Wall clock time and date at job start Sun Mar 29 2020 22:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.58048 * 2 1 4 4 C 1.53189 * 109.58781 * 239.57495 * 2 1 3 5 5 C 1.53035 * 109.31435 * 185.57778 * 4 2 1 6 6 C 1.53040 * 109.54075 * 61.35915 * 5 4 2 7 7 C 1.53626 * 109.24409 * 298.51763 * 6 5 4 8 8 N 1.46921 * 108.54442 * 54.85356 * 7 6 5 9 9 C 1.34770 * 120.63537 * 126.37321 * 8 7 6 10 10 O 1.21582 * 120.00445 * 173.80475 * 9 8 7 11 11 N 1.34786 * 119.99762 * 354.06923 * 9 8 7 12 12 C 1.46491 * 120.00098 * 185.01306 * 11 9 8 13 13 C 1.52998 * 109.47212 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47301 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00114 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00072 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00124 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47291 * 59.99486 * 18 16 14 20 20 H 1.48503 * 109.47306 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46792 * 299.99801 * 18 16 14 22 22 H 1.08997 * 109.46996 * 305.66812 * 1 2 3 23 23 H 1.09002 * 109.47283 * 65.66989 * 1 2 3 24 24 H 1.09006 * 109.47104 * 185.66933 * 1 2 3 25 25 H 1.09004 * 109.49562 * 305.52516 * 4 2 1 26 26 H 1.09002 * 109.49974 * 65.62401 * 4 2 1 27 27 H 1.09003 * 109.46374 * 181.38415 * 5 4 2 28 28 H 1.09005 * 109.45644 * 301.35743 * 5 4 2 29 29 H 1.09001 * 109.49396 * 58.58825 * 6 5 4 30 30 H 1.09004 * 109.49985 * 178.68575 * 6 5 4 31 31 H 1.08997 * 109.73405 * 295.11692 * 7 6 5 32 32 H 1.08995 * 109.66155 * 174.54653 * 7 6 5 33 33 H 0.96996 * 119.99513 * 5.02047 * 11 9 8 34 34 H 1.09003 * 109.47477 * 300.00680 * 12 11 9 35 35 H 1.09002 * 109.47233 * 60.00858 * 12 11 9 36 36 H 1.09003 * 109.47107 * 300.00480 * 13 12 11 37 37 H 1.09000 * 109.46908 * 60.00563 * 13 12 11 38 38 H 0.96993 * 119.99893 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2445 5 6 3.5675 -0.8494 -1.1691 6 6 3.9570 -1.6655 0.0656 7 6 3.4656 -0.9402 1.3276 8 7 2.0226 -0.6980 1.1954 9 6 1.1675 -1.1034 2.1550 10 8 -0.0079 -0.7994 2.0899 11 7 1.6163 -1.8413 3.1897 12 6 0.6711 -2.3745 4.1737 13 6 1.4341 -3.1684 5.2359 14 6 0.4617 -3.7174 6.2478 15 1 -0.5949 -3.5196 6.1439 16 6 0.9210 -4.4715 7.3067 17 7 2.2078 -4.7121 7.4335 18 14 -0.2845 -5.1527 8.5606 19 1 -1.2560 -6.0454 7.8792 20 1 0.4562 -5.9232 9.5917 21 1 -1.0121 -4.0314 9.2076 22 1 -0.3633 0.5992 0.8349 23 1 -0.3634 0.4234 -0.9364 24 1 -0.3634 -1.0227 0.1015 25 1 1.6030 -1.7269 -1.2891 26 1 1.7660 -0.1694 -2.1366 27 1 3.9378 -1.3473 -2.0652 28 1 4.0061 0.1461 -1.0992 29 1 3.4984 -2.6527 0.0086 30 1 5.0413 -1.7693 0.1059 31 1 3.9877 0.0109 1.4323 32 1 3.6532 -1.5608 2.2037 33 1 2.5653 -2.0192 3.2828 34 1 0.1382 -1.5510 4.6491 35 1 -0.0431 -3.0290 3.6739 36 1 1.9673 -3.9919 4.7607 37 1 2.1480 -2.5137 5.7357 38 1 2.5308 -5.2429 8.1783 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335991993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:37 Heat of formation + Delta-G solvation = -52.681135 kcal Electronic energy + Delta-G solvation = -17647.763209 eV Core-core repulsion = 14910.257525 eV Total energy + Delta-G solvation = -2737.505684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.63494 -38.59885 -36.72691 -35.07035 -33.74792 -33.38485 -31.13521 -28.38937 -26.74012 -25.40634 -23.57235 -22.51708 -22.01105 -20.57369 -18.77543 -18.42548 -17.26849 -16.74634 -16.49459 -15.71964 -15.49951 -15.40353 -15.11650 -14.89960 -14.43792 -14.22533 -14.04615 -13.38252 -13.29155 -13.06417 -12.91422 -12.65140 -12.52619 -12.23000 -12.00490 -11.89532 -11.63820 -11.59357 -11.45662 -11.42707 -10.59643 -10.30555 -10.03840 -9.39157 -8.23811 -6.34435 1.41904 1.44600 1.52362 1.71203 2.18278 2.41095 3.01695 3.10830 3.83678 3.87870 3.95816 4.10570 4.31758 4.38407 4.45311 4.50966 4.54144 4.68477 4.78587 4.84538 4.85916 4.97533 5.05775 5.11482 5.19932 5.26798 5.30466 5.39668 5.48941 5.57677 5.58130 5.78212 5.80336 5.99205 6.17332 6.78166 7.03610 7.34890 7.63693 8.88045 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042687 B = 0.004709 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.776619 B = 5944.045097 C = 6437.160314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.126 4.126 5 C -0.114 4.114 6 C -0.132 4.132 7 C 0.103 3.897 8 N -0.627 5.627 9 C 0.695 3.305 10 O -0.623 6.623 11 N -0.739 5.739 12 C 0.162 3.838 13 C 0.025 3.975 14 C -0.548 4.548 15 H 0.058 0.942 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.966 3.034 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.269 1.269 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.035 0.965 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.751 8.440 -17.365 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.170 4.170 7 C -0.019 4.019 8 N -0.365 5.365 9 C 0.397 3.603 10 O -0.505 6.505 11 N -0.397 5.397 12 C 0.037 3.963 13 C -0.012 4.012 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.190 4.190 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.194 1.194 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.239 0.761 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.031 8.554 -17.308 19.951 hybrid contribution -0.148 -0.699 1.068 1.285 sum 4.884 7.855 -16.240 18.690 Atomic orbital electron populations 1.22002 0.94173 1.01710 1.00618 1.21287 0.94650 0.95510 0.83322 0.89812 1.21998 0.96961 1.00542 0.96961 1.21509 0.94562 1.01167 0.97923 1.21995 1.02229 0.98658 0.94159 1.21981 0.79172 1.01461 0.99331 1.47476 1.07126 1.61537 1.20396 1.16231 0.84865 0.78934 0.80314 1.90905 1.17627 1.62895 1.79099 1.45565 1.11393 1.55805 1.26899 1.21033 0.91222 0.95774 0.88235 1.19109 0.95416 0.94166 0.92519 1.21425 0.94185 1.33177 1.09822 0.92339 1.25866 0.97078 0.96208 0.99877 1.70053 1.14670 1.39865 1.32016 0.85492 0.78694 0.78598 0.78222 1.19355 1.20463 1.19353 0.93035 0.91608 0.94631 0.93215 0.88705 0.90248 0.90327 0.92977 0.88503 0.89370 0.90718 0.76143 0.93993 0.94065 0.97483 0.97475 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 7.61 71.98 0.55 -3.02 16 2 C 0.15 3.57 3.49 44.97 0.16 3.72 16 3 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.13 -2.17 5.37 30.67 0.16 -2.00 16 5 C -0.11 -1.52 5.88 30.62 0.18 -1.34 16 6 C -0.13 -2.11 6.10 30.82 0.19 -1.92 16 7 C 0.10 2.07 6.46 86.51 0.56 2.63 16 8 N -0.63 -17.24 2.97 -812.08 -2.41 -19.65 16 9 C 0.69 25.79 8.10 179.05 1.45 27.24 16 10 O -0.62 -27.25 11.92 -3.97 -0.05 -27.29 16 11 N -0.74 -28.05 5.47 -478.55 -2.62 -30.67 16 12 C 0.16 7.36 5.62 86.38 0.49 7.84 16 13 C 0.03 1.32 5.09 29.85 0.15 1.47 16 14 C -0.55 -31.21 9.11 25.60 0.23 -30.97 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.01 0.48 5.46 84.65 0.46 0.95 16 17 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 18 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H 0.05 1.73 6.54 -2.39 -0.02 1.72 16 23 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.03 1.19 6.95 -2.38 -0.02 1.18 16 25 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.59 5.56 -2.39 -0.01 1.58 16 33 H 0.40 13.34 5.93 -92.71 -0.55 12.79 16 34 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -68.13 299.68 2.30 -65.83 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.48 Total: 15.62 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 4.58 Total: 4.60 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -4.74 Total: -104.82 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -68.13 2.30 -65.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335991993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.151 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds