Wall clock time and date at job start Sun Mar 29 2020 22:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.50020 * 2 1 4 4 C 1.53038 * 109.50057 * 239.93408 * 2 1 3 5 5 C 1.53042 * 109.54077 * 178.64967 * 4 2 1 6 6 C 1.53193 * 109.31107 * 61.36808 * 5 4 2 7 7 N 1.46925 * 108.77400 * 305.36204 * 6 5 4 8 8 C 1.34770 * 120.63255 * 233.58993 * 7 6 5 9 9 O 1.21588 * 120.00216 * 185.63968 * 8 7 6 10 10 N 1.34777 * 119.99909 * 5.63728 * 8 7 6 11 11 C 1.46506 * 119.99789 * 174.72869 * 10 8 7 12 12 C 1.50698 * 109.47007 * 180.27382 * 11 10 8 13 13 H 1.07999 * 120.00128 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00165 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00074 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99628 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.46967 * 89.99992 * 16 14 12 18 18 H 1.48510 * 109.46859 * 209.99899 * 16 14 12 19 19 H 1.48496 * 109.47202 * 329.99675 * 16 14 12 20 20 C 1.46934 * 118.73637 * 53.86004 * 7 6 5 21 21 H 1.08997 * 109.58147 * 65.93281 * 20 7 6 22 22 C 1.53002 * 109.58610 * 186.35062 * 20 7 6 23 23 H 1.08997 * 109.47043 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47106 * 300.06819 * 1 2 3 25 25 H 1.09000 * 109.46758 * 60.06756 * 1 2 3 26 26 H 1.09001 * 109.46097 * 58.62632 * 4 2 1 27 27 H 1.08998 * 109.46142 * 298.67425 * 4 2 1 28 28 H 1.09000 * 109.49909 * 301.40981 * 5 4 2 29 29 H 1.09005 * 109.52162 * 181.33296 * 5 4 2 30 30 H 1.08999 * 109.58394 * 185.57683 * 6 5 4 31 31 H 1.08998 * 109.58844 * 65.14759 * 6 5 4 32 32 H 0.96991 * 120.00226 * 355.00147 * 10 8 7 33 33 H 1.08999 * 109.47209 * 300.27150 * 11 10 8 34 34 H 1.08999 * 109.47195 * 60.27138 * 11 10 8 35 35 H 0.97000 * 119.99921 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.46740 * 52.73906 * 22 20 7 37 37 H 1.08997 * 109.47298 * 172.74084 * 22 20 7 38 38 H 1.09004 * 109.46840 * 292.74217 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 3.5709 -0.6939 -1.2666 6 6 4.1060 -1.4255 -0.0315 7 7 3.5054 -0.8283 1.1690 8 6 4.2819 -0.3853 2.1775 9 8 3.7726 0.0122 3.2075 10 7 5.6231 -0.3829 2.0443 11 6 6.4621 0.2046 3.0918 12 6 7.9122 0.0861 2.6992 13 1 8.1819 -0.3798 1.7630 14 6 8.8948 0.5734 3.5349 15 7 10.1603 0.4695 3.1925 16 14 8.4283 1.3799 5.1539 17 1 8.3769 0.3505 6.2229 18 1 9.4411 2.4078 5.5048 19 1 7.0962 2.0226 5.0211 20 6 2.0418 -0.7287 1.2518 21 1 1.6097 -1.7283 1.2984 22 6 1.6513 0.0608 2.5029 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5148 0.8893 25 1 -0.3633 0.5128 -0.8906 26 1 1.6577 -0.2243 -2.1389 27 1 1.6973 -1.7570 -1.2355 28 1 3.9155 0.3401 -1.2547 29 1 3.9339 -1.1881 -2.1678 30 1 5.1902 -1.3229 0.0127 31 1 3.8387 -2.4807 -0.0875 32 1 6.0326 -0.7665 1.2532 33 1 6.2043 1.2563 3.2166 34 1 6.2953 -0.3242 4.0302 35 1 10.8514 0.8126 3.7802 36 1 2.1828 1.0123 2.5125 37 1 0.5770 0.2447 2.4959 38 1 1.9161 -0.5124 3.3915 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335436985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:42 Heat of formation + Delta-G solvation = -26.967964 kcal Electronic energy + Delta-G solvation = -18044.907628 eV Core-core repulsion = 15308.516952 eV Total energy + Delta-G solvation = -2736.390677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.30191 -37.57161 -34.69636 -33.66092 -32.50689 -32.10515 -28.79113 -27.23504 -26.31330 -23.94824 -22.04500 -21.46760 -20.30869 -19.32761 -17.63722 -16.33423 -15.97678 -15.31976 -14.59822 -14.55482 -14.38426 -14.17549 -13.60984 -13.30952 -12.93585 -12.76929 -12.39911 -12.23511 -12.01697 -11.89883 -11.75744 -11.50084 -11.00290 -10.90732 -10.76109 -10.74093 -10.69340 -10.32721 -9.92011 -9.43791 -8.75406 -8.70210 -8.34690 -7.88492 -6.18390 -4.19895 3.14439 3.29967 3.36725 3.45421 3.82244 4.36542 4.50786 4.72987 4.76524 4.78369 4.98152 5.17459 5.24431 5.36815 5.40261 5.48079 5.60761 5.66137 5.67705 5.75227 5.86890 5.97349 6.00481 6.06509 6.14392 6.28424 6.49758 6.63649 6.81813 7.03335 7.16192 7.32862 7.46230 7.58838 8.29743 8.72145 8.83939 9.27635 9.44424 10.93687 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038858 B = 0.005919 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.392128 B = 4729.239557 C = 5265.206330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.136 4.136 6 C 0.112 3.888 7 N -0.635 5.635 8 C 0.698 3.302 9 O -0.594 6.594 10 N -0.725 5.725 11 C 0.238 3.762 12 C -0.541 4.541 13 H 0.078 0.922 14 C 0.078 3.922 15 N -0.894 5.894 16 Si 0.878 3.122 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.169 3.831 21 H 0.062 0.938 22 C -0.135 4.135 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.390 0.610 33 H 0.021 0.979 34 H 0.019 0.981 35 H 0.267 0.733 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.809 -3.017 -9.071 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.012 4.012 7 N -0.374 5.374 8 C 0.400 3.600 9 O -0.474 6.474 10 N -0.380 5.380 11 C 0.115 3.885 12 C -0.579 4.579 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.532 5.532 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.185 1.185 20 C 0.065 3.935 21 H 0.080 0.920 22 C -0.192 4.192 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.226 0.774 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.930 -2.657 -8.221 19.008 hybrid contribution 0.262 0.184 0.296 0.436 sum -16.669 -2.474 -7.925 18.622 Atomic orbital electron populations 1.21826 0.94731 1.01804 1.01905 1.21679 0.95643 1.00304 0.94904 0.90782 1.21560 0.95325 1.00589 0.97490 1.21929 0.96048 1.01711 0.97726 1.21582 0.98309 0.96704 0.84628 1.47349 1.05888 1.65911 1.18212 1.16082 0.81986 0.78845 0.83128 1.90892 1.72454 1.55307 1.28769 1.45674 1.03716 1.63420 1.25189 1.19335 0.89460 0.93217 0.86458 1.21097 0.88239 1.40886 1.07688 0.90426 1.24778 0.94640 0.95042 0.98139 1.69882 0.99517 1.45974 1.37788 0.86804 0.79056 0.79866 0.83882 1.19862 1.20985 1.18481 1.21101 0.78623 0.98417 0.95373 0.91981 1.22200 0.98057 1.01973 0.96971 0.92702 0.92077 0.92693 0.91946 0.91959 0.91332 0.90886 0.89974 0.91809 0.77448 0.96110 0.96345 0.92312 0.91383 0.94380 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.97 37.16 0.33 -0.96 16 2 C -0.11 -1.17 2.36 -90.28 -0.21 -1.38 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.07 5.16 -26.69 -0.14 -1.20 16 5 C -0.14 -1.41 6.08 -26.61 -0.16 -1.57 16 6 C 0.11 1.39 6.43 -3.71 -0.02 1.36 16 7 N -0.63 -9.99 2.97 -170.65 -0.51 -10.50 16 8 C 0.70 14.23 8.11 -86.92 -0.70 13.53 16 9 O -0.59 -13.79 11.91 5.29 0.06 -13.72 16 10 N -0.73 -15.53 5.46 -66.41 -0.36 -15.89 16 11 C 0.24 6.03 4.50 -5.19 -0.02 6.01 16 12 C -0.54 -15.10 9.83 -34.44 -0.34 -15.44 16 13 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 14 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 15 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 16 Si 0.88 21.77 27.47 -169.99 -4.67 17.11 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 20 C 0.17 2.30 2.97 -67.37 -0.20 2.10 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 22 C -0.14 -2.07 7.51 37.16 0.28 -1.79 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.56 6.50 -51.93 -0.34 0.22 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.06 5.56 -51.93 -0.29 0.77 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.39 7.48 5.78 -40.82 -0.24 7.24 16 33 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 34 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 1.22 6.84 -51.93 -0.36 0.86 16 37 H 0.04 0.47 6.36 -51.93 -0.33 0.14 16 38 H 0.08 1.37 6.66 -51.93 -0.35 1.03 16 LS Contribution 291.79 15.07 4.40 4.40 Total: -1.00 -31.53 291.79 -7.64 -39.17 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.04 Total: 2.67 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.29 Total: 2.78 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.10 Total: -52.40 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.06 Total: -13.72 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.53 -7.64 -39.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335436985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.200 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds