Wall clock time and date at job start Sun Mar 29 2020 22:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 110.00163 * 2 1 4 4 C 1.54308 * 109.77750 * 121.15926 * 2 1 3 5 5 C 1.55159 * 102.86710 * 141.88296 * 4 2 1 6 6 C 1.54920 * 101.57966 * 324.30402 * 5 4 2 7 7 H 1.08991 * 110.36756 * 278.17441 * 6 5 4 8 8 C 1.52999 * 110.36653 * 155.84738 * 6 5 4 9 9 N 1.47028 * 109.87876 * 238.90892 * 2 1 3 10 10 C 1.34775 * 125.65065 * 61.68158 * 9 2 1 11 11 O 1.21583 * 120.00141 * 179.69206 * 10 9 2 12 12 N 1.34786 * 119.99796 * 359.68577 * 10 9 2 13 13 C 1.46497 * 119.99733 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46992 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47525 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 14 20 20 H 1.48494 * 109.47225 * 180.27306 * 19 17 15 21 21 H 1.48506 * 109.46866 * 300.27330 * 19 17 15 22 22 H 1.48498 * 109.47306 * 60.26614 * 19 17 15 23 23 H 1.08992 * 109.47730 * 181.09419 * 1 2 3 24 24 H 1.09000 * 109.46795 * 301.09353 * 1 2 3 25 25 H 1.09000 * 109.47327 * 61.08963 * 1 2 3 26 26 H 1.08998 * 110.92210 * 23.46913 * 4 2 1 27 27 H 1.08994 * 110.74411 * 260.21378 * 4 2 1 28 28 H 1.09000 * 111.00835 * 206.23652 * 5 4 2 29 29 H 1.08995 * 111.03904 * 82.39122 * 5 4 2 30 30 H 1.09007 * 109.46749 * 304.59198 * 8 6 5 31 31 H 1.09000 * 109.47172 * 64.59034 * 8 6 5 32 32 H 1.08994 * 109.46949 * 184.59435 * 8 6 5 33 33 H 0.97000 * 119.99687 * 0.02562 * 12 10 9 34 34 H 1.08995 * 109.47421 * 60.00536 * 13 12 10 35 35 H 1.09001 * 109.47150 * 300.00145 * 13 12 10 36 36 H 1.09009 * 109.47378 * 60.00101 * 14 13 12 37 37 H 1.08998 * 109.47458 * 300.00562 * 14 13 12 38 38 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0521 -0.7513 1.2426 5 6 3.2889 -1.5102 0.6931 6 6 2.8190 -1.8763 -0.7370 7 1 2.1970 -2.7710 -0.7145 8 6 4.0241 -2.0870 -1.6558 9 7 2.0299 -0.7140 -1.1840 10 6 1.8084 -0.3611 -2.4658 11 8 2.2779 -1.0258 -3.3691 12 7 1.0664 0.7286 -2.7461 13 6 0.8252 1.1119 -4.1394 14 6 -0.0381 2.3744 -4.1788 15 6 -0.2858 2.7691 -5.6120 16 1 0.1306 2.1783 -6.4144 17 6 -1.0439 3.8845 -5.8987 18 7 -1.5513 4.6037 -4.9216 19 14 -1.3445 4.3780 -7.6751 20 1 -2.1774 5.6068 -7.7132 21 1 -0.0442 4.6405 -8.3427 22 1 -2.0506 3.2791 -8.3815 23 1 -0.3634 -1.0274 0.0196 24 1 -0.3633 0.5307 0.8800 25 1 -0.3634 0.4968 -0.8996 26 1 1.3050 -1.4513 1.6166 27 1 2.3457 -0.0494 2.0230 28 1 3.4897 -2.4067 1.2797 29 1 4.1642 -0.8615 0.6626 30 1 4.6563 -1.1992 -1.6352 31 1 4.5965 -2.9487 -1.3125 32 1 3.6780 -2.2631 -2.6743 33 1 0.6921 1.2590 -2.0254 34 1 0.3089 0.3021 -4.6548 35 1 1.7774 1.3077 -4.6324 36 1 0.4785 3.1842 -3.6634 37 1 -0.9903 2.1791 -3.6856 38 1 -1.3956 4.3472 -3.9991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335859530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:10 Heat of formation + Delta-G solvation = -45.154651 kcal Electronic energy + Delta-G solvation = -17696.122633 eV Core-core repulsion = 14958.943322 eV Total energy + Delta-G solvation = -2737.179311 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.38112 -37.69678 -35.10968 -33.41927 -32.28890 -31.54952 -29.01506 -28.35597 -24.40835 -24.10943 -22.49533 -21.36031 -20.88382 -19.40615 -17.39542 -16.67973 -16.57947 -15.28387 -14.82598 -14.34841 -14.03431 -13.71702 -13.66241 -13.44683 -13.29148 -12.99184 -12.71218 -12.16296 -11.97708 -11.83235 -11.62935 -11.40176 -11.04728 -10.96931 -10.93610 -10.81491 -10.40308 -10.16173 -9.91871 -9.51905 -8.70566 -8.67210 -8.39624 -8.19679 -6.42231 -4.11705 2.88335 3.44651 3.46306 3.56113 3.64913 4.17289 4.36283 4.51516 4.61553 4.69312 4.98390 5.10721 5.17958 5.34847 5.36142 5.45980 5.50787 5.57564 5.63750 5.72160 5.82665 5.91654 6.08630 6.14728 6.17384 6.30489 6.36153 6.62223 6.66211 6.96785 7.24309 7.38620 7.42892 8.10837 8.36584 8.40430 8.81749 9.00376 9.60146 10.98834 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042198 B = 0.004867 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.373625 B = 5751.930085 C = 6269.536680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.125 3.875 3 H 0.073 0.927 4 C -0.125 4.125 5 C -0.131 4.131 6 C 0.154 3.846 7 H 0.068 0.932 8 C -0.166 4.166 9 N -0.636 5.636 10 C 0.719 3.281 11 O -0.591 6.591 12 N -0.741 5.741 13 C 0.146 3.854 14 C 0.000 4.000 15 C -0.601 4.601 16 H 0.053 0.947 17 C 0.017 3.983 18 N -0.911 5.911 19 Si 1.071 2.929 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.391 0.609 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 -10.647 14.418 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.021 3.979 3 H 0.091 0.909 4 C -0.163 4.163 5 C -0.169 4.169 6 C 0.050 3.950 7 H 0.086 0.914 8 C -0.224 4.224 9 N -0.376 5.376 10 C 0.422 3.578 11 O -0.470 6.470 12 N -0.396 5.396 13 C 0.024 3.976 14 C -0.037 4.037 15 C -0.639 4.639 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.547 5.547 19 Si 0.899 3.101 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.213 1.213 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.227 0.773 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.717 -9.962 12.660 17.454 hybrid contribution 0.528 -0.834 1.430 1.738 sum 7.245 -10.797 14.090 19.172 Atomic orbital electron populations 1.22334 0.94939 1.02838 1.02821 1.21587 0.94317 0.96438 0.85603 0.90932 1.22649 0.97805 0.99536 0.96283 1.22893 0.97958 1.00836 0.95251 1.21645 0.92264 0.88082 0.93032 0.91358 1.22206 0.96574 1.01027 1.02580 1.47804 1.56065 1.30151 1.03569 1.15568 0.79581 0.81525 0.81168 1.90810 1.56440 1.55399 1.44375 1.45784 1.55077 1.28211 1.10535 1.21421 0.99729 0.98134 0.78356 1.19448 0.94088 0.91429 0.98743 1.21883 1.36504 1.14203 0.91330 0.92848 1.25880 0.93313 0.93245 1.06223 1.70805 1.43301 1.39871 1.00690 0.83506 0.76504 0.76310 0.73765 1.20749 1.21320 1.21322 0.91976 0.91230 0.91709 0.90409 0.90137 0.90024 0.90560 0.92894 0.92596 0.88946 0.77319 0.92616 0.92653 0.96971 0.96967 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.02 37.16 0.33 -1.52 16 2 C 0.12 1.39 3.09 -66.96 -0.21 1.18 16 3 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 4 C -0.12 -1.01 6.47 -24.90 -0.16 -1.17 16 5 C -0.13 -1.12 6.50 -24.58 -0.16 -1.28 16 6 C 0.15 1.86 3.77 -66.41 -0.25 1.61 16 7 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 8 C -0.17 -2.16 8.76 37.16 0.33 -1.83 16 9 N -0.64 -9.23 2.98 -161.23 -0.48 -9.71 16 10 C 0.72 13.57 8.06 -86.91 -0.70 12.87 16 11 O -0.59 -13.05 13.97 5.29 0.07 -12.97 16 12 N -0.74 -14.10 5.08 -65.23 -0.33 -14.43 16 13 C 0.15 3.30 5.61 -4.04 -0.02 3.28 16 14 C 0.00 0.01 4.40 -27.88 -0.12 -0.11 16 15 C -0.60 -17.18 9.11 -34.44 -0.31 -17.49 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 18 N -0.91 -27.58 13.65 55.43 0.76 -26.82 16 19 Si 1.07 25.31 29.90 -169.99 -5.08 20.23 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.84 5.73 -51.93 -0.30 0.55 16 26 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 30 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.52 5.79 -51.93 -0.30 1.22 16 33 H 0.39 6.65 5.58 -40.82 -0.23 6.42 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.01 0.32 8.01 -51.92 -0.42 -0.10 16 37 H 0.01 0.32 8.00 -51.93 -0.42 -0.10 16 38 H 0.27 8.00 7.22 -40.82 -0.29 7.71 16 LS Contribution 302.51 15.07 4.56 4.56 Total: -1.00 -32.69 302.51 -8.09 -40.78 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.21 Total: 2.44 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.37 Total: -4.07 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.06 Total: -50.96 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.69 -8.09 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335859530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.378 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds