Wall clock time and date at job start Sun Mar 29 2020 22:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.42131 * 2 1 4 4 C 1.54904 * 110.37224 * 237.68801 * 2 1 3 5 5 C 1.55141 * 101.65055 * 204.09925 * 4 2 1 6 6 C 1.54321 * 103.01962 * 35.65384 * 5 4 2 7 7 C 1.53001 * 109.88922 * 97.12089 * 6 5 4 8 8 C 1.52997 * 109.88811 * 218.14784 * 6 5 4 9 9 N 1.47439 * 107.23286 * 337.71515 * 6 5 4 10 10 C 1.46893 * 111.00177 * 236.74276 * 9 6 5 11 11 C 1.50699 * 109.47129 * 283.46485 * 10 9 6 12 12 O 1.21294 * 119.99791 * 353.86727 * 11 10 9 13 13 N 1.34779 * 119.99922 * 173.86751 * 11 10 9 14 14 C 1.37098 * 119.99684 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00351 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99746 * 180.02562 * 14 13 11 17 17 N 1.31407 * 119.99842 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99977 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47103 * 59.99360 * 18 16 14 20 20 H 1.48494 * 109.47077 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46859 * 299.99849 * 18 16 14 22 22 H 1.09000 * 109.47221 * 180.64665 * 1 2 3 23 23 H 1.08990 * 109.47127 * 300.65021 * 1 2 3 24 24 H 1.09006 * 109.46821 * 60.65160 * 1 2 3 25 25 H 1.09005 * 110.99399 * 322.18683 * 4 2 1 26 26 H 1.08995 * 110.99444 * 85.97186 * 4 2 1 27 27 H 1.09001 * 110.70772 * 154.03643 * 5 4 2 28 28 H 1.09001 * 110.71179 * 277.26889 * 5 4 2 29 29 H 1.09003 * 109.47280 * 61.45177 * 7 6 5 30 30 H 1.08992 * 109.47371 * 181.45718 * 7 6 5 31 31 H 1.09000 * 109.47164 * 301.45377 * 7 6 5 32 32 H 1.08991 * 109.47215 * 56.98052 * 8 6 5 33 33 H 1.09003 * 109.47133 * 176.98413 * 8 6 5 34 34 H 1.09002 * 109.46820 * 296.97891 * 8 6 5 35 35 H 1.09001 * 109.47290 * 43.46793 * 10 9 6 36 36 H 1.09001 * 109.47649 * 163.46619 * 10 9 6 37 37 H 0.96991 * 120.00302 * 359.97438 * 13 11 10 38 38 H 0.97009 * 119.99538 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0693 -0.7762 -1.2273 5 6 3.4786 -1.1995 -0.7358 6 6 3.2536 -1.4807 0.7648 7 6 3.0458 -2.9800 0.9880 8 6 4.4600 -0.9968 1.5717 9 7 2.0448 -0.7408 1.1713 10 6 2.3357 0.1717 2.2851 11 6 2.4413 -0.6160 3.5654 12 8 2.1803 -1.8005 3.5720 13 7 2.8258 -0.0044 4.7032 14 6 2.9224 -0.7211 5.8679 15 1 2.6900 -1.7758 5.8738 16 6 3.3183 -0.0904 7.0410 17 7 3.6006 1.1930 7.0339 18 14 3.4493 -1.0669 8.6281 19 1 4.4397 -2.1599 8.4565 20 1 3.8885 -0.1694 9.7266 21 1 2.1241 -1.6477 8.9627 22 1 -0.3634 -1.0276 0.0116 23 1 -0.3633 0.5238 0.8840 24 1 -0.3633 0.5037 -0.8958 25 1 1.4515 -1.6488 -1.4397 26 1 2.1382 -0.1273 -2.1003 27 1 3.8120 -2.1003 -1.2509 28 1 4.1942 -0.3888 -0.8729 29 1 3.9378 -3.5213 0.6725 30 1 2.8619 -3.1679 2.0457 31 1 2.1898 -3.3190 0.4046 32 1 4.6233 0.0637 1.3805 33 1 4.2714 -1.1497 2.6343 34 1 5.3449 -1.5599 1.2751 35 1 3.2778 0.6865 2.0964 36 1 1.5331 0.9038 2.3742 37 1 3.0349 0.9427 4.6979 38 1 3.8774 1.6332 7.8529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336304753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:31 Heat of formation + Delta-G solvation = -30.160850 kcal Electronic energy + Delta-G solvation = -18371.064307 eV Core-core repulsion = 15634.535176 eV Total energy + Delta-G solvation = -2736.529131 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.98388 -37.57049 -33.87403 -33.15892 -31.98198 -31.04550 -28.35717 -27.13264 -26.03318 -23.96420 -23.34605 -20.49297 -19.44024 -18.24496 -17.62993 -15.97201 -15.79471 -15.34294 -14.48853 -14.15990 -13.84236 -13.52771 -13.26847 -13.18486 -12.70699 -12.18000 -12.12559 -11.83149 -11.71193 -11.43989 -11.31606 -11.09201 -11.06126 -10.95633 -10.63941 -10.45999 -10.40529 -10.35943 -10.15183 -10.07008 -9.38689 -8.28773 -7.88080 -7.71808 -6.35173 -3.75497 3.23820 3.28850 3.33349 4.00880 4.03767 4.28636 4.76483 4.80256 5.05731 5.25975 5.29880 5.35661 5.49840 5.54768 5.62553 5.77205 5.79242 5.84876 5.90593 5.97328 5.99743 6.06596 6.13946 6.27629 6.33014 6.35747 6.42493 6.50676 6.53994 6.71453 7.09711 7.48447 7.54795 7.60959 8.13921 8.71481 9.26241 9.63325 10.17144 10.82863 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039215 B = 0.006184 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.843557 B = 4526.436485 C = 4733.882769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 H 0.049 0.951 4 C -0.122 4.122 5 C -0.136 4.136 6 C 0.108 3.892 7 C -0.129 4.129 8 C -0.170 4.170 9 N -0.492 5.492 10 C 0.031 3.969 11 C 0.451 3.549 12 O -0.570 6.570 13 N -0.571 5.571 14 C -0.296 4.296 15 H 0.102 0.898 16 C 0.021 3.979 17 N -0.905 5.905 18 Si 0.929 3.071 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.390 0.610 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.577 0.073 -13.915 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.042 4.042 3 H 0.067 0.933 4 C -0.160 4.160 5 C -0.175 4.175 6 C 0.019 3.981 7 C -0.187 4.187 8 C -0.228 4.228 9 N -0.216 5.216 10 C -0.101 4.101 11 C 0.237 3.763 12 O -0.453 6.453 13 N -0.209 5.209 14 C -0.426 4.426 15 H 0.119 0.881 16 C -0.180 4.180 17 N -0.547 5.547 18 Si 0.756 3.244 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.223 0.777 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.074 -0.958 -13.558 13.634 hybrid contribution 0.857 0.904 0.633 1.397 sum -0.217 -0.053 -12.925 12.927 Atomic orbital electron populations 1.21680 0.94193 1.02407 1.00772 1.22568 0.96018 0.95750 0.89913 0.93276 1.22703 0.96351 1.00144 0.96820 1.22948 0.96953 1.01280 0.96281 1.21576 0.88513 0.95912 0.92128 1.21810 0.99276 0.92723 1.04866 1.22489 0.97510 0.99867 1.02886 1.63220 1.28870 1.24754 1.04762 1.22190 1.00931 0.94898 0.92074 1.19688 0.83638 0.88537 0.84427 1.90467 1.53838 1.15565 1.85466 1.41884 1.60003 1.11710 1.07255 1.19626 1.42487 0.95311 0.85127 0.88066 1.25224 0.97432 0.95854 0.99505 1.69608 1.46615 1.09197 1.29236 0.85952 0.78826 0.78962 0.80668 1.20012 1.21069 1.19980 0.91922 0.92695 0.92967 0.90722 0.91423 0.91039 0.91817 0.94166 0.89353 0.93423 0.93078 0.90001 0.92702 0.92384 0.90119 0.77676 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.59 37.16 0.36 -1.34 16 2 C 0.07 0.91 2.95 -66.19 -0.20 0.71 16 3 H 0.05 0.65 7.81 -51.93 -0.41 0.24 16 4 C -0.12 -1.45 6.50 -24.59 -0.16 -1.61 16 5 C -0.14 -1.73 6.01 -24.91 -0.15 -1.88 16 6 C 0.11 1.74 0.81 -130.61 -0.11 1.64 16 7 C -0.13 -2.20 8.54 37.16 0.32 -1.88 16 8 C -0.17 -2.86 7.01 37.16 0.26 -2.60 16 9 N -0.49 -8.47 3.98 -209.40 -0.83 -9.30 16 10 C 0.03 0.57 4.85 -4.98 -0.02 0.55 16 11 C 0.45 10.67 5.41 -10.99 -0.06 10.61 16 12 O -0.57 -15.18 13.16 5.55 0.07 -15.10 16 13 N -0.57 -14.55 5.29 -10.96 -0.06 -14.61 16 14 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 16 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 17 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 18 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.88 8.06 -51.93 -0.42 0.47 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.83 7.83 -51.93 -0.41 0.43 16 28 H 0.06 0.76 7.83 -51.93 -0.41 0.36 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.85 5.89 -51.93 -0.31 1.55 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.79 6.57 -51.93 -0.34 0.45 16 33 H 0.08 1.69 5.11 -51.93 -0.27 1.43 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.01 5.46 -51.93 -0.28 0.72 16 36 H 0.08 1.41 7.98 -51.93 -0.41 0.99 16 37 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 296.09 15.07 4.46 4.46 Total: -1.00 -29.93 296.09 -6.70 -36.62 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.04 Total: 9.57 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 0.00 Total: -3.77 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.17 Total: -48.08 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.07 Total: -15.10 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.93 -6.70 -36.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336304753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.463 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds