Wall clock time and date at job start Sun Mar 29 2020 22:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.49827 * 2 1 4 4 C 1.53039 * 109.49817 * 239.93518 * 2 1 3 5 5 C 1.53039 * 109.53971 * 178.68597 * 4 2 1 6 6 C 1.53188 * 109.31113 * 61.36711 * 5 4 2 7 7 N 1.46933 * 108.77581 * 305.36419 * 6 5 4 8 8 C 1.34775 * 120.62905 * 233.58794 * 7 6 5 9 9 O 1.21589 * 119.99898 * 174.76856 * 8 7 6 10 10 N 1.34771 * 120.00369 * 354.76708 * 8 7 6 11 11 C 1.46503 * 120.00200 * 184.97957 * 10 8 7 12 12 C 1.50702 * 109.46888 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00278 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99782 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99868 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99628 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.46909 * 90.00439 * 16 14 12 18 18 H 1.48500 * 109.46763 * 209.99665 * 16 14 12 19 19 H 1.48489 * 109.47506 * 329.99975 * 16 14 12 20 20 C 1.46924 * 118.73822 * 53.61090 * 7 6 5 21 21 H 1.08994 * 109.58685 * 186.60265 * 20 7 6 22 22 C 1.53007 * 109.58762 * 66.17662 * 20 7 6 23 23 H 1.08996 * 109.47456 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47363 * 300.06503 * 1 2 3 25 25 H 1.09001 * 109.46943 * 60.06139 * 1 2 3 26 26 H 1.09001 * 109.46190 * 298.70971 * 4 2 1 27 27 H 1.09005 * 109.45913 * 58.66332 * 4 2 1 28 28 H 1.08999 * 109.49612 * 181.31288 * 5 4 2 29 29 H 1.08997 * 109.49613 * 301.38505 * 5 4 2 30 30 H 1.08998 * 109.58955 * 65.14968 * 6 5 4 31 31 H 1.08998 * 109.58892 * 185.58193 * 6 5 4 32 32 H 0.97008 * 120.00063 * 4.99040 * 10 8 7 33 33 H 1.08996 * 109.47229 * 300.00266 * 11 10 8 34 34 H 1.09004 * 109.46636 * 60.00601 * 11 10 8 35 35 H 0.97002 * 119.99608 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.47182 * 300.71258 * 22 20 7 37 37 H 1.09002 * 109.46464 * 60.71288 * 22 20 7 38 38 H 1.08997 * 109.46707 * 180.70935 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 3.5708 -0.6947 -1.2662 6 6 4.1052 -1.4268 -0.0312 7 7 3.5045 -0.8296 1.1694 8 6 4.2810 -0.3872 2.1782 9 8 3.7794 0.1905 3.1232 10 7 5.6136 -0.5853 2.1397 11 6 6.4444 -0.2029 3.2842 12 6 7.8863 -0.5265 2.9885 13 1 8.1568 -0.9720 2.0426 14 6 8.8602 -0.2537 3.9257 15 7 10.1185 -0.5356 3.6675 16 14 8.3921 0.5162 5.5620 17 1 8.0954 -0.5554 6.5464 18 1 9.5188 1.3464 6.0587 19 1 7.1903 1.3695 5.3819 20 6 2.0412 -0.7242 1.2494 21 1 1.7637 -0.1587 2.1389 22 6 1.4290 -2.1249 1.3169 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5148 0.8894 25 1 -0.3633 0.5129 -0.8905 26 1 1.6966 -1.7569 -1.2359 27 1 1.6582 -0.2238 -2.1390 28 1 3.9334 -1.1892 -2.1674 29 1 3.9159 0.3391 -1.2545 30 1 3.8374 -2.4819 -0.0875 31 1 5.1895 -1.3248 0.0135 32 1 6.0226 -0.9810 1.3541 33 1 6.3423 0.8670 3.4659 34 1 6.1217 -0.7539 4.1676 35 1 10.8035 -0.3441 4.3270 36 1 1.7140 -2.6891 0.4289 37 1 1.7940 -2.6383 2.2064 38 1 0.3430 -2.0448 1.3635 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335436982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:38 Heat of formation + Delta-G solvation = -40.026055 kcal Electronic energy + Delta-G solvation = -17950.532001 eV Core-core repulsion = 15213.575083 eV Total energy + Delta-G solvation = -2736.956918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24635 -37.82499 -34.40797 -33.68331 -32.37529 -32.13494 -28.99261 -27.46583 -26.39608 -23.91812 -22.24286 -21.97423 -19.93857 -18.64079 -17.89469 -16.44629 -15.95387 -15.44242 -14.87660 -14.53634 -14.35286 -13.95346 -13.61988 -13.25084 -13.03765 -12.85619 -12.66531 -12.27847 -12.21617 -12.00889 -11.65699 -11.59508 -11.04211 -10.91939 -10.77372 -10.67338 -10.64306 -10.20265 -9.92892 -9.45636 -9.40051 -8.74445 -8.44117 -7.89236 -6.18192 -4.19709 3.13779 3.30194 3.37066 3.46459 3.80890 4.36974 4.48178 4.73563 4.75800 4.79282 4.97504 5.17547 5.18765 5.30803 5.34078 5.46175 5.47422 5.61897 5.65138 5.71100 5.80753 5.86668 5.94713 5.97474 6.04331 6.14015 6.23182 6.43946 6.72968 6.93019 7.16120 7.30807 7.45456 7.58087 8.29759 8.71398 8.83567 9.25337 9.44152 10.93848 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042309 B = 0.005574 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.633082 B = 5021.907028 C = 5395.760285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.111 3.889 7 N -0.632 5.632 8 C 0.699 3.301 9 O -0.603 6.603 10 N -0.724 5.724 11 C 0.237 3.763 12 C -0.541 4.541 13 H 0.078 0.922 14 C 0.078 3.922 15 N -0.894 5.894 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.160 3.840 21 H 0.098 0.902 22 C -0.163 4.163 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.391 0.609 33 H 0.023 0.977 34 H 0.017 0.983 35 H 0.267 0.733 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.003 -2.231 -10.485 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.173 4.173 6 C -0.013 4.013 7 N -0.370 5.370 8 C 0.401 3.599 9 O -0.483 6.483 10 N -0.378 5.378 11 C 0.115 3.885 12 C -0.579 4.579 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.531 5.531 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.184 1.184 20 C 0.055 3.945 21 H 0.116 0.884 22 C -0.221 4.221 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.227 0.773 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.110 -1.804 -9.662 19.732 hybrid contribution 0.246 0.141 0.399 0.489 sum -16.863 -1.664 -9.263 19.312 Atomic orbital electron populations 1.21868 0.94735 1.02016 1.01770 1.21507 0.95607 1.00035 0.95020 0.90879 1.21590 0.95300 1.00813 0.97362 1.21919 0.96101 1.01616 0.97705 1.21564 0.98179 0.96898 0.84657 1.47330 1.05775 1.65694 1.18187 1.16029 0.82087 0.79513 0.82304 1.90838 1.73768 1.48174 1.35510 1.45570 1.04515 1.66122 1.21583 1.19356 0.89584 0.95595 0.84008 1.21091 0.89024 1.43188 1.04597 0.90390 1.24774 0.94632 0.94692 0.98480 1.69883 1.00205 1.47356 1.35694 0.86814 0.78797 0.80202 0.83879 1.19872 1.20944 1.18419 1.20916 0.78648 0.96212 0.98692 0.88372 1.22222 1.00679 0.97069 1.02177 0.92177 0.92454 0.92705 0.91617 0.92038 0.90913 0.91436 0.91741 0.90071 0.77299 0.95892 0.96502 0.92308 0.92340 0.92415 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.71 37.16 0.32 -0.93 16 2 C -0.10 -1.11 2.65 -90.50 -0.24 -1.35 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -1.05 4.96 -26.69 -0.13 -1.18 16 5 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 6 C 0.11 1.38 5.97 -3.71 -0.02 1.35 16 7 N -0.63 -9.96 2.68 -170.90 -0.46 -10.42 16 8 C 0.70 14.62 8.29 -86.93 -0.72 13.90 16 9 O -0.60 -14.84 15.77 5.29 0.08 -14.76 16 10 N -0.72 -15.68 5.46 -66.41 -0.36 -16.04 16 11 C 0.24 6.08 4.50 -5.19 -0.02 6.06 16 12 C -0.54 -15.15 9.83 -34.44 -0.34 -15.49 16 13 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 14 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 15 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 16 Si 0.88 21.84 27.47 -169.99 -4.67 17.18 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 20 C 0.16 2.15 2.81 -67.59 -0.19 1.96 16 21 H 0.10 1.57 6.99 -51.93 -0.36 1.21 16 22 C -0.16 -1.82 8.53 37.16 0.32 -1.50 16 23 H 0.06 0.46 6.35 -51.93 -0.33 0.13 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.57 6.51 -51.93 -0.34 0.23 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.71 7.48 -51.93 -0.39 0.32 16 31 H 0.08 1.05 5.65 -51.93 -0.29 0.75 16 32 H 0.39 7.54 5.81 -40.82 -0.24 7.30 16 33 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 34 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.06 0.58 5.72 -51.93 -0.30 0.29 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.61 6.36 -51.93 -0.33 0.28 16 LS Contribution 292.67 15.07 4.41 4.41 Total: -1.00 -32.47 292.67 -7.39 -39.86 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.88 Total: 2.40 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -1.29 Total: 3.41 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.05 Total: -52.51 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.08 Total: -14.76 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.47 -7.39 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335436982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.163 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds