Wall clock time and date at job start Sun Mar 29 2020 22:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 9 9 N 1.46505 * 109.46998 * 180.02562 * 7 6 5 10 10 C 1.34770 * 119.99926 * 274.99646 * 9 7 6 11 11 O 1.21592 * 120.00149 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00242 * 179.97438 * 10 9 7 13 13 C 1.46498 * 120.00240 * 179.97438 * 12 10 9 14 14 C 1.50708 * 109.47245 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99644 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99957 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00083 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99478 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47280 * 60.00259 * 18 16 14 20 20 H 1.48507 * 109.46821 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47587 * 299.99454 * 18 16 14 22 22 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 23 23 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 25 25 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 26 26 H 1.08998 * 109.46505 * 59.99871 * 4 2 1 27 27 H 1.08996 * 109.46884 * 300.00752 * 4 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 29 29 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 30 30 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 32 32 H 0.96996 * 119.99706 * 94.99842 * 9 7 6 33 33 H 0.97007 * 120.00109 * 0.02562 * 12 10 9 34 34 H 1.08993 * 109.47509 * 300.00677 * 13 12 10 35 35 H 1.09004 * 109.46730 * 60.00767 * 13 12 10 36 36 H 0.97003 * 120.00203 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47045 * 59.99942 * 22 2 1 38 38 H 1.09001 * 109.47375 * 299.99867 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0794 -1.4434 -0.0003 7 6 3.5695 -0.7221 -1.2495 8 1 3.9331 0.3054 -1.2497 9 7 4.0569 -1.4135 -2.4457 10 6 5.2788 -1.1287 -2.9377 11 8 5.9769 -0.2983 -2.3886 12 7 5.7274 -1.7650 -4.0378 13 6 7.0554 -1.4550 -4.5730 14 6 7.3130 -2.2966 -5.7964 15 1 6.5623 -2.9924 -6.1410 16 6 8.5070 -2.1782 -6.4757 17 7 9.4208 -1.3305 -6.0564 18 14 8.8264 -3.2218 -7.9917 19 1 7.7972 -2.9276 -9.0211 20 1 10.1725 -2.9075 -8.5343 21 1 8.7633 -4.6594 -7.6253 22 6 2.0400 -0.7213 -1.2492 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6766 -1.7488 1.2493 27 1 1.6765 -0.2074 2.1392 28 1 3.9333 -1.2360 2.1388 29 1 3.9336 0.3058 1.2488 30 1 5.1695 -1.4441 -0.0002 31 1 3.7158 -2.4709 0.0000 32 1 3.5000 -2.0762 -2.8834 33 1 5.1706 -2.4278 -4.4757 34 1 7.1015 -0.3998 -4.8420 35 1 7.8110 -1.6708 -3.8175 36 1 10.2607 -1.2470 -6.5345 37 1 1.6766 -0.2075 -2.1392 38 1 1.6767 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335196841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:37 Heat of formation + Delta-G solvation = -90.540477 kcal Electronic energy + Delta-G solvation = -17233.527642 eV Core-core repulsion = 14494.380255 eV Total energy + Delta-G solvation = -2739.147388 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.15393 -39.41468 -36.18621 -35.36557 -34.32216 -33.04838 -30.69213 -28.77997 -27.22006 -24.86743 -23.24239 -22.48173 -21.54887 -20.81254 -19.63373 -18.04167 -17.43381 -16.55729 -16.39578 -16.04368 -15.51986 -15.23379 -15.14248 -14.80382 -14.38299 -14.01370 -13.94042 -13.61622 -13.22270 -12.91025 -12.73207 -12.68115 -12.40657 -12.23881 -12.17078 -11.83686 -11.54069 -11.49745 -11.32773 -11.13233 -11.03593 -10.78896 -10.19180 -9.56984 -8.27955 -6.44891 1.43473 1.48362 1.56341 1.90925 2.26349 2.40265 3.06757 3.52528 3.71740 3.81978 4.01545 4.17067 4.23802 4.43817 4.51227 4.55662 4.67938 4.80181 4.88994 5.01420 5.03610 5.06162 5.16118 5.17377 5.26629 5.28657 5.36165 5.41593 5.44808 5.49502 5.59402 5.65711 5.72203 5.85515 6.30204 6.66895 7.24701 7.34676 7.75264 8.84375 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.056536 B = 0.004038 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.143973 B = 6931.667207 C = 7169.081810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.127 4.127 7 C 0.162 3.838 8 H 0.052 0.948 9 N -0.729 5.729 10 C 0.690 3.310 11 O -0.650 6.650 12 N -0.724 5.724 13 C 0.286 3.714 14 C -0.556 4.556 15 H 0.084 0.916 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.988 3.012 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.262 1.262 22 C -0.110 4.110 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.409 0.591 33 H 0.404 0.596 34 H -0.016 1.016 35 H -0.016 1.016 36 H 0.269 0.731 37 H 0.069 0.931 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.817 -2.452 11.205 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.166 4.166 7 C 0.057 3.943 8 H 0.071 0.929 9 N -0.386 5.386 10 C 0.390 3.610 11 O -0.533 6.533 12 N -0.378 5.378 13 C 0.162 3.838 14 C -0.594 4.594 15 H 0.102 0.898 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.811 3.189 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.148 4.148 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.246 0.754 33 H 0.240 0.760 34 H 0.002 0.998 35 H 0.001 0.999 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.003 -1.631 11.647 22.348 hybrid contribution 0.576 -0.576 -1.068 1.344 sum -18.427 -2.207 10.579 21.362 Atomic orbital electron populations 1.21775 0.93419 1.02505 1.02159 1.21093 0.96665 0.99186 0.93884 0.91929 1.21601 0.93756 1.01460 0.97737 1.21489 0.96974 1.00151 0.96659 1.21905 0.99234 1.00377 0.95041 1.20864 0.95119 0.95341 0.82989 0.92921 1.45065 1.15807 1.46187 1.31499 1.16373 0.82492 0.81304 0.80877 1.90828 1.59099 1.39681 1.63708 1.45307 1.20020 1.44003 1.28466 1.18390 0.78414 0.94463 0.92502 1.21581 1.03009 1.23704 1.11129 0.89783 1.26093 0.95229 0.96731 1.01596 1.70141 1.07837 1.37121 1.41919 0.85167 0.77423 0.78669 0.77687 1.18602 1.21061 1.18614 1.21814 0.91102 1.02679 0.99184 0.91816 0.91839 0.92605 0.90791 0.90571 0.90916 0.92949 0.95215 0.90587 0.75434 0.76035 0.99822 0.99853 0.92217 0.91185 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.19 71.98 0.66 -0.97 16 2 C -0.09 -1.37 2.72 -10.79 -0.03 -1.40 16 3 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.11 -1.58 5.20 30.60 0.16 -1.42 16 5 C -0.11 -2.29 5.92 30.59 0.18 -2.10 16 6 C -0.13 -3.25 5.49 30.59 0.17 -3.08 16 7 C 0.16 4.37 2.45 44.97 0.11 4.48 16 8 H 0.05 1.77 7.58 -2.39 -0.02 1.76 16 9 N -0.73 -22.26 5.08 -457.91 -2.33 -24.58 16 10 C 0.69 30.19 8.53 179.06 1.53 31.72 16 11 O -0.65 -35.24 16.01 -4.00 -0.06 -35.31 16 12 N -0.72 -32.49 5.55 -482.30 -2.68 -35.17 16 13 C 0.29 16.37 5.43 85.64 0.46 16.83 16 14 C -0.56 -30.99 9.28 25.60 0.24 -30.75 16 15 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 16 C 0.00 0.17 5.46 84.66 0.46 0.63 16 17 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 18 Si 0.99 42.79 29.54 68.60 2.03 44.81 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 22 C -0.11 -1.97 4.67 30.58 0.14 -1.82 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.41 9.36 8.62 -92.71 -0.80 8.56 16 33 H 0.40 14.87 8.34 -92.70 -0.77 14.10 16 34 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -74.03 309.56 0.79 -73.24 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.53 Total: 21.89 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 4.09 Total: 12.12 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -4.72 Total: -116.75 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.06 Total: -35.31 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.03 0.79 -73.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335196841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.303 kcal (2) G-P(sol) polarization free energy of solvation -74.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds