Wall clock time and date at job start Sun Mar 29 2020 22:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.64220 * 2 1 4 4 C 1.55156 * 110.71877 * 236.66701 * 2 1 3 5 5 C 1.55135 * 101.48611 * 205.96832 * 4 2 1 6 6 H 1.08999 * 110.49920 * 278.45248 * 5 4 2 7 7 C 1.53005 * 110.33989 * 156.06004 * 5 4 2 8 8 N 1.47422 * 104.71869 * 37.29832 * 5 4 2 9 9 C 1.34779 * 125.64910 * 155.82056 * 8 5 4 10 10 O 1.21592 * 119.99544 * 359.71251 * 9 8 5 11 11 N 1.34772 * 120.00243 * 179.71496 * 9 8 5 12 12 C 1.46499 * 120.00030 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47299 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47057 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00538 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99661 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00186 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.47025 * 108.70520 * 335.54776 * 8 5 4 23 23 H 1.09001 * 109.47183 * 298.31317 * 1 2 3 24 24 H 1.09007 * 109.47194 * 58.30747 * 1 2 3 25 25 H 1.08994 * 109.47461 * 178.30602 * 1 2 3 26 26 H 1.08998 * 111.01042 * 324.21173 * 4 2 1 27 27 H 1.09004 * 111.00410 * 88.06265 * 4 2 1 28 28 H 1.09000 * 109.46959 * 303.28207 * 7 5 4 29 29 H 1.08996 * 109.47289 * 63.28705 * 7 5 4 30 30 H 1.09004 * 109.46342 * 183.28483 * 7 5 4 31 31 H 0.96997 * 119.99663 * 359.97438 * 11 9 8 32 32 H 1.09002 * 109.47567 * 59.99576 * 12 11 9 33 33 H 1.08998 * 109.46751 * 299.99643 * 12 11 9 34 34 H 1.09002 * 109.46997 * 59.99424 * 13 12 11 35 35 H 1.09000 * 109.46625 * 299.99849 * 13 12 11 36 36 H 0.97001 * 119.99697 * 359.97438 * 17 16 14 37 37 H 1.08995 * 109.87965 * 120.70598 * 22 8 5 38 38 H 1.08998 * 109.88586 * 241.87238 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0788 -0.7975 -1.2125 5 6 3.4665 -1.2467 -0.6841 6 1 4.1947 -0.4428 -0.7922 7 6 3.9389 -2.4981 -1.4271 8 7 3.2444 -1.5496 0.7415 9 6 3.9922 -2.3812 1.4936 10 8 4.9407 -2.9600 0.9999 11 7 3.6887 -2.5711 2.7929 12 6 4.5019 -3.4746 3.6106 13 6 3.9480 -3.5098 5.0364 14 6 4.7842 -4.4397 5.8773 15 1 5.6262 -4.9545 5.4386 16 6 4.4742 -4.6333 7.2068 17 7 3.4492 -4.0060 7.7411 18 14 5.5102 -5.7865 8.2490 19 1 6.6205 -5.0247 8.8755 20 1 6.0699 -6.8613 7.3907 21 1 4.6640 -6.3902 9.3095 22 6 2.0760 -0.7892 1.2086 23 1 -0.3633 0.4874 0.9047 24 1 -0.3634 0.5399 -0.8745 25 1 -0.3634 -1.0271 -0.0304 26 1 1.4451 -1.6559 -1.4349 27 1 2.1849 -0.1552 -2.0868 28 1 3.1935 -3.2863 -1.3214 29 1 4.0736 -2.2645 -2.4831 30 1 4.8861 -2.8348 -1.0057 31 1 2.9323 -2.1090 3.1868 32 1 5.5321 -3.1190 3.6301 33 1 4.4716 -4.4771 3.1838 34 1 2.9177 -3.8652 5.0172 35 1 3.9786 -2.5072 5.4628 36 1 2.9114 -3.4069 7.2000 37 1 1.3129 -1.4732 1.5799 38 1 2.3740 -0.0991 1.9979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336390025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:08 Heat of formation + Delta-G solvation = -72.233200 kcal Electronic energy + Delta-G solvation = -17413.554081 eV Core-core repulsion = 14675.200557 eV Total energy + Delta-G solvation = -2738.353525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.51137 -39.05868 -36.84018 -35.13041 -33.92443 -32.86276 -30.79108 -27.93956 -26.79906 -26.16522 -23.74022 -22.70852 -21.39747 -20.81667 -19.10412 -18.55383 -17.81651 -16.87633 -16.31615 -15.70692 -15.56285 -15.32299 -15.09799 -14.70940 -14.25012 -14.15981 -13.72749 -13.61402 -13.59986 -13.13254 -12.87454 -12.70138 -12.60103 -12.30815 -12.08358 -11.88690 -11.79883 -11.69338 -11.54358 -11.04324 -10.75286 -10.59204 -10.24645 -9.53752 -8.73711 -6.44499 1.52892 1.58535 1.62467 1.81321 2.06720 2.54842 2.98326 3.12270 3.50193 3.65137 3.86734 4.14197 4.25919 4.31236 4.32410 4.37120 4.57511 4.59967 4.64408 4.69451 4.75526 4.85847 4.99606 5.05093 5.07469 5.11699 5.21508 5.30545 5.31423 5.42038 5.46353 5.56324 5.92458 6.01936 6.12236 6.51510 6.93590 7.35429 7.51033 8.68589 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039167 B = 0.004545 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.708441 B = 6159.647821 C = 6762.240311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.099 0.901 4 C -0.113 4.113 5 C 0.141 3.859 6 H 0.075 0.925 7 C -0.159 4.159 8 N -0.637 5.637 9 C 0.711 3.289 10 O -0.629 6.629 11 N -0.736 5.736 12 C 0.169 3.831 13 C 0.009 3.991 14 C -0.623 4.623 15 H 0.050 0.950 16 C -0.031 4.031 17 N -0.932 5.932 18 Si 1.121 2.879 19 H -0.271 1.271 20 H -0.272 1.272 21 H -0.279 1.279 22 C 0.092 3.908 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.402 0.598 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.258 0.742 37 H 0.066 0.934 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 10.150 -17.832 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.117 0.883 4 C -0.151 4.151 5 C 0.039 3.961 6 H 0.093 0.907 7 C -0.217 4.217 8 N -0.375 5.375 9 C 0.413 3.587 10 O -0.511 6.511 11 N -0.391 5.391 12 C 0.044 3.956 13 C -0.028 4.028 14 C -0.661 4.661 15 H 0.068 0.932 16 C -0.229 4.229 17 N -0.569 5.569 18 Si 0.942 3.058 19 H -0.197 1.197 20 H -0.197 1.197 21 H -0.205 1.205 22 C -0.031 4.031 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.129 0.871 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.237 0.763 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.981 9.053 -16.630 19.857 hybrid contribution -0.435 0.727 -1.043 1.343 sum -6.417 9.779 -17.673 21.193 Atomic orbital electron populations 1.21742 0.92454 1.02281 1.03148 1.22182 0.97224 0.99331 0.92414 0.88253 1.22998 0.93122 1.00662 0.98355 1.22050 0.98754 0.97205 0.78125 0.90705 1.22087 1.01897 0.96938 1.00748 1.47778 1.31501 1.46360 1.11854 1.15738 0.82046 0.79803 0.81102 1.90805 1.32741 1.54799 1.72723 1.45284 1.34972 1.49959 1.08853 1.20902 0.93285 0.91379 0.90012 1.19284 0.95986 0.96230 0.91320 1.22317 1.16156 1.29553 0.98098 0.93173 1.27392 0.97998 0.99657 0.97850 1.70897 1.17868 1.28344 1.39774 0.82880 0.74268 0.74316 0.74358 1.19683 1.19699 1.20478 1.22366 0.86996 0.94835 0.98867 0.91829 0.90466 0.92899 0.90452 0.87071 0.93945 0.89516 0.92914 0.76283 0.93871 0.93936 0.97734 0.97699 0.93241 0.91566 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.13 71.98 0.66 -0.80 16 2 C -0.09 -1.24 3.54 -9.61 -0.03 -1.28 16 3 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.11 -1.59 5.96 32.07 0.19 -1.40 16 5 C 0.14 3.19 3.78 45.55 0.17 3.36 16 6 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 7 C -0.16 -4.03 8.71 71.98 0.63 -3.40 16 8 N -0.64 -18.03 3.24 -805.54 -2.61 -20.64 16 9 C 0.71 27.20 8.27 179.06 1.48 28.68 16 10 O -0.63 -28.62 13.99 -4.00 -0.06 -28.68 16 11 N -0.74 -28.41 5.52 -478.54 -2.64 -31.05 16 12 C 0.17 7.80 5.61 86.38 0.48 8.29 16 13 C 0.01 0.48 4.40 29.85 0.13 0.61 16 14 C -0.62 -36.07 9.11 25.60 0.23 -35.84 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 16 C -0.03 -1.78 5.46 84.65 0.46 -1.32 16 17 N -0.93 -56.83 13.65 21.45 0.29 -56.54 16 18 Si 1.12 50.48 29.90 68.60 2.05 52.53 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C 0.09 1.88 5.74 86.73 0.50 2.38 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.05 0.64 8.13 -2.39 -0.02 0.62 16 26 H 0.08 1.14 7.96 -2.39 -0.02 1.12 16 27 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.77 5.88 -2.39 -0.01 1.75 16 31 H 0.40 13.55 7.46 -92.71 -0.69 12.86 16 32 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.00 0.24 8.01 -2.39 -0.02 0.22 16 35 H 0.00 0.25 8.01 -2.39 -0.02 0.23 16 36 H 0.26 15.73 7.22 -92.71 -0.67 15.06 16 37 H 0.07 1.36 7.82 -2.39 -0.02 1.34 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -71.59 306.98 2.38 -69.21 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.43 Total: 15.87 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 4.90 Total: -0.71 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -4.96 Total: -108.23 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.06 Total: -28.68 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -71.59 2.38 -69.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336390025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.022 kcal (2) G-P(sol) polarization free energy of solvation -71.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds