 0.694 3.306 11 O -0.605 6.605 12 N -0.725 5.725 13 C 0.239 3.761 14 C -0.541 4.541 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.260 1.260 22 C -0.121 4.121 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.390 0.610 33 H 0.391 0.609 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.267 0.733 37 H 0.068 0.932 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.835 -12.490 -6.286 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.170 4.170 7 C 0.060 3.940 8 H 0.103 0.897 9 N -0.405 5.405 10 C 0.394 3.606 11 O -0.485 6.485 12 N -0.377 5.377 13 C 0.116 3.884 14 C -0.579 4.579 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.532 5.532 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.184 1.184 22 C -0.159 4.159 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.224 0.776 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.010 -13.144 -5.808 20.780 hybrid contribution 0.264 0.301 0.001 0.401 sum -14.746 -12.843 -5.807 20.399 Atomic orbital electron populations 1.21828 0.95220 1.01686 1.01666 1.21138 0.95373 0.99726 0.95029 0.91238 1.21602 0.95816 1.00407 0.97188 1.21486 0.95068 1.01374 0.97659 1.21941 1.01685 0.98696 0.94682 1.20665 0.92556 0.82236 0.98530 0.89704 1.45261 1.17669 1.09293 1.68258 1.16152 0.81419 0.83959 0.79048 1.90847 1.57386 1.46267 1.53985 1.45395 1.20705 1.05837 1.65735 1.19334 0.78740 0.96420 0.93916 1.21106 1.03518 0.90514 1.42766 0.90349 1.24778 0.97945 0.95040 0.94868 1.69885 1.25279 1.11362 1.46664 0.86810 0.81858 0.81238 0.79742 1.19883 1.20969 1.18438 1.21899 0.94483 1.01478 0.98019 0.92771 0.92665 0.92759 0.92093 0.92215 0.92321 0.91727 0.91634 0.91214 0.77519 0.77599 0.95990 0.96457 0.92319 0.91339 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.19 37.16 0.34 -0.72 16 2 C -0.09 -0.80 2.55 -90.62 -0.23 -1.03 16 3 H 0.07 0.62 6.50 -51.93 -0.34 0.28 16 4 C -0.11 -0.97 5.20 -26.73 -0.14 -1.11 16 5 C -0.12 -1.24 5.77 -26.73 -0.15 -1.40 16 6 C -0.13 -1.58 5.60 -26.73 -0.15 -1.73 16 7 C 0.17 2.10 2.79 -67.90 -0.19 1.91 16 8 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 9 N -0.75 -10.89 4.24 -58.64 -0.25 -11.14 16 10 C 0.69 13.90 8.53 -86.92 -0.74 13.16 16 11 O -0.61 -14.49 16.00 5.29 0.08 -14.41 16 12 N -0.72 -15.25 5.55 -66.41 -0.37 -15.62 16 13 C 0.24 6.05 4.50 -5.19 -0.02 6.03 16 14 C -0.54 -15.10 9.83 -34.44 -0.34 -15.44 16 15 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 18 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 22 C -0.12 -1.13 4.89 -26.71 -0.13 -1.26 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.39 4.76 6.88 -40.82 -0.28 4.48 16 33 H 0.39 7.25 8.34 -40.82 -0.34 6.91 16 34 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 35 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -32.18 301.53 -8.06 -40.24 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.32 Total: 4.77 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.85 Total: 0.53 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.16 Total: -52.82 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.08 Total: -14.41 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.18 -8.06 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335196836.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.425 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds