Wall clock time and date at job start Sun Mar 29 2020 22:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.40884 * 2 1 4 4 C 1.54906 * 110.36969 * 237.70554 * 2 1 3 5 5 C 1.55156 * 101.61451 * 204.16986 * 4 2 1 6 6 H 1.09006 * 110.71879 * 276.93547 * 5 4 2 7 7 C 1.53005 * 110.71903 * 153.84569 * 5 4 2 8 8 C 1.54315 * 102.94436 * 35.48113 * 5 4 2 9 9 N 1.47017 * 107.27451 * 337.80810 * 8 5 4 10 10 C 1.34783 * 125.65268 * 178.91166 * 9 8 5 11 11 O 1.21589 * 119.99847 * 180.02562 * 10 9 8 12 12 N 1.34768 * 119.99508 * 0.02562 * 10 9 8 13 13 C 1.46508 * 119.99696 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47050 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.46870 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00185 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99826 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00050 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99972 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46851 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47340 * 120.00012 * 19 17 15 22 22 H 1.48493 * 109.47093 * 240.00427 * 19 17 15 23 23 H 1.08998 * 109.46676 * 182.29688 * 1 2 3 24 24 H 1.09000 * 109.47559 * 302.29620 * 1 2 3 25 25 H 1.09001 * 109.47084 * 62.30155 * 1 2 3 26 26 H 1.09002 * 111.00655 * 86.07386 * 4 2 1 27 27 H 1.09002 * 111.00329 * 322.26313 * 4 2 1 28 28 H 1.08999 * 109.46995 * 59.99646 * 7 5 4 29 29 H 1.09000 * 109.46730 * 179.97438 * 7 5 4 30 30 H 1.08996 * 109.47047 * 299.99668 * 7 5 4 31 31 H 1.08998 * 109.88341 * 97.22742 * 8 5 4 32 32 H 1.09007 * 109.88217 * 218.38982 * 8 5 4 33 33 H 0.96997 * 120.00987 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.47206 * 300.00129 * 13 12 10 35 35 H 1.08999 * 109.46828 * 59.99935 * 13 12 10 36 36 H 1.08996 * 109.47022 * 299.99712 * 14 13 12 37 37 H 1.09001 * 109.46879 * 60.00094 * 14 13 12 38 38 H 0.97001 * 120.00553 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0217 0.0000 4 6 2.0692 -0.7759 -1.2276 5 6 3.4778 -1.2005 -0.7347 6 1 4.1956 -0.3924 -0.8759 7 6 3.9439 -2.4677 -1.4543 8 6 3.2499 -1.4774 0.7662 9 7 2.0442 -0.7385 1.1683 10 6 1.4981 -0.7371 2.4006 11 8 0.4948 -0.0862 2.6202 12 7 2.0642 -1.4571 3.3892 13 6 1.4703 -1.4560 4.7285 14 6 2.3011 -2.3456 5.6555 15 6 1.6906 -2.3440 7.0333 16 1 0.7989 -1.7666 7.2282 17 6 2.2697 -3.0805 8.0448 18 7 3.3551 -3.7840 7.8074 19 14 1.5125 -3.0791 9.7525 20 1 0.3048 -2.2150 9.7577 21 1 1.1308 -4.4647 10.1259 22 1 2.4996 -2.5568 10.7312 23 1 -0.3632 -1.0268 0.0412 24 1 -0.3634 0.5491 0.8687 25 1 -0.3633 0.4777 -0.9099 26 1 2.1399 -0.1264 -2.1001 27 1 1.4508 -1.6477 -1.4412 28 1 3.9878 -2.2809 -2.5273 29 1 4.9338 -2.7471 -1.0936 30 1 3.2422 -3.2776 -1.2550 31 1 3.1014 -2.5451 0.9278 32 1 4.1075 -1.1290 1.3419 33 1 2.8648 -1.9760 3.2142 34 1 1.4560 -0.4384 5.1189 35 1 0.4511 -1.8387 4.6743 36 1 2.3158 -3.3633 5.2654 37 1 3.3201 -1.9624 5.7096 38 1 3.7629 -4.3019 8.5191 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336390024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:07 Heat of formation + Delta-G solvation = -47.677496 kcal Electronic energy + Delta-G solvation = -17377.142201 eV Core-core repulsion = 14639.853492 eV Total energy + Delta-G solvation = -2737.288709 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.18846 -37.77543 -34.83407 -32.97891 -32.90018 -31.56616 -29.18088 -27.11907 -25.71320 -24.61188 -22.06251 -20.86724 -20.51497 -19.34608 -17.49489 -16.74683 -16.25055 -15.16864 -14.76093 -14.50915 -14.28265 -13.78754 -13.61708 -13.43651 -13.12451 -12.82300 -12.47705 -12.26073 -12.16403 -11.80986 -11.65930 -11.16604 -11.02769 -11.01084 -10.90428 -10.67050 -10.58588 -10.28956 -9.68058 -9.44876 -9.18312 -8.63387 -8.43076 -8.11923 -6.07139 -4.09522 2.94737 3.30122 3.37636 3.43285 3.63103 4.24347 4.34406 4.44514 4.59340 4.70938 5.07951 5.14615 5.20922 5.30107 5.39241 5.41419 5.49397 5.59991 5.72621 5.74530 5.79265 5.85307 6.06741 6.20157 6.22312 6.43523 6.44117 6.65416 6.81022 7.08800 7.39100 7.60335 7.66336 7.92411 8.29038 8.46062 8.95943 9.07520 9.55176 11.04667 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039116 B = 0.004526 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.641206 B = 6185.169780 C = 6788.018786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.068 0.932 4 C -0.127 4.127 5 C -0.103 4.103 6 H 0.084 0.916 7 C -0.142 4.142 8 C 0.103 3.897 9 N -0.640 5.640 10 C 0.717 3.283 11 O -0.592 6.592 12 N -0.737 5.737 13 C 0.140 3.860 14 C 0.013 3.987 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.392 0.608 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 3.826 -19.386 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.086 0.914 4 C -0.165 4.165 5 C -0.122 4.122 6 H 0.102 0.898 7 C -0.200 4.200 8 C -0.021 4.021 9 N -0.381 5.381 10 C 0.419 3.581 11 O -0.471 6.471 12 N -0.391 5.391 13 C 0.018 3.982 14 C -0.025 4.025 15 C -0.558 4.558 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.225 0.775 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.968 4.187 -18.997 19.477 hybrid contribution 0.226 -0.412 0.902 1.017 sum 1.194 3.775 -18.095 18.523 Atomic orbital electron populations 1.22130 0.94004 1.02806 1.02917 1.21659 0.95125 0.94820 0.83430 0.91357 1.22975 0.95778 1.00621 0.97106 1.22167 0.97337 0.98907 0.93751 0.89780 1.21762 1.01516 0.96563 1.00124 1.22048 0.88022 0.96747 0.95266 1.47708 1.29485 1.52079 1.08786 1.15589 0.82784 0.80622 0.79074 1.90828 1.26570 1.48164 1.81579 1.45576 1.31683 1.50911 1.10925 1.21587 0.97357 1.00814 0.78488 1.19327 0.95312 0.94404 0.93436 1.21098 1.11706 1.28823 0.94152 0.92155 1.24993 0.94925 0.95202 0.99181 1.69964 1.20061 1.30316 1.33060 0.86460 0.79326 0.77833 0.83975 1.19554 1.20959 1.20952 0.92801 0.89414 0.92652 0.90104 0.90471 0.92236 0.92204 0.92257 0.91571 0.91701 0.77486 0.92807 0.92814 0.96022 0.96015 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.59 37.16 0.32 -1.77 16 2 C 0.15 1.87 3.77 -66.39 -0.25 1.62 16 3 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 4 C -0.13 -1.11 5.95 -24.58 -0.15 -1.25 16 5 C -0.10 -0.86 3.55 -88.79 -0.31 -1.18 16 6 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 7 C -0.14 -0.99 9.16 37.16 0.34 -0.65 16 8 C 0.10 1.15 5.74 -3.07 -0.02 1.13 16 9 N -0.64 -9.35 3.24 -168.69 -0.55 -9.89 16 10 C 0.72 13.56 8.27 -86.92 -0.72 12.84 16 11 O -0.59 -13.08 14.06 5.29 0.07 -13.00 16 12 N -0.74 -14.05 5.52 -65.22 -0.36 -14.41 16 13 C 0.14 3.13 5.61 -4.03 -0.02 3.11 16 14 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 15 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 16 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.40 13.28 55.43 0.74 -25.66 16 19 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 1.42 6.09 -51.93 -0.32 1.11 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.44 8.06 -51.93 -0.42 0.02 16 31 H 0.07 0.73 7.76 -51.93 -0.40 0.33 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.39 6.64 7.46 -40.82 -0.30 6.34 16 34 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -31.95 308.36 -8.30 -40.26 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.47 Total: 0.85 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.36 Total: 0.64 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.17 Total: -49.96 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.07 Total: -13.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.95 -8.30 -40.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336390024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.418 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds