Wall clock time and date at job start Sun Mar 29 2020 22:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46953 * 2 1 4 4 N 1.46496 * 109.47295 * 119.99658 * 2 1 3 5 5 C 1.34771 * 120.00348 * 292.96942 * 4 2 1 6 6 O 1.21585 * 120.00614 * 188.50695 * 5 4 2 7 7 N 1.34778 * 119.99735 * 8.50766 * 5 4 2 8 8 C 1.46510 * 119.99871 * 185.77478 * 7 5 4 9 9 C 1.53001 * 109.46996 * 180.02562 * 8 7 5 10 10 C 1.50695 * 109.46943 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00134 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99868 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00108 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00205 * 359.97438 * 12 10 9 15 15 H 1.48490 * 109.47350 * 90.00220 * 14 12 10 16 16 H 1.48498 * 109.47181 * 210.00790 * 14 12 10 17 17 H 1.48500 * 109.46894 * 330.00259 * 14 12 10 18 18 C 1.46504 * 119.99900 * 112.69017 * 4 2 1 19 19 C 1.52994 * 117.49740 * 195.35705 * 18 4 2 20 20 C 1.52995 * 117.50057 * 126.73405 * 18 4 2 21 21 H 1.08999 * 109.47080 * 292.38289 * 1 2 3 22 22 H 1.09000 * 109.46948 * 52.38587 * 1 2 3 23 23 H 1.09001 * 109.46945 * 172.37977 * 1 2 3 24 24 H 1.09001 * 109.47097 * 239.99903 * 2 1 3 25 25 H 1.08998 * 109.47388 * 185.79450 * 3 2 1 26 26 H 1.08995 * 109.47226 * 305.79302 * 3 2 1 27 27 H 1.08997 * 109.47109 * 65.79256 * 3 2 1 28 28 H 0.96997 * 120.00174 * 5.77479 * 7 5 4 29 29 H 1.08995 * 109.46734 * 299.99914 * 8 7 5 30 30 H 1.08997 * 109.46950 * 60.00382 * 8 7 5 31 31 H 1.09000 * 109.46782 * 300.00306 * 9 8 7 32 32 H 1.08997 * 109.47250 * 59.99799 * 9 8 7 33 33 H 0.97005 * 120.00113 * 179.97438 * 13 12 10 34 34 H 1.08999 * 115.54789 * 341.06085 * 18 4 2 35 35 H 1.09001 * 117.50327 * 0.02562 * 19 18 4 36 36 H 1.09009 * 117.50014 * 145.01734 * 19 18 4 37 37 H 1.08993 * 117.50187 * 214.98180 * 20 18 4 38 38 H 1.08998 * 117.49819 * 359.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.8137 -0.1534 2.4152 6 8 2.3487 -0.6410 3.3921 7 7 1.0157 0.9242 2.5513 8 6 0.8928 1.5848 3.8533 9 6 -0.0667 2.7706 3.7348 10 6 -0.1927 3.4504 5.0738 11 1 0.3562 3.0741 5.9243 12 6 -1.0097 4.5523 5.2134 13 7 -1.1193 5.1459 6.3818 14 14 -1.9599 5.2029 3.7425 15 1 -3.2859 4.5379 3.6762 16 1 -2.1479 6.6691 3.8838 17 1 -1.2009 4.9189 2.4981 18 6 2.7240 -1.9680 1.0677 19 6 2.8915 -2.8127 2.3323 20 6 4.0970 -2.0866 1.7322 21 1 -0.3633 0.3913 0.9502 22 1 -0.3633 0.6272 -0.8141 23 1 -0.3633 -1.0186 -0.1363 24 1 1.8934 -0.5139 -0.8900 25 1 3.1250 1.4444 -0.1037 26 1 1.5945 1.9854 -0.8335 27 1 1.7638 1.9255 0.9373 28 1 0.5229 1.2624 1.7874 29 1 0.5053 0.8760 4.5850 30 1 1.8719 1.9399 4.1744 31 1 0.3204 3.4794 3.0028 32 1 -1.0458 2.4152 3.4138 33 1 -1.6938 5.9213 6.4799 34 1 2.5734 -2.4956 0.1259 35 1 2.4763 -2.4183 3.2597 36 1 2.8509 -3.8965 2.2226 37 1 4.8496 -2.6925 1.2278 38 1 4.4756 -1.2140 2.2645 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345855342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:11 Heat of formation + Delta-G solvation = 17.210441 kcal Electronic energy + Delta-G solvation = -17928.085947 eV Core-core repulsion = 15193.610990 eV Total energy + Delta-G solvation = -2734.474957 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62619 -36.82322 -36.32308 -34.41498 -32.58860 -30.73968 -29.84598 -27.36523 -25.18943 -22.76229 -22.23107 -21.77215 -20.75506 -19.71692 -17.16917 -16.63554 -16.46707 -15.37794 -15.02950 -14.35403 -14.22988 -14.06865 -13.90875 -13.82322 -13.11559 -13.01612 -12.61910 -12.31589 -11.95884 -11.65595 -11.50998 -11.38738 -11.14431 -10.92047 -10.83306 -10.35628 -10.23883 -10.16103 -9.94003 -9.44036 -9.26920 -8.62575 -8.51411 -8.12778 -6.10319 -4.10198 2.79435 3.25072 3.32519 3.33726 3.38082 3.99126 4.16242 4.38029 4.65075 4.90499 4.93194 5.04051 5.05054 5.21798 5.22525 5.43383 5.45092 5.57208 5.66711 5.76361 5.82794 5.98707 6.09320 6.10897 6.21857 6.27331 6.50724 6.59316 6.75973 6.95885 7.06954 7.24747 7.28510 7.68303 8.25360 8.46337 8.92293 8.95418 9.49885 11.02777 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.005946 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.125063 B = 4708.274948 C = 5284.708864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.138 3.862 3 C -0.188 4.188 4 N -0.605 5.605 5 C 0.705 3.295 6 O -0.584 6.584 7 N -0.746 5.746 8 C 0.142 3.858 9 C -0.021 4.021 10 C -0.521 4.521 11 H 0.076 0.924 12 C 0.070 3.930 13 N -0.899 5.899 14 Si 0.881 3.119 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.266 1.266 18 C 0.087 3.913 19 C -0.192 4.192 20 C -0.188 4.188 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.396 0.604 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.020 0.980 32 H 0.016 0.984 33 H 0.264 0.736 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.962 -11.645 -16.713 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.034 3.966 3 C -0.246 4.246 4 N -0.341 5.341 5 C 0.407 3.593 6 O -0.463 6.463 7 N -0.406 5.406 8 C 0.020 3.980 9 C -0.059 4.059 10 C -0.559 4.559 11 H 0.094 0.906 12 C -0.132 4.132 13 N -0.537 5.537 14 Si 0.708 3.292 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.018 4.018 19 C -0.230 4.230 20 C -0.227 4.227 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.109 0.891 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.238 0.762 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.248 -11.785 -15.891 20.469 hybrid contribution -0.790 0.624 -1.131 1.514 sum 4.458 -11.160 -17.022 20.837 Atomic orbital electron populations 1.22528 0.95376 1.03019 1.03181 1.21048 0.93886 0.93555 0.88065 1.22539 1.02239 0.95678 1.04133 1.46708 1.60363 1.22346 1.04722 1.16017 0.79993 0.80557 0.82688 1.90730 1.54734 1.62897 1.37982 1.46455 1.48170 1.31237 1.14756 1.21397 1.00405 0.94374 0.81860 1.19790 0.94174 0.93023 0.98928 1.20911 1.27987 1.12513 0.94523 0.90562 1.24991 0.96259 0.96253 0.95729 1.69905 1.38960 1.21550 1.23276 0.86770 0.80618 0.78185 0.83624 1.20215 1.21253 1.19112 1.21409 0.96411 0.86092 0.97870 1.23850 1.01950 0.96933 1.00231 1.23251 0.91375 1.03598 1.04518 0.91303 0.90932 0.91770 0.89066 0.91875 0.91052 0.90284 0.76237 0.92064 0.92222 0.96164 0.96577 0.92564 0.85897 0.84296 0.89762 0.89253 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.09 37.16 0.34 -1.46 16 2 C 0.14 1.44 3.29 -67.93 -0.22 1.21 16 3 C -0.19 -2.02 8.94 37.16 0.33 -1.69 16 4 N -0.61 -8.20 2.79 -164.24 -0.46 -8.66 16 5 C 0.71 12.35 7.41 -86.92 -0.64 11.70 16 6 O -0.58 -12.01 12.13 5.29 0.06 -11.95 16 7 N -0.75 -13.04 3.73 -65.22 -0.24 -13.28 16 8 C 0.14 2.99 5.62 -4.04 -0.02 2.97 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 11 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 14 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 18 C 0.09 1.05 6.55 -67.93 -0.44 0.61 16 19 C -0.19 -2.56 9.62 -26.74 -0.26 -2.82 16 20 C -0.19 -2.36 9.88 -26.74 -0.26 -2.63 16 21 H 0.07 0.83 5.19 -51.93 -0.27 0.56 16 22 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.09 0.74 7.89 -51.93 -0.41 0.33 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.08 1.06 5.01 -51.93 -0.26 0.80 16 28 H 0.40 6.09 3.32 -40.82 -0.14 5.95 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 32 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.12 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.14 2.37 5.23 -52.06 -0.27 2.10 16 36 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.49 7.61 -51.93 -0.40 1.09 16 LS Contribution 298.99 15.07 4.51 4.51 Total: -1.00 -31.70 298.99 -7.65 -39.35 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.89 Total: 6.11 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.73 Total: -5.82 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.07 Total: -48.57 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.06 Total: -11.95 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.70 -7.65 -39.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345855342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.559 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds