Wall clock time and date at job start Sun Mar 29 2020 22:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.63669 * 2 1 4 4 C 1.55156 * 110.71830 * 123.13775 * 2 1 3 5 5 C 1.54906 * 101.61451 * 154.02508 * 4 2 1 6 6 N 1.47471 * 104.81210 * 323.04512 * 5 4 2 7 7 C 1.34776 * 125.62717 * 204.04395 * 6 5 4 8 8 O 1.21588 * 119.99713 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00108 * 0.03139 * 7 6 5 10 10 C 1.46497 * 120.00061 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47325 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47088 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47130 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99836 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00072 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99848 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99727 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47238 * 90.00262 * 17 15 13 19 19 H 1.48506 * 109.46991 * 210.00130 * 17 15 13 20 20 H 1.48498 * 109.47525 * 330.00098 * 17 15 13 21 21 C 1.47017 * 108.71970 * 24.07007 * 6 5 4 22 22 H 1.08995 * 109.47470 * 296.85813 * 1 2 3 23 23 H 1.09005 * 109.47386 * 56.86129 * 1 2 3 24 24 H 1.09006 * 109.47368 * 176.85727 * 1 2 3 25 25 H 1.09002 * 111.00677 * 272.12092 * 4 2 1 26 26 H 1.09002 * 111.00564 * 35.93350 * 4 2 1 27 27 H 1.09008 * 110.36753 * 81.85112 * 5 4 2 28 28 H 1.09001 * 110.37094 * 204.16995 * 5 4 2 29 29 H 0.96999 * 120.00163 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.47146 * 300.00090 * 10 9 7 31 31 H 1.09008 * 109.47342 * 59.99571 * 10 9 7 32 32 H 1.08995 * 109.47588 * 300.00106 * 11 10 9 33 33 H 1.09007 * 109.47120 * 60.00514 * 11 10 9 34 34 H 1.08999 * 109.47183 * 299.99765 * 12 11 10 35 35 H 1.08996 * 109.47075 * 60.00528 * 12 11 10 36 36 H 0.96997 * 119.99701 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.88206 * 239.55467 * 21 6 5 38 38 H 1.09004 * 110.01118 * 118.46560 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0789 -0.7933 1.2152 5 6 3.4651 -1.2455 0.6921 6 7 3.2494 -1.5470 -0.7353 7 6 4.0007 -2.3781 -1.4844 8 8 3.7297 -2.5521 -2.6568 9 7 5.0524 -3.0164 -0.9338 10 6 5.8687 -3.9203 -1.7480 11 6 6.9888 -4.5095 -0.8884 12 6 7.8410 -5.4540 -1.7386 13 6 8.9440 -6.0349 -0.8917 14 1 9.0290 -5.7578 0.1487 15 6 9.8453 -6.9193 -1.4454 16 7 9.7421 -7.2563 -2.7124 17 14 11.2129 -7.6387 -0.3958 18 1 10.7427 -8.8984 0.2345 19 1 12.3944 -7.9232 -1.2493 20 1 11.5889 -6.6664 0.6618 21 6 2.0799 -0.7905 -1.2058 22 1 -0.3634 0.4642 0.9167 23 1 -0.3634 0.5618 -0.8605 24 1 -0.3634 -1.0262 -0.0563 25 1 2.1819 -0.1489 2.0883 26 1 1.4465 -1.6525 1.4389 27 1 4.1933 -0.4421 0.8040 28 1 3.7985 -2.1373 1.2227 29 1 5.2687 -2.8774 0.0014 30 1 5.2440 -4.7260 -2.1336 31 1 6.3030 -3.3670 -2.5807 32 1 7.6134 -3.7036 -0.5031 33 1 6.5549 -5.0629 -0.0555 34 1 7.2162 -6.2599 -2.1234 35 1 8.2750 -4.9011 -2.5716 36 1 10.3764 -7.8782 -3.1020 37 1 1.3191 -1.4772 -1.5770 38 1 2.3750 -0.1016 -1.9973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337099058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:43 Heat of formation + Delta-G solvation = -73.524149 kcal Electronic energy + Delta-G solvation = -16843.006464 eV Core-core repulsion = 14104.596960 eV Total energy + Delta-G solvation = -2738.409504 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34420 -38.94419 -36.94535 -35.23928 -34.03439 -32.69401 -30.55296 -28.82918 -27.08146 -24.92756 -23.87792 -22.30595 -21.29802 -20.83489 -19.09169 -18.48019 -17.60084 -17.02640 -16.50889 -16.36150 -15.55131 -15.46231 -14.76166 -14.33308 -14.28243 -14.16325 -13.79057 -13.61721 -13.51576 -13.26532 -12.75254 -12.68602 -12.54426 -12.37022 -11.96478 -11.68866 -11.67400 -11.64263 -11.51413 -11.32135 -11.15515 -10.55368 -10.29269 -9.52581 -8.19243 -6.31012 1.41944 1.43716 1.54062 1.56641 2.05562 2.42229 3.01245 3.14527 3.57640 3.65782 3.93172 4.14175 4.20542 4.30389 4.42178 4.53437 4.54722 4.64218 4.73644 4.87029 4.92865 4.94265 4.96615 5.08560 5.14518 5.15604 5.23705 5.36234 5.43959 5.47706 5.52929 5.70160 5.83938 6.01024 6.22269 6.85885 6.93539 7.38600 7.49074 8.93107 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.059671 B = 0.003525 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.127852 B = 7941.650937 C = 8320.216188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.099 0.901 4 C -0.119 4.119 5 C 0.088 3.912 6 N -0.639 5.639 7 C 0.710 3.290 8 O -0.643 6.643 9 N -0.728 5.728 10 C 0.149 3.851 11 C -0.099 4.099 12 C 0.024 3.976 13 C -0.541 4.541 14 H 0.068 0.932 15 C -0.004 4.004 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.259 1.259 21 C 0.121 3.879 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.410 0.590 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.068 0.932 34 H -0.008 1.008 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.052 0.948 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.554 16.109 12.209 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.117 0.883 4 C -0.157 4.157 5 C -0.034 4.034 6 N -0.377 5.377 7 C 0.411 3.589 8 O -0.525 6.525 9 N -0.384 5.384 10 C 0.024 3.976 11 C -0.137 4.137 12 C -0.014 4.014 13 C -0.579 4.579 14 H 0.086 0.914 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.183 1.183 21 C -0.002 4.002 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.131 0.869 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.246 0.754 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.010 0.990 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.617 15.830 11.191 25.533 hybrid contribution 0.958 -0.715 0.006 1.196 sum -15.658 15.115 11.197 24.475 Atomic orbital electron populations 1.21740 0.92659 1.02150 1.03117 1.22230 0.97099 0.99386 0.92624 0.88308 1.22872 0.93905 1.00775 0.98101 1.22641 0.99875 1.01653 0.79206 1.47670 1.31316 1.46371 1.12372 1.15735 0.80124 0.79039 0.83979 1.90876 1.74194 1.70104 1.17350 1.45045 1.30179 1.48222 1.14928 1.21110 0.91501 0.91317 0.93640 1.21584 0.95033 0.98837 0.98224 1.18941 0.93992 0.93592 0.94865 1.21680 1.12735 1.26029 0.97431 0.91419 1.26048 1.00812 0.97071 0.96266 1.70119 1.38345 1.35190 1.13987 0.85389 0.77927 0.78882 0.78485 1.19793 1.21065 1.18317 1.22021 0.86187 0.93937 0.98050 0.90278 0.92118 0.93004 0.86930 0.90482 0.89985 0.89968 0.75351 0.93561 0.93551 0.91304 0.91300 0.98958 0.98944 0.92800 0.92924 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.17 71.98 0.66 -0.63 16 2 C -0.09 -1.10 3.54 -9.61 -0.03 -1.13 16 3 H 0.10 0.92 8.14 -2.38 -0.02 0.91 16 4 C -0.12 -1.16 6.53 31.98 0.21 -0.96 16 5 C 0.09 1.31 6.58 86.85 0.57 1.88 16 6 N -0.64 -15.79 3.33 -829.66 -2.76 -18.55 16 7 C 0.71 24.28 8.49 179.05 1.52 25.80 16 8 O -0.64 -28.36 16.67 -3.99 -0.07 -28.43 16 9 N -0.73 -22.69 5.52 -478.54 -2.64 -25.32 16 10 C 0.15 5.66 5.67 86.38 0.49 6.15 16 11 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 12 C 0.02 1.26 4.97 29.85 0.15 1.41 16 13 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 14 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 15 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 16 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 17 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 21 C 0.12 2.55 6.47 86.73 0.56 3.11 16 22 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 24 H 0.05 0.57 8.07 -2.38 -0.02 0.55 16 25 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.08 0.81 8.05 -2.39 -0.02 0.79 16 27 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.08 1.10 7.30 -2.39 -0.02 1.08 16 29 H 0.41 9.88 6.95 -92.71 -0.64 9.23 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.05 1.23 7.78 -2.39 -0.02 1.21 16 38 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -74.42 312.82 2.20 -72.22 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.38 Total: 9.74 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 4.98 Total: 1.86 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -5.11 Total: -101.39 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.07 Total: -28.43 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -74.42 2.20 -72.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337099058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.306 kcal (2) G-P(sol) polarization free energy of solvation -74.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds