Wall clock time and date at job start Sun Mar 29 2020 22:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.64220 * 2 1 4 4 C 1.55156 * 110.71877 * 236.66701 * 2 1 3 5 5 C 1.55135 * 101.48611 * 205.96832 * 4 2 1 6 6 H 1.08999 * 110.49920 * 278.45248 * 5 4 2 7 7 C 1.53005 * 110.33989 * 156.06004 * 5 4 2 8 8 N 1.47422 * 104.71869 * 37.29832 * 5 4 2 9 9 C 1.34779 * 125.64910 * 155.82056 * 8 5 4 10 10 O 1.21592 * 119.99544 * 359.71251 * 9 8 5 11 11 N 1.34772 * 120.00243 * 179.71496 * 9 8 5 12 12 C 1.46499 * 120.00030 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47299 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47057 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00538 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99661 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00186 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.47025 * 108.70520 * 335.54776 * 8 5 4 23 23 H 1.09001 * 109.47183 * 298.31317 * 1 2 3 24 24 H 1.09007 * 109.47194 * 58.30747 * 1 2 3 25 25 H 1.08994 * 109.47461 * 178.30602 * 1 2 3 26 26 H 1.08998 * 111.01042 * 324.21173 * 4 2 1 27 27 H 1.09004 * 111.00410 * 88.06265 * 4 2 1 28 28 H 1.09000 * 109.46959 * 303.28207 * 7 5 4 29 29 H 1.08996 * 109.47289 * 63.28705 * 7 5 4 30 30 H 1.09004 * 109.46342 * 183.28483 * 7 5 4 31 31 H 0.96997 * 119.99663 * 359.97438 * 11 9 8 32 32 H 1.09002 * 109.47567 * 59.99576 * 12 11 9 33 33 H 1.08998 * 109.46751 * 299.99643 * 12 11 9 34 34 H 1.09002 * 109.46997 * 59.99424 * 13 12 11 35 35 H 1.09000 * 109.46625 * 299.99849 * 13 12 11 36 36 H 0.97001 * 119.99697 * 359.97438 * 17 16 14 37 37 H 1.08995 * 109.87965 * 120.70598 * 22 8 5 38 38 H 1.08998 * 109.88586 * 241.87238 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0788 -0.7975 -1.2125 5 6 3.4665 -1.2467 -0.6841 6 1 4.1947 -0.4428 -0.7922 7 6 3.9389 -2.4981 -1.4271 8 7 3.2444 -1.5496 0.7415 9 6 3.9922 -2.3812 1.4936 10 8 4.9407 -2.9600 0.9999 11 7 3.6887 -2.5711 2.7929 12 6 4.5019 -3.4746 3.6106 13 6 3.9480 -3.5098 5.0364 14 6 4.7842 -4.4397 5.8773 15 1 5.6262 -4.9545 5.4386 16 6 4.4742 -4.6333 7.2068 17 7 3.4492 -4.0060 7.7411 18 14 5.5102 -5.7865 8.2490 19 1 6.6205 -5.0247 8.8755 20 1 6.0699 -6.8613 7.3907 21 1 4.6640 -6.3902 9.3095 22 6 2.0760 -0.7892 1.2086 23 1 -0.3633 0.4874 0.9047 24 1 -0.3634 0.5399 -0.8745 25 1 -0.3634 -1.0271 -0.0304 26 1 1.4451 -1.6559 -1.4349 27 1 2.1849 -0.1552 -2.0868 28 1 3.1935 -3.2863 -1.3214 29 1 4.0736 -2.2645 -2.4831 30 1 4.8861 -2.8348 -1.0057 31 1 2.9323 -2.1090 3.1868 32 1 5.5321 -3.1190 3.6301 33 1 4.4716 -4.4771 3.1838 34 1 2.9177 -3.8652 5.0172 35 1 3.9786 -2.5072 5.4628 36 1 2.9114 -3.4069 7.2000 37 1 1.3129 -1.4732 1.5799 38 1 2.3740 -0.0991 1.9979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336390025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:09 Heat of formation + Delta-G solvation = -50.926474 kcal Electronic energy + Delta-G solvation = -17412.630153 eV Core-core repulsion = 14675.200557 eV Total energy + Delta-G solvation = -2737.429596 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25971 -37.84735 -35.02268 -33.18985 -32.98727 -31.58848 -28.98223 -27.14776 -25.73481 -24.25242 -22.16491 -21.11859 -20.60885 -19.45481 -17.65636 -16.82630 -16.48999 -15.34093 -14.88415 -14.40028 -14.04123 -13.77500 -13.70607 -13.53347 -13.21255 -12.94206 -12.57213 -12.20973 -12.14985 -11.85306 -11.73230 -11.56830 -11.07540 -10.97326 -10.93562 -10.71343 -10.40484 -10.15216 -9.94286 -9.52957 -8.70585 -8.67417 -8.39482 -8.20977 -6.42437 -4.11888 2.87524 3.43973 3.47465 3.55087 3.63515 4.18724 4.29126 4.50268 4.55242 4.64500 5.03095 5.09828 5.16109 5.34618 5.35986 5.36161 5.45157 5.53693 5.68145 5.70446 5.75216 5.80786 6.01794 6.10927 6.15434 6.29757 6.34412 6.59989 6.65850 6.95533 7.23316 7.38645 7.41098 8.10707 8.35068 8.40830 8.81781 8.98572 9.60006 10.98734 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039167 B = 0.004545 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.708441 B = 6159.647821 C = 6762.240311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.153 3.847 6 H 0.069 0.931 7 C -0.165 4.165 8 N -0.640 5.640 9 C 0.718 3.282 10 O -0.591 6.591 11 N -0.739 5.739 12 C 0.148 3.852 13 C 0.000 4.000 14 C -0.601 4.601 15 H 0.054 0.946 16 C 0.017 3.983 17 N -0.912 5.912 18 Si 1.074 2.926 19 H -0.287 1.287 20 H -0.287 1.287 21 H -0.284 1.284 22 C 0.102 3.898 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.391 0.609 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.268 0.732 37 H 0.066 0.934 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 9.158 -16.798 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 H 0.103 0.897 4 C -0.164 4.164 5 C 0.050 3.950 6 H 0.087 0.913 7 C -0.222 4.222 8 N -0.380 5.380 9 C 0.420 3.580 10 O -0.470 6.470 11 N -0.393 5.393 12 C 0.025 3.975 13 C -0.037 4.037 14 C -0.639 4.639 15 H 0.072 0.928 16 C -0.187 4.187 17 N -0.548 5.548 18 Si 0.902 3.098 19 H -0.214 1.214 20 H -0.213 1.213 21 H -0.210 1.210 22 C -0.021 4.021 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.224 0.776 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.031 0.969 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.207 8.006 -15.552 18.251 hybrid contribution -0.630 0.984 -1.289 1.740 sum -5.837 8.990 -16.841 19.963 Atomic orbital electron populations 1.21760 0.93799 1.02303 1.02107 1.22168 0.96311 0.99284 0.94401 0.89747 1.23018 0.95854 1.00177 0.97374 1.21714 0.96169 0.97542 0.79617 0.91285 1.22179 1.04337 0.96753 0.98942 1.47686 1.31581 1.47711 1.11026 1.15573 0.81903 0.79271 0.81245 1.90821 1.30928 1.53124 1.72098 1.45580 1.34900 1.50169 1.08640 1.21422 0.93648 0.91318 0.91123 1.19452 0.96814 0.97409 0.90066 1.21914 1.15819 1.28983 0.97213 0.92795 1.25888 0.97707 0.98877 0.96215 1.70775 1.16868 1.27422 1.39685 0.83469 0.75248 0.75611 0.75470 1.21365 1.21322 1.20963 1.22052 0.88228 0.94746 0.97094 0.92190 0.92185 0.92281 0.90418 0.90062 0.92858 0.92580 0.89088 0.77603 0.92620 0.92616 0.96932 0.96933 0.92183 0.91614 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.13 37.15 0.34 -0.64 16 2 C -0.10 -0.85 3.54 -88.79 -0.31 -1.16 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.13 -1.09 5.96 -24.46 -0.15 -1.24 16 5 C 0.15 1.85 3.78 -66.29 -0.25 1.60 16 6 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 7 C -0.16 -2.13 8.71 37.16 0.32 -1.81 16 8 N -0.64 -9.29 3.24 -168.59 -0.55 -9.83 16 9 C 0.72 13.54 8.27 -86.92 -0.72 12.82 16 10 O -0.59 -13.03 13.99 5.28 0.07 -12.96 16 11 N -0.74 -14.05 5.52 -65.23 -0.36 -14.41 16 12 C 0.15 3.33 5.61 -4.04 -0.02 3.31 16 13 C 0.00 0.00 4.40 -27.89 -0.12 -0.12 16 14 C -0.60 -17.19 9.11 -34.44 -0.31 -17.51 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 17 N -0.91 -27.64 13.65 55.43 0.76 -26.88 16 18 Si 1.07 25.39 29.90 -169.99 -5.08 20.30 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.10 1.13 5.74 -3.06 -0.02 1.12 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 26 H 0.08 0.69 7.96 -51.93 -0.41 0.27 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.49 5.88 -51.93 -0.31 1.18 16 31 H 0.39 6.55 7.46 -40.82 -0.30 6.25 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 35 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 36 H 0.27 8.02 7.22 -40.82 -0.29 7.73 16 37 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -32.75 306.98 -8.28 -41.03 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.41 Total: 1.35 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.34 Total: -3.23 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.15 Total: -51.12 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.75 -8.28 -41.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336390025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.893 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds