Wall clock time and date at job start Sun Mar 29 2020 22:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.58048 * 2 1 4 4 C 1.53189 * 109.58781 * 239.57495 * 2 1 3 5 5 C 1.53035 * 109.31435 * 185.57778 * 4 2 1 6 6 C 1.53040 * 109.54075 * 61.35915 * 5 4 2 7 7 C 1.53626 * 109.24409 * 298.51763 * 6 5 4 8 8 N 1.46921 * 108.54442 * 54.85356 * 7 6 5 9 9 C 1.34770 * 120.63537 * 126.37321 * 8 7 6 10 10 O 1.21582 * 120.00445 * 173.80475 * 9 8 7 11 11 N 1.34786 * 119.99762 * 354.06923 * 9 8 7 12 12 C 1.46491 * 120.00098 * 185.01306 * 11 9 8 13 13 C 1.52998 * 109.47212 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47301 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00114 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00072 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00124 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47291 * 59.99486 * 18 16 14 20 20 H 1.48503 * 109.47306 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46792 * 299.99801 * 18 16 14 22 22 H 1.08997 * 109.46996 * 305.66812 * 1 2 3 23 23 H 1.09002 * 109.47283 * 65.66989 * 1 2 3 24 24 H 1.09006 * 109.47104 * 185.66933 * 1 2 3 25 25 H 1.09004 * 109.49562 * 305.52516 * 4 2 1 26 26 H 1.09002 * 109.49974 * 65.62401 * 4 2 1 27 27 H 1.09003 * 109.46374 * 181.38415 * 5 4 2 28 28 H 1.09005 * 109.45644 * 301.35743 * 5 4 2 29 29 H 1.09001 * 109.49396 * 58.58825 * 6 5 4 30 30 H 1.09004 * 109.49985 * 178.68575 * 6 5 4 31 31 H 1.08997 * 109.73405 * 295.11692 * 7 6 5 32 32 H 1.08995 * 109.66155 * 174.54653 * 7 6 5 33 33 H 0.96996 * 119.99513 * 5.02047 * 11 9 8 34 34 H 1.09003 * 109.47477 * 300.00680 * 12 11 9 35 35 H 1.09002 * 109.47233 * 60.00858 * 12 11 9 36 36 H 1.09003 * 109.47107 * 300.00480 * 13 12 11 37 37 H 1.09000 * 109.46908 * 60.00563 * 13 12 11 38 38 H 0.96993 * 119.99893 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2445 5 6 3.5675 -0.8494 -1.1691 6 6 3.9570 -1.6655 0.0656 7 6 3.4656 -0.9402 1.3276 8 7 2.0226 -0.6980 1.1954 9 6 1.1675 -1.1034 2.1550 10 8 -0.0079 -0.7994 2.0899 11 7 1.6163 -1.8413 3.1897 12 6 0.6711 -2.3745 4.1737 13 6 1.4341 -3.1684 5.2359 14 6 0.4617 -3.7174 6.2478 15 1 -0.5949 -3.5196 6.1439 16 6 0.9210 -4.4715 7.3067 17 7 2.2078 -4.7121 7.4335 18 14 -0.2845 -5.1527 8.5606 19 1 -1.2560 -6.0454 7.8792 20 1 0.4562 -5.9232 9.5917 21 1 -1.0121 -4.0314 9.2076 22 1 -0.3633 0.5992 0.8349 23 1 -0.3634 0.4234 -0.9364 24 1 -0.3634 -1.0227 0.1015 25 1 1.6030 -1.7269 -1.2891 26 1 1.7660 -0.1694 -2.1366 27 1 3.9378 -1.3473 -2.0652 28 1 4.0061 0.1461 -1.0992 29 1 3.4984 -2.6527 0.0086 30 1 5.0413 -1.7693 0.1059 31 1 3.9877 0.0109 1.4323 32 1 3.6532 -1.5608 2.2037 33 1 2.5653 -2.0192 3.2828 34 1 0.1382 -1.5510 4.6491 35 1 -0.0431 -3.0290 3.6739 36 1 1.9673 -3.9919 4.7607 37 1 2.1480 -2.5137 5.7357 38 1 2.5308 -5.2429 8.1783 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335991993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:37 Heat of formation + Delta-G solvation = -33.148865 kcal Electronic energy + Delta-G solvation = -17646.916226 eV Core-core repulsion = 14910.257525 eV Total energy + Delta-G solvation = -2736.658701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37141 -37.42410 -35.07234 -33.27645 -32.63133 -32.08856 -29.33010 -27.33424 -24.94319 -24.27656 -22.26403 -21.13081 -20.69441 -19.33488 -17.48588 -16.40267 -15.95290 -15.37142 -14.57035 -14.55195 -14.36129 -14.24833 -13.94026 -13.60785 -13.21733 -12.68044 -12.37391 -12.25254 -12.05998 -11.70380 -11.19426 -11.11213 -11.01458 -10.97443 -10.79478 -10.70651 -10.59806 -10.26793 -9.60323 -9.32494 -8.87619 -8.56876 -8.41825 -8.11390 -6.07078 -4.09646 2.96098 3.32967 3.36535 3.40278 3.61621 4.26266 4.45706 4.68033 4.72618 4.73823 4.95902 5.18374 5.29943 5.30215 5.37303 5.55067 5.59913 5.72206 5.76739 5.86699 5.91487 5.93488 6.14430 6.30510 6.37344 6.44279 6.56750 6.81170 6.87546 7.10580 7.27096 7.58635 7.66011 7.92143 8.28612 8.44540 8.95324 9.07489 9.54949 11.04622 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042687 B = 0.004709 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.776619 B = 5944.045097 C = 6437.160314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.132 4.132 5 C -0.118 4.118 6 C -0.136 4.136 7 C 0.111 3.889 8 N -0.633 5.633 9 C 0.701 3.299 10 O -0.589 6.589 11 N -0.741 5.741 12 C 0.140 3.860 13 C 0.013 3.987 14 C -0.520 4.520 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.080 0.920 23 H 0.036 0.964 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.390 0.610 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.909 7.929 -16.264 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.082 0.918 4 C -0.171 4.171 5 C -0.156 4.156 6 C -0.174 4.174 7 C -0.013 4.013 8 N -0.372 5.372 9 C 0.403 3.597 10 O -0.468 6.468 11 N -0.397 5.397 12 C 0.017 3.983 13 C -0.024 4.024 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 H 0.099 0.901 23 H 0.055 0.945 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.226 0.774 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.143 8.027 -16.163 18.516 hybrid contribution 0.080 -0.583 0.786 0.982 sum 4.223 7.444 -15.377 17.599 Atomic orbital electron populations 1.22175 0.92562 1.04116 1.00403 1.21020 0.95850 0.94233 0.83061 0.91805 1.22036 0.95828 1.01578 0.97639 1.21500 0.95920 1.00292 0.97858 1.22001 1.00999 0.99681 0.94735 1.21690 0.81118 1.00096 0.98365 1.47361 1.06180 1.62591 1.21106 1.16037 0.84767 0.79002 0.79867 1.90911 1.15917 1.61699 1.78296 1.45825 1.11381 1.55451 1.27068 1.21563 0.91416 0.96857 0.88465 1.19314 0.96034 0.94758 0.92311 1.21018 0.93671 1.32516 1.08707 0.92286 1.24990 0.95238 0.96104 0.97919 1.69948 1.12919 1.39344 1.31209 0.86572 0.80975 0.79134 0.80844 1.20123 1.21264 1.20106 0.90104 0.94483 0.91565 0.91473 0.91045 0.91874 0.91914 0.91302 0.90847 0.91575 0.90090 0.77402 0.92774 0.92968 0.96082 0.96045 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.61 37.16 0.28 -1.62 16 2 C 0.16 2.00 3.49 -67.60 -0.24 1.76 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.13 -1.31 5.37 -26.62 -0.14 -1.45 16 5 C -0.12 -1.00 5.88 -26.69 -0.16 -1.16 16 6 C -0.14 -1.26 6.10 -26.39 -0.16 -1.42 16 7 C 0.11 1.22 6.46 -3.49 -0.02 1.20 16 8 N -0.63 -8.96 2.97 -170.65 -0.51 -9.47 16 9 C 0.70 12.81 8.10 -86.92 -0.70 12.11 16 10 O -0.59 -12.44 11.92 5.29 0.06 -12.37 16 11 N -0.74 -13.77 5.47 -65.23 -0.36 -14.12 16 12 C 0.14 3.08 5.62 -4.05 -0.02 3.06 16 13 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 14 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 18 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H 0.08 1.33 6.54 -51.93 -0.34 0.99 16 23 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 1.09 6.95 -51.93 -0.36 0.72 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.90 5.56 -51.93 -0.29 0.61 16 33 H 0.39 6.41 5.93 -40.82 -0.24 6.17 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 299.68 15.07 4.52 4.52 Total: -1.00 -31.18 299.68 -8.55 -39.73 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.27 Total: 1.44 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.72 Total: -0.66 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.13 Total: -49.16 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.06 Total: -12.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.18 -8.55 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335991993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.581 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds