Wall clock time and date at job start Sun Mar 29 2020 22:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 9 9 N 1.46505 * 109.46998 * 180.02562 * 7 6 5 10 10 C 1.34770 * 119.99926 * 274.99646 * 9 7 6 11 11 O 1.21592 * 120.00149 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00242 * 179.97438 * 10 9 7 13 13 C 1.46498 * 120.00240 * 179.97438 * 12 10 9 14 14 C 1.50708 * 109.47245 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99644 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99957 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00083 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99478 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47280 * 60.00259 * 18 16 14 20 20 H 1.48507 * 109.46821 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47587 * 299.99454 * 18 16 14 22 22 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 23 23 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 25 25 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 26 26 H 1.08998 * 109.46505 * 59.99871 * 4 2 1 27 27 H 1.08996 * 109.46884 * 300.00752 * 4 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 29 29 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 30 30 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 32 32 H 0.96996 * 119.99706 * 94.99842 * 9 7 6 33 33 H 0.97007 * 120.00109 * 0.02562 * 12 10 9 34 34 H 1.08993 * 109.47509 * 300.00677 * 13 12 10 35 35 H 1.09004 * 109.46730 * 60.00767 * 13 12 10 36 36 H 0.97003 * 120.00203 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47045 * 59.99942 * 22 2 1 38 38 H 1.09001 * 109.47375 * 299.99867 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0794 -1.4434 -0.0003 7 6 3.5695 -0.7221 -1.2495 8 1 3.9331 0.3054 -1.2497 9 7 4.0569 -1.4135 -2.4457 10 6 5.2788 -1.1287 -2.9377 11 8 5.9769 -0.2983 -2.3886 12 7 5.7274 -1.7650 -4.0378 13 6 7.0554 -1.4550 -4.5730 14 6 7.3130 -2.2966 -5.7964 15 1 6.5623 -2.9924 -6.1410 16 6 8.5070 -2.1782 -6.4757 17 7 9.4208 -1.3305 -6.0564 18 14 8.8264 -3.2218 -7.9917 19 1 7.7972 -2.9276 -9.0211 20 1 10.1725 -2.9075 -8.5343 21 1 8.7633 -4.6594 -7.6253 22 6 2.0400 -0.7213 -1.2492 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6766 -1.7488 1.2493 27 1 1.6765 -0.2074 2.1392 28 1 3.9333 -1.2360 2.1388 29 1 3.9336 0.3058 1.2488 30 1 5.1695 -1.4441 -0.0002 31 1 3.7158 -2.4709 0.0000 32 1 3.5000 -2.0762 -2.8834 33 1 5.1706 -2.4278 -4.4757 34 1 7.1015 -0.3998 -4.8420 35 1 7.8110 -1.6708 -3.8175 36 1 10.2607 -1.2470 -6.5345 37 1 1.6766 -0.2075 -2.1392 38 1 1.6767 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335196841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:38 Heat of formation + Delta-G solvation = -67.664694 kcal Electronic energy + Delta-G solvation = -17232.535674 eV Core-core repulsion = 14494.380255 eV Total energy + Delta-G solvation = -2738.155419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.70472 -38.17591 -34.37922 -33.80697 -32.39681 -32.03818 -29.41725 -26.84017 -26.46365 -22.99229 -22.16055 -21.23363 -20.13301 -19.70987 -17.93749 -16.19815 -15.76567 -15.17757 -14.74366 -14.59737 -14.46306 -14.20918 -13.63688 -13.47485 -13.05585 -12.69327 -12.49876 -11.96199 -11.91387 -11.90083 -11.53494 -11.22247 -11.00435 -10.94887 -10.84544 -10.66345 -10.39294 -10.26523 -10.21782 -9.34828 -9.30028 -8.70611 -8.59872 -7.70104 -6.11990 -4.18487 3.27938 3.31698 3.33506 3.44988 4.02141 4.35481 4.56088 4.66375 4.72369 5.04810 5.10243 5.17247 5.23876 5.35940 5.40218 5.42839 5.48764 5.57956 5.61337 5.69329 5.82518 5.92834 6.05337 6.09278 6.14879 6.22144 6.37069 6.45046 7.01416 7.19639 7.57155 7.60836 7.61900 7.96731 8.10014 8.80858 9.01504 9.39374 9.53880 10.98288 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.056536 B = 0.004038 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.143973 B = 6931.667207 C = 7169.081810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.130 4.130 7 C 0.167 3.833 8 H 0.084 0.916 9 N -0.754 5.754 10 C 0.693 3.307 11 O -0.602 6.602 12 N -0.731 5.731 13 C 0.267 3.733 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.120 4.120 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.389 0.611 33 H 0.385 0.615 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.067 0.933 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.221 -0.601 11.591 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.061 3.939 8 H 0.102 0.898 9 N -0.410 5.410 10 C 0.392 3.608 11 O -0.481 6.481 12 N -0.383 5.383 13 C 0.146 3.854 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.158 4.158 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.222 0.778 33 H 0.217 0.783 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.312 0.257 12.015 20.261 hybrid contribution -0.217 -1.205 -1.275 1.767 sum -16.529 -0.947 10.740 19.735 Atomic orbital electron populations 1.21821 0.95172 1.01729 1.01617 1.21081 0.95332 0.99898 0.94510 0.90907 1.21625 0.95786 1.00523 0.97241 1.21496 0.95174 1.01136 0.97707 1.21961 1.01750 0.99140 0.94096 1.20646 0.92423 0.97180 0.83675 0.89774 1.45256 1.17936 1.46425 1.31405 1.16178 0.81244 0.81989 0.81357 1.90861 1.57195 1.37575 1.62447 1.45720 1.21400 1.43243 1.27941 1.18955 0.76790 0.96564 0.93085 1.21204 1.02133 1.23433 1.11275 0.92033 1.24943 0.95709 0.95519 0.97858 1.69969 1.07145 1.35182 1.40044 0.86474 0.77478 0.80441 0.82479 1.20107 1.21090 1.20107 1.21857 0.94649 1.01127 0.98203 0.92749 0.92734 0.92674 0.92038 0.92118 0.91976 0.91751 0.91163 0.92224 0.77795 0.78257 0.95816 0.95808 0.92431 0.91410 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.09 -0.79 2.72 -90.62 -0.25 -1.04 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -0.99 5.20 -26.73 -0.14 -1.13 16 5 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 6 C -0.13 -1.68 5.49 -26.73 -0.15 -1.83 16 7 C 0.17 2.26 2.45 -67.96 -0.17 2.10 16 8 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 9 N -0.75 -11.67 5.08 -58.70 -0.30 -11.97 16 10 C 0.69 14.72 8.53 -86.93 -0.74 13.98 16 11 O -0.60 -15.40 16.01 5.29 0.08 -15.32 16 12 N -0.73 -16.10 5.55 -66.41 -0.37 -16.47 16 13 C 0.27 7.33 5.43 -5.19 -0.03 7.30 16 14 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 18 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.12 -1.21 4.67 -26.76 -0.12 -1.34 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.39 4.85 8.62 -40.82 -0.35 4.50 16 33 H 0.39 7.25 8.34 -40.82 -0.34 6.91 16 34 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 309.56 15.07 4.66 4.66 Total: -1.00 -32.50 309.56 -8.57 -41.07 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.54 Total: 5.45 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.83 Total: 2.29 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.07 Total: -54.23 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.08 Total: -15.32 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.50 -8.57 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335196841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.599 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds