Wall clock time and date at job start Sun Mar 29 2020 22:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46949 * 2 1 4 4 N 1.46896 * 109.47185 * 119.99809 * 2 1 3 5 5 C 1.48529 * 111.00139 * 179.71732 * 4 2 1 6 6 C 1.54936 * 103.22693 * 200.27927 * 5 4 2 7 7 C 1.54599 * 102.92350 * 37.41428 * 6 5 4 8 8 H 1.08997 * 110.39382 * 219.08476 * 7 6 5 9 9 N 1.46498 * 110.30749 * 96.95464 * 7 6 5 10 10 C 1.46499 * 120.00481 * 304.28851 * 9 7 6 11 11 C 1.34776 * 119.99629 * 124.28721 * 9 7 6 12 12 O 1.21683 * 120.00372 * 0.02562 * 11 9 7 13 13 C 1.46381 * 120.00019 * 180.02562 * 11 9 7 14 14 H 1.07995 * 119.99743 * 0.02562 * 13 11 9 15 15 C 1.40044 * 120.00114 * 180.02562 * 13 11 9 16 16 N 1.30675 * 120.00213 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00143 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46743 * 269.99677 * 17 15 13 19 19 H 1.48498 * 109.46832 * 29.99621 * 17 15 13 20 20 H 1.48498 * 109.47212 * 149.99856 * 17 15 13 21 21 C 1.47905 * 110.99924 * 62.32206 * 4 2 1 22 22 H 1.09003 * 109.47478 * 300.00395 * 1 2 3 23 23 H 1.09003 * 109.47091 * 60.00120 * 1 2 3 24 24 H 1.09002 * 109.47364 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47063 * 240.00252 * 2 1 3 26 26 H 1.08997 * 109.46976 * 185.67889 * 3 2 1 27 27 H 1.08995 * 109.46912 * 305.67282 * 3 2 1 28 28 H 1.08994 * 109.47069 * 65.67539 * 3 2 1 29 29 H 1.08997 * 110.66632 * 318.71332 * 5 4 2 30 30 H 1.09002 * 110.66641 * 81.67968 * 5 4 2 31 31 H 1.09003 * 110.72921 * 279.05538 * 6 5 4 32 32 H 1.09000 * 110.72772 * 155.76962 * 6 5 4 33 33 H 1.09005 * 109.47008 * 270.00110 * 10 9 7 34 34 H 1.09002 * 109.46686 * 29.99758 * 10 9 7 35 35 H 1.09004 * 109.47455 * 149.99843 * 10 9 7 36 36 H 0.96998 * 120.00333 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.91972 * 26.48503 * 21 4 2 38 38 H 1.09009 * 109.91475 * 265.19680 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.5044 -0.7182 1.2303 6 6 3.8186 -1.8824 2.2032 7 6 2.7212 -2.9186 1.8682 8 1 2.3601 -3.3971 2.7785 9 7 3.2387 -3.9242 0.9370 10 6 3.8220 -3.5080 -0.3409 11 6 3.1783 -5.2323 1.2559 12 8 2.6935 -5.5781 2.3171 13 6 3.6959 -6.2371 0.3257 14 1 4.1265 -5.9302 -0.6159 15 6 3.6326 -7.5963 0.6569 16 7 3.1120 -7.9677 1.7965 17 14 4.2938 -8.8786 -0.5298 18 1 3.2096 -9.3072 -1.4497 19 1 5.4095 -8.2955 -1.3174 20 1 4.7876 -10.0523 0.2342 21 6 1.5916 -2.1082 1.2060 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1252 1.4442 -0.1017 27 1 1.5960 1.9848 -0.8348 28 1 1.7620 1.9262 0.9364 29 1 3.9063 -0.9263 0.2388 30 1 3.8976 0.2235 1.6135 31 1 3.7348 -1.5530 3.2389 32 1 4.8092 -2.2926 2.0068 33 1 3.0417 -3.4701 -1.1012 34 1 4.2705 -2.5206 -0.2310 35 1 4.5875 -4.2235 -0.6411 36 1 3.0685 -8.9091 2.0260 37 1 1.4363 -2.4539 0.1840 38 1 0.6716 -2.2153 1.7808 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335584193.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:53 Heat of formation + Delta-G solvation = -29.087910 kcal Electronic energy + Delta-G solvation = -18126.654357 eV Core-core repulsion = 15390.171752 eV Total energy + Delta-G solvation = -2736.482605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.47865 -37.16486 -34.65699 -32.59914 -32.37696 -29.10141 -28.68724 -26.85785 -26.06849 -25.10422 -21.97796 -20.90462 -19.82707 -18.55958 -16.67950 -16.08340 -15.91102 -15.27371 -14.52194 -14.25926 -13.93226 -13.54394 -13.31255 -12.73350 -12.60723 -12.21802 -12.12018 -11.97153 -11.72073 -11.54761 -11.24875 -11.15592 -11.07409 -10.89151 -10.83499 -10.69271 -10.64486 -10.36045 -10.16513 -10.11746 -8.86860 -8.22559 -7.58410 -7.21004 -6.20372 -4.66169 3.12455 3.19422 3.22434 4.02047 4.14356 4.53218 4.62215 4.91131 4.96934 5.05083 5.33064 5.36914 5.47062 5.61817 5.68557 5.78120 5.79191 5.80211 5.85990 5.90247 5.94638 6.04943 6.19453 6.21684 6.23054 6.30975 6.37294 6.54262 6.63397 6.73006 7.05777 7.29304 7.43200 7.64497 8.13843 8.35673 9.00897 9.41231 10.56406 10.75131 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041628 B = 0.005738 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.463264 B = 4878.695773 C = 4971.999210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 C -0.142 4.142 4 N -0.513 5.513 5 C 0.034 3.966 6 C -0.133 4.133 7 C 0.140 3.860 8 H 0.101 0.899 9 N -0.639 5.639 10 C 0.098 3.902 11 C 0.556 3.444 12 O -0.577 6.577 13 C -0.543 4.543 14 H 0.071 0.929 15 C 0.087 3.913 16 N -0.767 5.767 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.265 1.265 20 H -0.279 1.279 21 C 0.029 3.971 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.268 0.732 37 H 0.050 0.950 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 13.905 -4.937 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.042 4.042 3 C -0.200 4.200 4 N -0.238 5.238 5 C -0.093 4.093 6 C -0.172 4.172 7 C 0.033 3.967 8 H 0.119 0.881 9 N -0.377 5.377 10 C -0.047 4.047 11 C 0.362 3.638 12 O -0.460 6.460 13 C -0.580 4.580 14 H 0.089 0.911 15 C -0.132 4.132 16 N -0.395 5.395 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.189 1.189 20 H -0.204 1.204 21 C -0.100 4.100 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.788 13.830 -3.786 14.360 hybrid contribution 0.624 -0.999 -1.510 1.915 sum -0.164 12.831 -5.296 13.882 Atomic orbital electron populations 1.21829 0.94463 1.02158 1.01675 1.21779 0.95819 0.95072 0.91539 1.21829 1.00715 0.95456 1.01997 1.64871 1.08335 1.13701 1.36890 1.23312 0.88507 0.98929 0.98581 1.22881 0.99815 0.95273 0.99281 1.21424 0.91743 0.88716 0.94772 0.88054 1.48010 1.65244 1.06417 1.18039 1.21457 0.97560 0.99076 0.86576 1.18279 0.78932 0.79514 0.87034 1.90588 1.49919 1.79082 1.26387 1.20999 1.42245 0.90278 1.04443 0.91051 1.25737 0.93339 0.99220 0.94951 1.70020 1.32834 1.16747 1.19920 0.86396 0.79663 0.80160 0.80694 1.19744 1.18915 1.20422 1.23289 0.99349 0.86894 1.00505 0.91939 0.92641 0.92525 0.94302 0.92904 0.92566 0.91848 0.93620 0.90726 0.90792 0.90726 0.95547 0.93723 0.90991 0.92092 0.93178 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.13 37.16 0.34 -1.32 16 2 C 0.07 0.83 2.36 -67.71 -0.16 0.67 16 3 C -0.14 -1.47 8.91 37.16 0.33 -1.14 16 4 N -0.51 -7.48 5.11 -222.50 -1.14 -8.62 16 5 C 0.03 0.48 5.08 -1.90 -0.01 0.47 16 6 C -0.13 -2.18 6.14 -24.87 -0.15 -2.33 16 7 C 0.14 2.78 3.44 -66.57 -0.23 2.55 16 8 H 0.10 2.32 6.96 -51.93 -0.36 1.96 16 9 N -0.64 -14.53 2.72 -174.04 -0.47 -15.01 16 10 C 0.10 1.84 9.13 59.85 0.55 2.38 16 11 C 0.56 15.87 7.61 -12.98 -0.10 15.77 16 12 O -0.58 -18.68 14.38 5.20 0.07 -18.60 16 13 C -0.54 -15.25 8.74 -35.63 -0.31 -15.56 16 14 H 0.07 1.84 5.99 -52.49 -0.31 1.52 16 15 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 16 N -0.77 -22.96 11.83 55.55 0.66 -22.30 16 17 Si 0.91 20.07 29.56 -169.99 -5.02 15.04 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 21 C 0.03 0.49 4.97 -2.75 -0.01 0.48 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.71 7.20 -51.93 -0.37 0.34 16 25 H 0.04 0.52 7.99 -51.93 -0.42 0.10 16 26 H 0.05 0.53 7.24 -51.93 -0.38 0.15 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.64 5.84 -51.93 -0.30 0.33 16 30 H 0.07 0.92 7.78 -51.93 -0.40 0.52 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.26 7.89 -51.93 -0.41 0.85 16 33 H 0.03 0.48 7.92 -51.93 -0.41 0.07 16 34 H 0.04 0.72 4.76 -51.93 -0.25 0.47 16 35 H 0.07 1.40 6.09 -51.93 -0.32 1.08 16 36 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 37 H 0.05 0.90 6.71 -51.93 -0.35 0.56 16 38 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 LS Contribution 295.46 15.07 4.45 4.45 Total: -1.00 -32.63 295.46 -7.26 -39.89 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.95 Total: 0.84 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 0.15 Total: 4.31 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.95 Total: -45.93 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.07 Total: -18.60 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.63 -7.26 -39.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335584193.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.797 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds