Wall clock time and date at job start Sun Mar 29 2020 23:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.88806 * 2 1 4 4 C 1.55131 * 110.90519 * 124.09802 * 2 1 3 5 5 N 1.47429 * 104.72085 * 155.27346 * 4 2 1 6 6 C 1.34775 * 125.64913 * 155.81340 * 5 4 2 7 7 O 1.21583 * 120.00144 * 179.69447 * 6 5 4 8 8 N 1.34777 * 119.99585 * 359.69312 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72218 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99720 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00513 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99651 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47115 * 89.99974 * 15 13 11 17 17 H 1.48509 * 109.46780 * 210.00159 * 15 13 11 18 18 H 1.48497 * 109.46888 * 329.99916 * 15 13 11 19 19 C 1.47023 * 108.70537 * 335.55317 * 5 4 2 20 20 C 1.54328 * 107.26903 * 1.28750 * 19 5 4 21 21 H 1.08997 * 110.72202 * 140.73421 * 20 19 5 22 22 C 1.52999 * 110.71698 * 263.82944 * 20 19 5 23 23 H 1.09001 * 109.46746 * 183.87763 * 1 2 3 24 24 H 1.08993 * 109.46904 * 303.88054 * 1 2 3 25 25 H 1.08999 * 109.47050 * 63.88103 * 1 2 3 26 26 H 1.08997 * 110.49832 * 36.43264 * 4 2 1 27 27 H 1.08995 * 110.33972 * 274.03510 * 4 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 29 29 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 30 30 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 31 31 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 32 32 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 33 33 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 34 34 H 1.09005 * 109.88380 * 120.69935 * 19 5 4 35 35 H 1.08994 * 109.88427 * 241.86763 * 19 5 4 36 36 H 1.08997 * 109.47190 * 58.54769 * 22 20 19 37 37 H 1.09004 * 109.47097 * 178.54660 * 22 20 19 38 38 H 1.09000 * 109.47450 * 298.54419 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0836 -0.8124 1.2000 5 7 3.4271 -1.2434 0.7728 6 6 4.4477 -1.5623 1.5933 7 8 5.5154 -1.9116 1.1282 8 7 4.2847 -1.4938 2.9294 9 6 5.3921 -1.8462 3.8214 10 6 4.9445 -1.6906 5.2762 11 6 6.0839 -2.0526 6.1938 12 1 7.0323 -2.3629 5.7806 13 6 5.9156 -1.9874 7.5607 14 7 4.7606 -1.6100 8.0638 15 14 7.3277 -2.4367 8.6981 16 1 8.1338 -1.2241 8.9892 17 1 6.7858 -2.9872 9.9664 18 1 8.1859 -3.4561 8.0427 19 6 3.4675 -1.2739 -0.6966 20 6 2.0862 -0.8074 -1.2026 21 1 2.1920 -0.1717 -2.0816 22 6 1.1887 -2.0078 -1.5101 23 1 -0.3633 -1.0253 0.0695 24 1 -0.3633 0.5729 0.8531 25 1 -0.3633 0.4524 -0.9227 26 1 1.4524 -1.6787 1.3981 27 1 2.1516 -0.1810 2.0859 28 1 3.4328 -1.2154 3.3005 29 1 5.6892 -2.8794 3.6412 30 1 6.2379 -1.1861 3.6290 31 1 4.6475 -0.6575 5.4564 32 1 4.0988 -2.3508 5.4688 33 1 4.6423 -1.5638 9.0255 34 1 4.2426 -0.5993 -1.0602 35 1 3.6651 -2.2889 -1.0410 36 1 1.0717 -2.6136 -0.6115 37 1 0.2115 -1.6557 -1.8406 38 1 1.6435 -2.6093 -2.2972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336389152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:22 Heat of formation + Delta-G solvation = -69.380994 kcal Electronic energy + Delta-G solvation = -17271.689997 eV Core-core repulsion = 14533.460153 eV Total energy + Delta-G solvation = -2738.229844 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43748 -39.33200 -36.61049 -34.92234 -34.25103 -31.94051 -31.21589 -27.87727 -27.22391 -26.34562 -23.66497 -22.83423 -21.05898 -20.19683 -19.14797 -18.48709 -17.50773 -16.87630 -16.51231 -16.23603 -15.50473 -15.29162 -14.98146 -14.55576 -14.30650 -14.21307 -13.73843 -13.48479 -13.20834 -13.00411 -12.88532 -12.76894 -12.52327 -12.46391 -12.25678 -11.77579 -11.66336 -11.50929 -11.42217 -11.33357 -11.20508 -10.61183 -10.22103 -9.49588 -8.24489 -6.35126 1.41769 1.42747 1.53727 1.62580 2.08147 2.40844 3.05530 3.10258 3.48734 3.59259 3.91496 4.18653 4.31563 4.42777 4.48108 4.54443 4.57736 4.63297 4.70129 4.82697 4.84917 4.92881 5.00528 5.10106 5.16802 5.25474 5.30317 5.32351 5.42958 5.50100 5.56419 5.56862 5.77844 6.02962 6.16165 6.77462 6.95513 7.34230 7.51443 8.87600 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045750 B = 0.004226 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.874936 B = 6623.380464 C = 7072.160644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.086 0.914 4 C 0.094 3.906 5 N -0.637 5.637 6 C 0.710 3.290 7 O -0.641 6.641 8 N -0.732 5.732 9 C 0.160 3.840 10 C 0.026 3.974 11 C -0.548 4.548 12 H 0.059 0.941 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.966 3.034 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.122 3.878 20 C -0.089 4.089 21 H 0.110 0.890 22 C -0.142 4.142 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.404 0.596 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.266 0.734 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 3.557 -17.715 21.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.105 0.895 4 C -0.028 4.028 5 N -0.375 5.375 6 C 0.412 3.588 7 O -0.524 6.524 8 N -0.387 5.387 9 C 0.036 3.964 10 C -0.012 4.012 11 C -0.586 4.586 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.566 5.566 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.001 4.001 20 C -0.108 4.108 21 H 0.128 0.872 22 C -0.199 4.199 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.240 0.760 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.374 3.303 -17.828 21.404 hybrid contribution 0.544 -0.155 1.114 1.249 sum -10.831 3.148 -16.714 20.164 Atomic orbital electron populations 1.21741 0.91886 1.02894 1.03023 1.22397 0.97529 0.98606 0.92524 0.89514 1.22699 0.82075 0.98929 0.99134 1.47606 1.11910 1.70961 1.07036 1.15723 0.83093 0.78513 0.81454 1.90842 1.27803 1.57277 1.76443 1.45255 1.17363 1.72292 1.03760 1.21112 0.87733 0.98384 0.89209 1.19116 0.96463 0.96322 0.89280 1.21452 0.98976 1.46204 0.91996 0.92302 1.25868 0.98582 0.94726 0.99855 1.70057 1.25301 1.48188 1.13029 0.85426 0.78898 0.78770 0.77841 1.19705 1.20379 1.19102 1.22043 0.99155 1.00938 0.77918 1.22270 0.91915 0.98003 0.98603 0.87206 1.21854 1.00102 0.96624 1.01317 0.91618 0.92028 0.90586 0.90564 0.90838 0.76036 0.93871 0.93826 0.97327 0.97330 0.92485 0.92615 0.92611 0.93519 0.89970 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.28 71.98 0.60 -0.77 16 2 C -0.09 -1.32 3.52 -9.32 -0.03 -1.35 16 3 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 4 C 0.09 1.94 5.73 86.93 0.50 2.44 16 5 N -0.64 -18.49 3.32 -829.30 -2.76 -21.25 16 6 C 0.71 27.84 8.49 179.05 1.52 29.36 16 7 O -0.64 -30.53 16.67 -3.98 -0.07 -30.60 16 8 N -0.73 -28.49 5.52 -478.53 -2.64 -31.13 16 9 C 0.16 7.37 5.61 86.38 0.48 7.86 16 10 C 0.03 1.34 5.09 29.85 0.15 1.49 16 11 C -0.55 -31.30 9.11 25.60 0.23 -31.07 16 12 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 13 C 0.01 0.48 5.46 84.65 0.46 0.95 16 14 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 15 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 C 0.12 2.90 6.45 86.73 0.56 3.46 16 20 C -0.09 -1.29 3.47 -9.60 -0.03 -1.32 16 21 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 22 C -0.14 -1.75 7.86 71.98 0.57 -1.19 16 23 H 0.06 0.64 6.71 -2.39 -0.02 0.62 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.08 1.47 7.54 -2.39 -0.02 1.45 16 27 H 0.07 1.52 7.29 -2.39 -0.02 1.51 16 28 H 0.40 13.70 6.95 -92.71 -0.64 13.05 16 29 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.01 0.45 8.14 -2.38 -0.02 0.44 16 33 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 34 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.06 1.41 7.84 -2.39 -0.02 1.39 16 36 H 0.05 0.70 7.30 -2.39 -0.02 0.68 16 37 H 0.08 0.70 7.10 -2.38 -0.02 0.68 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -70.46 306.92 2.24 -68.23 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.38 Total: 13.24 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.00 Total: 9.86 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -5.11 Total: -106.85 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.07 Total: -30.60 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.46 2.24 -68.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336389152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.154 kcal (2) G-P(sol) polarization free energy of solvation -70.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds