Wall clock time and date at job start Sun Mar 29 2020 22:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.49589 * 2 1 4 4 C 1.53039 * 109.52610 * 120.07965 * 2 1 3 5 5 C 1.53040 * 109.53813 * 181.33160 * 4 2 1 6 6 C 1.53182 * 109.31608 * 298.63653 * 5 4 2 7 7 N 1.47207 * 108.85468 * 54.65257 * 6 5 4 8 8 C 1.34773 * 120.81423 * 126.33796 * 7 6 5 9 9 O 1.21591 * 120.00056 * 175.11846 * 8 7 6 10 10 N 1.34780 * 120.00387 * 355.11554 * 8 7 6 11 11 C 1.46499 * 120.00199 * 185.07483 * 10 8 7 12 12 C 1.50702 * 109.47057 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99709 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99902 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99782 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00150 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47374 * 90.00178 * 16 14 12 18 18 H 1.48509 * 109.47130 * 209.99963 * 16 14 12 19 19 H 1.48499 * 109.47045 * 329.99692 * 16 14 12 20 20 C 1.46926 * 118.55268 * 306.47641 * 7 6 5 21 21 H 1.09008 * 109.58468 * 173.39719 * 20 7 6 22 22 C 1.52996 * 109.58652 * 293.67772 * 20 7 6 23 23 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47129 * 300.06407 * 1 2 3 25 25 H 1.09004 * 109.47126 * 60.06925 * 1 2 3 26 26 H 1.08993 * 109.46077 * 301.35451 * 4 2 1 27 27 H 1.09000 * 109.45699 * 61.31559 * 4 2 1 28 28 H 1.09005 * 109.49563 * 58.59531 * 5 4 2 29 29 H 1.09004 * 109.49726 * 178.65385 * 5 4 2 30 30 H 1.09007 * 109.58797 * 174.42239 * 6 5 4 31 31 H 1.09004 * 109.59266 * 294.70458 * 6 5 4 32 32 H 0.97002 * 119.99719 * 5.06973 * 10 8 7 33 33 H 1.08998 * 109.46924 * 299.99770 * 11 10 8 34 34 H 1.09007 * 109.47188 * 59.99890 * 11 10 8 35 35 H 0.97002 * 119.99556 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.46743 * 179.71503 * 22 20 7 37 37 H 1.08992 * 109.47828 * 299.71835 * 22 20 7 38 38 H 1.09003 * 109.46915 * 59.72056 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0415 -0.7229 1.2481 5 6 3.5715 -0.6941 1.2653 6 6 4.1060 -1.4254 0.0300 7 7 3.5049 -0.8279 -1.1737 8 6 4.2786 -0.3832 -2.1836 9 8 3.7659 0.0259 -3.2075 10 7 5.6205 -0.3919 -2.0588 11 6 6.4577 0.1932 -3.1091 12 6 7.9095 0.0562 -2.7288 13 1 8.1813 -0.4195 -1.7981 14 6 8.8907 0.5372 -3.5696 15 7 10.1577 0.4172 -3.2379 16 14 8.4205 1.3593 -5.1796 17 1 8.2436 2.8170 -4.9580 18 1 9.4947 1.1376 -6.1808 19 1 7.1495 0.7768 -5.6801 20 6 2.0413 -0.7234 -1.2498 21 1 1.7611 -0.1588 -2.1392 22 6 1.4300 -2.1243 -1.3178 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5148 0.8894 25 1 -0.3633 0.5128 -0.8906 26 1 1.6589 -0.2246 2.1388 27 1 1.6979 -1.7573 1.2350 28 1 3.9161 0.3399 1.2535 29 1 3.9346 -1.1883 2.1665 30 1 5.1903 -1.3228 -0.0148 31 1 3.8410 -2.4812 0.0870 32 1 6.0320 -0.7854 -1.2735 33 1 6.2774 -0.3274 -4.0496 34 1 6.2108 1.2486 -3.2248 35 1 10.8480 0.7560 -3.8293 36 1 0.3441 -2.0446 -1.3692 37 1 1.7988 -2.6391 -2.2049 38 1 1.7113 -2.6871 -0.4278 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335436983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:39 Heat of formation + Delta-G solvation = -39.977139 kcal Electronic energy + Delta-G solvation = -17958.507988 eV Core-core repulsion = 15221.553191 eV Total energy + Delta-G solvation = -2736.954797 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23066 -37.82325 -34.40873 -33.67059 -32.37089 -32.12732 -28.99396 -27.45762 -26.39888 -23.92110 -22.23783 -21.97831 -19.93853 -18.63036 -17.89798 -16.44456 -15.94942 -15.39839 -14.89667 -14.50464 -14.38194 -14.00511 -13.59132 -13.23332 -13.06377 -12.85201 -12.66031 -12.25738 -12.20082 -12.00726 -11.65966 -11.58346 -11.05091 -10.91722 -10.76907 -10.67707 -10.63920 -10.20137 -9.92866 -9.45623 -9.40263 -8.74376 -8.44268 -7.89142 -6.18193 -4.19726 3.13208 3.30169 3.37025 3.46426 3.81319 4.36959 4.48156 4.73568 4.76905 4.78059 4.97732 5.17597 5.18709 5.30791 5.34154 5.46267 5.48043 5.61853 5.65609 5.70840 5.80798 5.87341 5.94967 5.97886 6.04814 6.14671 6.23289 6.43898 6.72769 6.92679 7.16122 7.30873 7.45472 7.58111 8.29753 8.71402 8.83551 9.25394 9.44168 10.93841 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040866 B = 0.005624 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.009021 B = 4977.423568 C = 5338.615453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.111 3.889 7 N -0.632 5.632 8 C 0.700 3.300 9 O -0.603 6.603 10 N -0.724 5.724 11 C 0.237 3.763 12 C -0.541 4.541 13 H 0.078 0.922 14 C 0.078 3.922 15 N -0.894 5.894 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.160 3.840 21 H 0.097 0.903 22 C -0.163 4.163 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.391 0.609 33 H 0.023 0.977 34 H 0.017 0.983 35 H 0.267 0.733 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.056 -3.830 9.789 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.013 4.013 7 N -0.370 5.370 8 C 0.401 3.599 9 O -0.483 6.483 10 N -0.378 5.378 11 C 0.115 3.885 12 C -0.579 4.579 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.531 5.531 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.184 1.184 20 C 0.056 3.944 21 H 0.115 0.885 22 C -0.221 4.221 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.227 0.773 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.167 -3.464 8.935 19.660 hybrid contribution 0.249 0.250 -0.350 0.497 sum -16.917 -3.214 8.586 19.241 Atomic orbital electron populations 1.21863 0.94704 1.02022 1.01778 1.21511 0.95622 1.00035 0.95031 0.90883 1.21586 0.95314 1.00792 0.97354 1.21917 0.96068 1.01704 0.97668 1.21604 0.98208 0.96824 0.84641 1.47390 1.05781 1.65745 1.18096 1.16024 0.82157 0.78786 0.82932 1.90840 1.73511 1.55208 1.28714 1.45564 1.03472 1.63144 1.25624 1.19356 0.89493 0.93104 0.86591 1.21090 0.88115 1.40697 1.07977 0.90392 1.24774 0.94643 0.95090 0.98081 1.69888 0.99487 1.46022 1.37750 0.86814 0.78970 0.80439 0.83470 1.19878 1.20941 1.18411 1.20905 0.78690 0.96291 0.98556 0.88471 1.22212 1.00655 0.97096 1.02133 0.92177 0.92672 0.92466 0.92022 0.91630 0.91348 0.90906 0.90085 0.91748 0.77301 0.95873 0.96526 0.92312 0.91545 0.92396 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.71 37.16 0.32 -0.93 16 2 C -0.10 -1.11 2.65 -90.50 -0.24 -1.35 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -1.05 4.96 -26.69 -0.13 -1.18 16 5 C -0.14 -1.39 6.08 -26.62 -0.16 -1.55 16 6 C 0.11 1.38 6.02 -3.56 -0.02 1.35 16 7 N -0.63 -9.97 2.69 -170.68 -0.46 -10.43 16 8 C 0.70 14.63 8.30 -86.92 -0.72 13.91 16 9 O -0.60 -14.84 15.78 5.29 0.08 -14.76 16 10 N -0.72 -15.69 5.46 -66.41 -0.36 -16.05 16 11 C 0.24 6.08 4.50 -5.19 -0.02 6.06 16 12 C -0.54 -15.15 9.83 -34.44 -0.34 -15.48 16 13 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 14 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 15 N -0.89 -26.82 13.96 55.43 0.77 -26.04 16 16 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 20 C 0.16 2.16 2.77 -67.60 -0.19 1.97 16 21 H 0.10 1.55 7.03 -51.92 -0.37 1.19 16 22 C -0.16 -1.81 8.52 37.16 0.32 -1.50 16 23 H 0.06 0.46 6.36 -51.93 -0.33 0.13 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.56 6.50 -51.93 -0.34 0.23 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.04 5.59 -51.92 -0.29 0.75 16 31 H 0.06 0.71 7.50 -51.93 -0.39 0.32 16 32 H 0.39 7.54 5.80 -40.82 -0.24 7.30 16 33 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 34 H 0.02 0.45 7.57 -51.92 -0.39 0.05 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.07 0.61 6.38 -51.93 -0.33 0.28 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.58 5.73 -51.93 -0.30 0.28 16 LS Contribution 292.74 15.07 4.41 4.41 Total: -1.00 -32.48 292.74 -7.39 -39.87 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.88 Total: 2.40 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.28 Total: 3.43 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.05 Total: -52.52 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.08 Total: -14.76 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.48 -7.39 -39.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335436983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.110 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds