Wall clock time and date at job start Sun Mar 29 2020 22:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 110.00163 * 2 1 4 4 C 1.54308 * 109.77750 * 121.15926 * 2 1 3 5 5 C 1.55159 * 102.86710 * 141.88296 * 4 2 1 6 6 C 1.54920 * 101.57966 * 324.30402 * 5 4 2 7 7 H 1.08991 * 110.36756 * 278.17441 * 6 5 4 8 8 C 1.52999 * 110.36653 * 155.84738 * 6 5 4 9 9 N 1.47028 * 109.87876 * 238.90892 * 2 1 3 10 10 C 1.34775 * 125.65065 * 61.68158 * 9 2 1 11 11 O 1.21583 * 120.00141 * 179.69206 * 10 9 2 12 12 N 1.34786 * 119.99796 * 359.68577 * 10 9 2 13 13 C 1.46497 * 119.99733 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46992 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47525 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 14 20 20 H 1.48494 * 109.47225 * 180.27306 * 19 17 15 21 21 H 1.48506 * 109.46866 * 300.27330 * 19 17 15 22 22 H 1.48498 * 109.47306 * 60.26614 * 19 17 15 23 23 H 1.08992 * 109.47730 * 181.09419 * 1 2 3 24 24 H 1.09000 * 109.46795 * 301.09353 * 1 2 3 25 25 H 1.09000 * 109.47327 * 61.08963 * 1 2 3 26 26 H 1.08998 * 110.92210 * 23.46913 * 4 2 1 27 27 H 1.08994 * 110.74411 * 260.21378 * 4 2 1 28 28 H 1.09000 * 111.00835 * 206.23652 * 5 4 2 29 29 H 1.08995 * 111.03904 * 82.39122 * 5 4 2 30 30 H 1.09007 * 109.46749 * 304.59198 * 8 6 5 31 31 H 1.09000 * 109.47172 * 64.59034 * 8 6 5 32 32 H 1.08994 * 109.46949 * 184.59435 * 8 6 5 33 33 H 0.97000 * 119.99687 * 0.02562 * 12 10 9 34 34 H 1.08995 * 109.47421 * 60.00536 * 13 12 10 35 35 H 1.09001 * 109.47150 * 300.00145 * 13 12 10 36 36 H 1.09009 * 109.47378 * 60.00101 * 14 13 12 37 37 H 1.08998 * 109.47458 * 300.00562 * 14 13 12 38 38 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0521 -0.7513 1.2426 5 6 3.2889 -1.5102 0.6931 6 6 2.8190 -1.8763 -0.7370 7 1 2.1970 -2.7710 -0.7145 8 6 4.0241 -2.0870 -1.6558 9 7 2.0299 -0.7140 -1.1840 10 6 1.8084 -0.3611 -2.4658 11 8 2.2779 -1.0258 -3.3691 12 7 1.0664 0.7286 -2.7461 13 6 0.8252 1.1119 -4.1394 14 6 -0.0381 2.3744 -4.1788 15 6 -0.2858 2.7691 -5.6120 16 1 0.1306 2.1783 -6.4144 17 6 -1.0439 3.8845 -5.8987 18 7 -1.5513 4.6037 -4.9216 19 14 -1.3445 4.3780 -7.6751 20 1 -2.1774 5.6068 -7.7132 21 1 -0.0442 4.6405 -8.3427 22 1 -2.0506 3.2791 -8.3815 23 1 -0.3634 -1.0274 0.0196 24 1 -0.3633 0.5307 0.8800 25 1 -0.3634 0.4968 -0.8996 26 1 1.3050 -1.4513 1.6166 27 1 2.3457 -0.0494 2.0230 28 1 3.4897 -2.4067 1.2797 29 1 4.1642 -0.8615 0.6626 30 1 4.6563 -1.1992 -1.6352 31 1 4.5965 -2.9487 -1.3125 32 1 3.6780 -2.2631 -2.6743 33 1 0.6921 1.2590 -2.0254 34 1 0.3089 0.3021 -4.6548 35 1 1.7774 1.3077 -4.6324 36 1 0.4785 3.1842 -3.6634 37 1 -0.9903 2.1791 -3.6856 38 1 -1.3956 4.3472 -3.9991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335859530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:10 Heat of formation + Delta-G solvation = -66.237480 kcal Electronic energy + Delta-G solvation = -17697.036853 eV Core-core repulsion = 14958.943322 eV Total energy + Delta-G solvation = -2738.093531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.62363 -38.95245 -36.89201 -35.24573 -33.53073 -32.71250 -30.78068 -29.35478 -26.40762 -24.95118 -24.02985 -22.94095 -21.90642 -20.83601 -18.94591 -18.34960 -17.78515 -16.82908 -16.30673 -15.81495 -15.60384 -15.14008 -15.04062 -14.70820 -14.29778 -14.14461 -13.97580 -13.66383 -13.57267 -13.07811 -12.83688 -12.75522 -12.39882 -12.30491 -12.09072 -11.90706 -11.85641 -11.72471 -11.62874 -11.06247 -10.75558 -10.59246 -10.23079 -9.53273 -8.73712 -6.44578 1.53358 1.60555 1.61901 1.82076 2.08156 2.55018 2.94494 3.12188 3.56970 3.68114 3.94489 4.06851 4.25524 4.27301 4.30684 4.31727 4.44003 4.63005 4.64064 4.71843 4.77977 4.82348 4.95714 5.05499 5.09672 5.11568 5.21389 5.25222 5.29890 5.34369 5.45819 5.58298 5.92355 6.05074 6.11658 6.51141 6.95651 7.35448 7.53008 8.68448 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042198 B = 0.004867 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.373625 B = 5751.930085 C = 6269.536680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.119 4.119 6 C 0.140 3.860 7 H 0.073 0.927 8 C -0.161 4.161 9 N -0.633 5.633 10 C 0.712 3.288 11 O -0.630 6.630 12 N -0.737 5.737 13 C 0.167 3.833 14 C 0.010 3.990 15 C -0.623 4.623 16 H 0.050 0.950 17 C -0.030 4.030 18 N -0.931 5.931 19 Si 1.119 2.881 20 H -0.280 1.280 21 H -0.270 1.270 22 H -0.270 1.270 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.036 0.964 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.402 0.598 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.540 -11.199 16.085 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.157 4.157 6 C 0.038 3.962 7 H 0.091 0.909 8 C -0.219 4.219 9 N -0.371 5.371 10 C 0.414 3.586 11 O -0.512 6.512 12 N -0.394 5.394 13 C 0.043 3.957 14 C -0.027 4.027 15 C -0.661 4.661 16 H 0.068 0.932 17 C -0.229 4.229 18 N -0.568 5.568 19 Si 0.939 3.061 20 H -0.205 1.205 21 H -0.195 1.195 22 H -0.195 1.195 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.055 0.945 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.239 0.761 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.123 -10.536 14.408 19.218 hybrid contribution 0.432 -0.714 0.988 1.293 sum 7.555 -11.250 15.396 20.511 Atomic orbital electron populations 1.22310 0.94747 1.02848 1.02652 1.21928 0.94545 0.96766 0.85687 0.90958 1.22674 0.97675 0.99856 0.94929 1.22875 0.98008 1.02201 0.92580 1.21989 0.91686 0.87473 0.95074 0.90937 1.22111 0.97181 1.01838 1.00736 1.47920 1.55506 1.30837 1.02826 1.15745 0.79297 0.81016 0.82498 1.90793 1.57782 1.56425 1.46211 1.45513 1.55647 1.28896 1.09314 1.20903 0.98162 0.96340 0.80331 1.19276 0.93961 0.92249 0.97256 1.22290 1.36637 1.14526 0.92694 0.93158 1.27392 0.92604 0.93175 1.09695 1.70925 1.44556 1.40665 1.00641 0.82912 0.77356 0.76526 0.69276 1.20511 1.19550 1.19524 0.91979 0.88608 0.94457 0.88931 0.87682 0.87037 0.90464 0.93847 0.89605 0.92905 0.76089 0.93927 0.93980 0.97838 0.97776 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 9.02 71.98 0.65 -2.73 16 2 C 0.11 2.31 3.09 45.33 0.14 2.45 16 3 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 4 C -0.11 -1.38 6.47 31.78 0.21 -1.18 16 5 C -0.12 -1.59 6.50 31.99 0.21 -1.38 16 6 C 0.14 3.17 3.77 45.47 0.17 3.34 16 7 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 8 C -0.16 -4.09 8.76 71.98 0.63 -3.46 16 9 N -0.63 -17.92 2.98 -782.29 -2.33 -20.26 16 10 C 0.71 27.45 8.06 179.05 1.44 28.89 16 11 O -0.63 -28.88 13.97 -3.98 -0.06 -28.93 16 12 N -0.74 -28.81 5.08 -478.54 -2.43 -31.25 16 13 C 0.17 7.80 5.61 86.38 0.48 8.29 16 14 C 0.01 0.53 4.40 29.85 0.13 0.66 16 15 C -0.62 -36.18 9.11 25.60 0.23 -35.95 16 16 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 17 C -0.03 -1.76 5.46 84.65 0.46 -1.30 16 18 N -0.93 -56.87 13.65 21.45 0.29 -56.58 16 19 Si 1.12 50.43 29.90 68.60 2.05 52.48 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 24 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.04 0.96 5.73 -2.39 -0.01 0.94 16 26 H 0.09 0.92 7.85 -2.39 -0.02 0.90 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.07 8.04 -2.39 -0.02 1.05 16 30 H 0.04 1.15 8.13 -2.38 -0.02 1.13 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.79 5.79 -2.39 -0.01 1.78 16 33 H 0.40 13.92 5.58 -92.71 -0.52 13.41 16 34 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.00 0.18 8.01 -2.38 -0.02 0.16 16 37 H 0.00 0.21 8.00 -2.39 -0.02 0.19 16 38 H 0.26 15.74 7.22 -92.70 -0.67 15.07 16 Total: -1.00 -72.33 302.51 2.90 -69.44 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.61 Total: 17.47 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 4.76 Total: -2.37 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.47 Total: -108.08 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.06 Total: -28.93 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.05 Total: 52.48 kcal Total: -72.33 2.90 -69.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335859530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.199 kcal (2) G-P(sol) polarization free energy of solvation -72.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds