Wall clock time and date at job start Sun Mar 29 2020 23:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.88806 * 2 1 4 4 C 1.55131 * 110.90519 * 124.09802 * 2 1 3 5 5 N 1.47429 * 104.72085 * 155.27346 * 4 2 1 6 6 C 1.34775 * 125.64913 * 155.81340 * 5 4 2 7 7 O 1.21583 * 120.00144 * 179.69447 * 6 5 4 8 8 N 1.34777 * 119.99585 * 359.69312 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72218 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99720 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00513 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99651 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47115 * 89.99974 * 15 13 11 17 17 H 1.48509 * 109.46780 * 210.00159 * 15 13 11 18 18 H 1.48497 * 109.46888 * 329.99916 * 15 13 11 19 19 C 1.47023 * 108.70537 * 335.55317 * 5 4 2 20 20 C 1.54328 * 107.26903 * 1.28750 * 19 5 4 21 21 H 1.08997 * 110.72202 * 140.73421 * 20 19 5 22 22 C 1.52999 * 110.71698 * 263.82944 * 20 19 5 23 23 H 1.09001 * 109.46746 * 183.87763 * 1 2 3 24 24 H 1.08993 * 109.46904 * 303.88054 * 1 2 3 25 25 H 1.08999 * 109.47050 * 63.88103 * 1 2 3 26 26 H 1.08997 * 110.49832 * 36.43264 * 4 2 1 27 27 H 1.08995 * 110.33972 * 274.03510 * 4 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 29 29 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 30 30 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 31 31 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 32 32 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 33 33 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 34 34 H 1.09005 * 109.88380 * 120.69935 * 19 5 4 35 35 H 1.08994 * 109.88427 * 241.86763 * 19 5 4 36 36 H 1.08997 * 109.47190 * 58.54769 * 22 20 19 37 37 H 1.09004 * 109.47097 * 178.54660 * 22 20 19 38 38 H 1.09000 * 109.47450 * 298.54419 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0836 -0.8124 1.2000 5 7 3.4271 -1.2434 0.7728 6 6 4.4477 -1.5623 1.5933 7 8 5.5154 -1.9116 1.1282 8 7 4.2847 -1.4938 2.9294 9 6 5.3921 -1.8462 3.8214 10 6 4.9445 -1.6906 5.2762 11 6 6.0839 -2.0526 6.1938 12 1 7.0323 -2.3629 5.7806 13 6 5.9156 -1.9874 7.5607 14 7 4.7606 -1.6100 8.0638 15 14 7.3277 -2.4367 8.6981 16 1 8.1338 -1.2241 8.9892 17 1 6.7858 -2.9872 9.9664 18 1 8.1859 -3.4561 8.0427 19 6 3.4675 -1.2739 -0.6966 20 6 2.0862 -0.8074 -1.2026 21 1 2.1920 -0.1717 -2.0816 22 6 1.1887 -2.0078 -1.5101 23 1 -0.3633 -1.0253 0.0695 24 1 -0.3633 0.5729 0.8531 25 1 -0.3633 0.4524 -0.9227 26 1 1.4524 -1.6787 1.3981 27 1 2.1516 -0.1810 2.0859 28 1 3.4328 -1.2154 3.3005 29 1 5.6892 -2.8794 3.6412 30 1 6.2379 -1.1861 3.6290 31 1 4.6475 -0.6575 5.4564 32 1 4.0988 -2.3508 5.4688 33 1 4.6423 -1.5638 9.0255 34 1 4.2426 -0.5993 -1.0602 35 1 3.6651 -2.2889 -1.0410 36 1 1.0717 -2.6136 -0.6115 37 1 0.2115 -1.6557 -1.8406 38 1 1.6435 -2.6093 -2.2972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336389152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:22 Heat of formation + Delta-G solvation = -48.154174 kcal Electronic energy + Delta-G solvation = -17270.769533 eV Core-core repulsion = 14533.460153 eV Total energy + Delta-G solvation = -2737.309380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20187 -38.11421 -34.78033 -33.36363 -32.68848 -31.04587 -29.47118 -26.75851 -26.41500 -24.54346 -22.57395 -20.97029 -19.64896 -19.42554 -17.80221 -16.58466 -16.23172 -15.41507 -14.91102 -14.53421 -14.45268 -13.98552 -13.63429 -13.41735 -13.11553 -12.78643 -12.59321 -12.24715 -12.14568 -12.07021 -11.81378 -11.17229 -11.01952 -10.98985 -10.74053 -10.67093 -10.60683 -10.28794 -9.86917 -9.52543 -9.23614 -8.67128 -8.42835 -8.12052 -6.07072 -4.09564 2.94684 3.31412 3.37338 3.42194 3.61351 4.19443 4.29346 4.42307 4.54222 4.66481 4.94325 5.11147 5.18964 5.24857 5.30062 5.36766 5.46576 5.57746 5.62923 5.68379 5.77001 5.83796 5.95345 5.96384 6.16767 6.24715 6.43350 6.49485 6.80406 7.05108 7.35573 7.59445 7.65989 7.92232 8.28416 8.43461 8.95349 9.04449 9.55078 11.04667 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045750 B = 0.004226 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.874936 B = 6623.380464 C = 7072.160644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.085 0.915 4 C 0.104 3.896 5 N -0.642 5.642 6 C 0.716 3.284 7 O -0.596 6.596 8 N -0.737 5.737 9 C 0.140 3.860 10 C 0.013 3.987 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.132 3.868 20 C -0.101 4.101 21 H 0.087 0.913 22 C -0.144 4.144 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.392 0.608 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.078 3.160 -17.028 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.020 4.020 5 N -0.382 5.382 6 C 0.418 3.582 7 O -0.475 6.475 8 N -0.391 5.391 9 C 0.017 3.983 10 C -0.024 4.024 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C 0.008 3.992 20 C -0.120 4.120 21 H 0.106 0.894 22 C -0.201 4.201 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.226 0.774 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.261 2.886 -17.111 20.159 hybrid contribution 0.275 -0.047 0.949 0.989 sum -9.986 2.839 -16.161 19.209 Atomic orbital electron populations 1.21757 0.93832 1.02417 1.02001 1.22401 0.96135 0.99167 0.94215 0.89680 1.22375 0.83898 0.98036 0.97677 1.47556 1.11692 1.72669 1.06263 1.15584 0.82643 0.78580 0.81423 1.90885 1.25622 1.55251 1.75749 1.45553 1.17684 1.72064 1.03753 1.21603 0.87164 0.99294 0.90248 1.19323 0.97551 0.97733 0.87814 1.21059 0.98258 1.45645 0.90919 0.92199 1.24992 0.95879 0.95104 0.98297 1.69957 1.23419 1.47639 1.12388 0.86510 0.82217 0.78784 0.80034 1.20569 1.21187 1.19704 1.21770 0.96620 1.01325 0.79472 1.22262 0.94382 0.97350 0.98047 0.89445 1.21858 0.99293 0.97232 1.01749 0.91924 0.92284 0.92215 0.91519 0.90858 0.77416 0.92782 0.92783 0.96007 0.95991 0.92883 0.91866 0.91765 0.92299 0.92076 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.28 37.16 0.31 -0.63 16 2 C -0.10 -0.85 3.52 -88.35 -0.31 -1.16 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.10 1.14 5.73 -2.41 -0.01 1.13 16 5 N -0.64 -9.42 3.32 -176.09 -0.59 -10.00 16 6 C 0.72 13.81 8.49 -86.92 -0.74 13.08 16 7 O -0.60 -13.83 16.67 5.29 0.09 -13.74 16 8 N -0.74 -14.11 5.52 -65.22 -0.36 -14.47 16 9 C 0.14 3.14 5.61 -4.04 -0.02 3.12 16 10 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 11 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 12 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 15 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.13 1.61 6.45 -3.06 -0.02 1.59 16 20 C -0.10 -0.86 3.47 -88.78 -0.31 -1.16 16 21 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 22 C -0.14 -1.08 7.86 37.16 0.29 -0.79 16 23 H 0.06 0.41 6.71 -51.93 -0.35 0.06 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.69 7.54 -51.93 -0.39 0.30 16 27 H 0.07 0.80 7.29 -51.93 -0.38 0.42 16 28 H 0.39 6.61 6.95 -40.82 -0.28 6.33 16 29 H 0.05 1.26 8.14 -51.92 -0.42 0.84 16 30 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.82 7.84 -51.93 -0.41 0.41 16 36 H 0.06 0.50 7.30 -51.93 -0.38 0.12 16 37 H 0.06 0.37 7.10 -51.93 -0.37 0.01 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 306.92 15.07 4.63 4.63 Total: -1.00 -32.65 306.92 -8.21 -40.86 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.33 Total: -0.14 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.37 Total: 1.94 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.21 Total: -50.12 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.65 -8.21 -40.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336389152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.297 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds