Wall clock time and date at job start Sun Mar 29 2020 22:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.88372 * 2 1 4 4 C 1.54913 * 110.99910 * 236.12318 * 2 1 3 5 5 N 1.47428 * 104.82719 * 204.91558 * 4 2 1 6 6 C 1.34779 * 125.64713 * 204.09531 * 5 4 2 7 7 O 1.21578 * 120.00007 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99815 * 0.02562 * 6 5 4 9 9 C 1.46497 * 120.00016 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47115 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47021 * 108.70456 * 24.35467 * 5 4 2 19 19 C 1.52999 * 109.88053 * 118.13018 * 18 5 4 20 20 C 1.52998 * 109.88355 * 239.29483 * 18 5 4 21 21 C 1.54332 * 107.26396 * 358.58912 * 18 5 4 22 22 H 1.09006 * 109.47075 * 182.43162 * 1 2 3 23 23 H 1.09001 * 109.46794 * 302.42214 * 1 2 3 24 24 H 1.08997 * 109.47697 * 62.42253 * 1 2 3 25 25 H 1.08997 * 110.36766 * 86.08030 * 4 2 1 26 26 H 1.09003 * 110.36767 * 323.75012 * 4 2 1 27 27 H 0.97001 * 119.99765 * 0.02562 * 8 6 5 28 28 H 1.09007 * 109.47078 * 59.99547 * 9 8 6 29 29 H 1.09003 * 109.46733 * 300.00270 * 9 8 6 30 30 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.46907 * 61.45868 * 19 18 5 32 32 H 1.08998 * 109.47032 * 181.45140 * 19 18 5 33 33 H 1.08993 * 109.47523 * 301.45548 * 19 18 5 34 34 H 1.09000 * 109.47039 * 58.55075 * 20 18 5 35 35 H 1.08998 * 109.47467 * 178.54747 * 20 18 5 36 36 H 1.08997 * 109.47300 * 298.55124 * 20 18 5 37 37 H 1.09012 * 110.84500 * 219.67140 * 21 18 5 38 38 H 1.08997 * 110.51872 * 96.45230 * 21 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4271 -1.2428 -0.7739 6 6 4.4476 -1.5609 -1.5948 7 8 5.5153 -1.9103 -1.1300 8 7 4.2845 -1.4917 -2.9309 9 6 5.3935 -1.8380 -3.8232 10 6 4.9540 -1.6792 -5.2558 11 1 3.9489 -1.3533 -5.4795 12 6 5.8348 -1.9510 -6.2813 13 7 7.0585 -2.3483 -6.0091 14 14 5.2897 -1.7548 -8.0572 15 1 4.7161 -3.0353 -8.5434 16 1 4.2613 -0.6870 -8.1443 17 1 6.4585 -1.3859 -8.8958 18 6 3.4658 -1.2797 0.6953 19 6 3.7385 -2.7074 1.1729 20 6 4.5559 -0.3382 1.2110 21 6 2.0862 -0.8085 1.2018 22 1 -0.3633 -1.0268 0.0436 23 1 -0.3633 0.5510 0.8675 24 1 -0.3634 0.4757 -0.9108 25 1 2.1559 -0.1711 -2.0838 26 1 1.4518 -1.6698 -1.4031 27 1 3.4327 -1.2125 -3.3016 28 1 5.6921 -2.8716 -3.6475 29 1 6.2380 -1.1775 -3.6264 30 1 7.6780 -2.5399 -6.7305 31 1 4.7090 -3.0358 0.8007 32 1 3.7402 -2.7319 2.2626 33 1 2.9610 -3.3715 0.7958 34 1 4.3568 0.6746 0.8608 35 1 4.5616 -0.3511 2.3009 36 1 5.5261 -0.6671 0.8387 37 1 2.1923 -0.1708 2.0795 38 1 1.4468 -1.6638 1.4202 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336106110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:48 Heat of formation + Delta-G solvation = -66.118154 kcal Electronic energy + Delta-G solvation = -17910.160451 eV Core-core repulsion = 15172.072094 eV Total energy + Delta-G solvation = -2738.088356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54620 -39.09114 -36.19362 -34.64732 -34.15096 -33.02001 -29.15379 -28.26324 -27.74349 -26.44489 -24.80548 -22.34256 -21.22539 -20.51211 -18.82774 -17.88636 -17.41245 -16.78801 -16.38783 -15.89110 -15.14095 -14.91611 -14.64559 -14.58793 -14.28321 -14.03184 -13.79390 -13.50344 -13.29384 -13.07162 -12.92629 -12.72513 -12.61287 -12.53867 -12.26833 -12.22764 -11.69834 -11.52009 -11.48385 -11.36132 -10.90708 -10.80797 -10.00392 -9.36821 -8.29490 -6.46511 1.42028 1.45503 1.56402 1.78012 2.26336 2.38056 3.05181 3.25083 3.55101 3.68638 3.94715 4.13432 4.20096 4.39971 4.52426 4.62200 4.73199 4.76558 4.79721 4.88365 4.92100 5.00796 5.02643 5.07888 5.17553 5.23682 5.24837 5.35190 5.43307 5.46363 5.53229 5.64964 5.78353 5.85215 6.29154 6.65290 7.22046 7.24665 7.75575 8.83079 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032903 B = 0.005683 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.786191 B = 4926.071388 C = 5550.948216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.084 0.916 4 C 0.093 3.907 5 N -0.632 5.632 6 C 0.706 3.294 7 O -0.640 6.640 8 N -0.726 5.726 9 C 0.288 3.712 10 C -0.556 4.556 11 H 0.081 0.919 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.988 3.012 15 H -0.270 1.270 16 H -0.255 1.255 17 H -0.282 1.282 18 C 0.165 3.835 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.106 4.106 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.400 0.600 28 H -0.017 1.017 29 H -0.017 1.017 30 H 0.269 0.731 31 H 0.029 0.971 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.030 0.970 37 H 0.104 0.896 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.572 5.474 13.465 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.102 0.898 4 C -0.029 4.029 5 N -0.370 5.370 6 C 0.408 3.592 7 O -0.522 6.522 8 N -0.380 5.380 9 C 0.165 3.835 10 C -0.593 4.593 11 H 0.099 0.901 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.811 3.189 15 H -0.195 1.195 16 H -0.179 1.179 17 H -0.208 1.208 18 C 0.081 3.919 19 C -0.210 4.210 20 C -0.210 4.210 21 C -0.143 4.143 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.235 0.765 28 H 0.001 0.999 29 H 0.001 0.999 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.049 0.951 37 H 0.123 0.877 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.554 5.146 13.651 21.325 hybrid contribution 0.433 -0.146 -1.252 1.333 sum -15.121 5.000 12.399 20.184 Atomic orbital electron populations 1.21671 0.91687 1.02813 1.03003 1.22302 0.97435 0.98715 0.92853 0.89810 1.22618 0.82403 0.98790 0.99075 1.47788 1.11744 1.71032 1.06449 1.15867 0.83241 0.78557 0.81545 1.90798 1.27955 1.57139 1.76310 1.45378 1.17251 1.71691 1.03676 1.18375 0.84347 0.92808 0.87973 1.21572 0.99906 1.47603 0.90260 0.90068 1.26091 0.94476 0.93838 1.05131 1.70152 1.06607 1.45452 1.34731 0.85115 0.78021 0.79102 0.76701 1.19486 1.17916 1.20787 1.21107 0.97490 0.95510 0.77795 1.22115 1.00949 0.95767 1.02147 1.22120 0.98223 0.98740 1.01896 1.22830 0.92170 1.00890 0.98461 0.91893 0.90638 0.91923 0.91183 0.90772 0.76504 0.99908 0.99894 0.92192 0.95224 0.89231 0.92563 0.92673 0.89259 0.95118 0.87731 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.29 71.98 0.67 -0.81 16 2 C -0.09 -1.54 3.64 -9.40 -0.03 -1.57 16 3 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 4 C 0.09 2.22 6.04 86.86 0.52 2.74 16 5 N -0.63 -20.97 2.82 -782.93 -2.21 -23.18 16 6 C 0.71 32.29 8.06 179.05 1.44 33.73 16 7 O -0.64 -34.93 13.95 -3.96 -0.06 -34.99 16 8 N -0.73 -34.20 5.51 -482.30 -2.66 -36.86 16 9 C 0.29 16.84 5.43 85.63 0.46 17.30 16 10 C -0.56 -31.46 9.28 25.60 0.24 -31.22 16 11 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 12 C 0.00 0.24 5.46 84.66 0.46 0.70 16 13 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 14 Si 0.99 43.16 29.54 68.60 2.03 45.19 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 C 0.17 4.42 0.83 3.95 0.00 4.42 16 19 C -0.15 -4.21 8.42 71.98 0.61 -3.60 16 20 C -0.15 -4.23 8.37 71.98 0.60 -3.63 16 21 C -0.11 -1.73 5.49 31.78 0.17 -1.55 16 22 H 0.06 0.66 8.11 -2.38 -0.02 0.64 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 1.68 7.30 -2.39 -0.02 1.66 16 26 H 0.07 1.62 8.04 -2.39 -0.02 1.60 16 27 H 0.40 16.06 6.80 -92.71 -0.63 15.43 16 28 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 29 H -0.02 -1.11 8.14 -2.39 -0.02 -1.12 16 30 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.03 1.08 6.89 -2.39 -0.02 1.06 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 36 H 0.03 1.13 6.73 -2.39 -0.02 1.11 16 37 H 0.10 1.26 7.83 -2.38 -0.02 1.25 16 38 H 0.09 1.27 7.71 -2.39 -0.02 1.25 16 Total: -1.00 -75.47 305.32 2.94 -72.53 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.40 Total: 18.08 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 5.15 Total: 16.52 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.58 Total: -117.33 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.06 Total: -34.99 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -75.47 2.94 -72.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336106110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.409 kcal (2) G-P(sol) polarization free energy of solvation -75.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds