Wall clock time and date at job start Sun Mar 29 2020 22:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46953 * 2 1 4 4 N 1.46496 * 109.47295 * 119.99658 * 2 1 3 5 5 C 1.34771 * 120.00348 * 292.96942 * 4 2 1 6 6 O 1.21585 * 120.00614 * 188.50695 * 5 4 2 7 7 N 1.34778 * 119.99735 * 8.50766 * 5 4 2 8 8 C 1.46510 * 119.99871 * 185.77478 * 7 5 4 9 9 C 1.53001 * 109.46996 * 180.02562 * 8 7 5 10 10 C 1.50695 * 109.46943 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00134 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99868 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00108 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00205 * 359.97438 * 12 10 9 15 15 H 1.48490 * 109.47350 * 90.00220 * 14 12 10 16 16 H 1.48498 * 109.47181 * 210.00790 * 14 12 10 17 17 H 1.48500 * 109.46894 * 330.00259 * 14 12 10 18 18 C 1.46504 * 119.99900 * 112.69017 * 4 2 1 19 19 C 1.52994 * 117.49740 * 195.35705 * 18 4 2 20 20 C 1.52995 * 117.50057 * 126.73405 * 18 4 2 21 21 H 1.08999 * 109.47080 * 292.38289 * 1 2 3 22 22 H 1.09000 * 109.46948 * 52.38587 * 1 2 3 23 23 H 1.09001 * 109.46945 * 172.37977 * 1 2 3 24 24 H 1.09001 * 109.47097 * 239.99903 * 2 1 3 25 25 H 1.08998 * 109.47388 * 185.79450 * 3 2 1 26 26 H 1.08995 * 109.47226 * 305.79302 * 3 2 1 27 27 H 1.08997 * 109.47109 * 65.79256 * 3 2 1 28 28 H 0.96997 * 120.00174 * 5.77479 * 7 5 4 29 29 H 1.08995 * 109.46734 * 299.99914 * 8 7 5 30 30 H 1.08997 * 109.46950 * 60.00382 * 8 7 5 31 31 H 1.09000 * 109.46782 * 300.00306 * 9 8 7 32 32 H 1.08997 * 109.47250 * 59.99799 * 9 8 7 33 33 H 0.97005 * 120.00113 * 179.97438 * 13 12 10 34 34 H 1.08999 * 115.54789 * 341.06085 * 18 4 2 35 35 H 1.09001 * 117.50327 * 0.02562 * 19 18 4 36 36 H 1.09009 * 117.50014 * 145.01734 * 19 18 4 37 37 H 1.08993 * 117.50187 * 214.98180 * 20 18 4 38 38 H 1.08998 * 117.49819 * 359.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.8137 -0.1534 2.4152 6 8 2.3487 -0.6410 3.3921 7 7 1.0157 0.9242 2.5513 8 6 0.8928 1.5848 3.8533 9 6 -0.0667 2.7706 3.7348 10 6 -0.1927 3.4504 5.0738 11 1 0.3562 3.0741 5.9243 12 6 -1.0097 4.5523 5.2134 13 7 -1.1193 5.1459 6.3818 14 14 -1.9599 5.2029 3.7425 15 1 -3.2859 4.5379 3.6762 16 1 -2.1479 6.6691 3.8838 17 1 -1.2009 4.9189 2.4981 18 6 2.7240 -1.9680 1.0677 19 6 2.8915 -2.8127 2.3323 20 6 4.0970 -2.0866 1.7322 21 1 -0.3633 0.3913 0.9502 22 1 -0.3633 0.6272 -0.8141 23 1 -0.3633 -1.0186 -0.1363 24 1 1.8934 -0.5139 -0.8900 25 1 3.1250 1.4444 -0.1037 26 1 1.5945 1.9854 -0.8335 27 1 1.7638 1.9255 0.9373 28 1 0.5229 1.2624 1.7874 29 1 0.5053 0.8760 4.5850 30 1 1.8719 1.9399 4.1744 31 1 0.3204 3.4794 3.0028 32 1 -1.0458 2.4152 3.4138 33 1 -1.6938 5.9213 6.4799 34 1 2.5734 -2.4956 0.1259 35 1 2.4763 -2.4183 3.2597 36 1 2.8509 -3.8965 2.2226 37 1 4.8496 -2.6925 1.2278 38 1 4.4756 -1.2140 2.2645 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345855342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:11 Heat of formation + Delta-G solvation = -3.072293 kcal Electronic energy + Delta-G solvation = -17928.965472 eV Core-core repulsion = 15193.610990 eV Total energy + Delta-G solvation = -2735.354483 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.85050 -38.05208 -37.46463 -36.00726 -34.52572 -31.98922 -31.46350 -28.14119 -27.01474 -24.12523 -23.24494 -22.75757 -22.42119 -21.11082 -19.04504 -17.94929 -17.62216 -16.76829 -16.41922 -16.07120 -15.53521 -15.40852 -15.21605 -14.81085 -14.60042 -14.25603 -14.13550 -13.40140 -13.18899 -13.06420 -12.78115 -12.55654 -12.36195 -12.17036 -12.06041 -11.84691 -11.80562 -11.72518 -11.49361 -11.19593 -10.80096 -10.76695 -9.98087 -9.27665 -8.30743 -6.38342 1.37848 1.40809 1.52057 1.64498 2.04934 2.36242 2.84713 3.03962 3.08608 3.82862 4.00179 4.08115 4.11757 4.23967 4.29208 4.31705 4.41077 4.58550 4.65327 4.72156 4.80904 4.86840 4.91906 4.97498 5.07433 5.18028 5.25646 5.31571 5.37335 5.39481 5.50838 5.68947 5.82303 5.97474 6.22092 6.68325 7.00040 7.26180 7.59548 8.86147 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.005946 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.125063 B = 4708.274948 C = 5284.708864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.133 3.867 3 C -0.187 4.187 4 N -0.599 5.599 5 C 0.697 3.303 6 O -0.624 6.624 7 N -0.737 5.737 8 C 0.159 3.841 9 C -0.009 4.009 10 C -0.539 4.539 11 H 0.028 0.972 12 C 0.006 3.994 13 N -0.950 5.950 14 Si 0.958 3.042 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.237 1.237 18 C 0.094 3.906 19 C -0.208 4.208 20 C -0.188 4.188 21 H 0.042 0.958 22 H 0.098 0.902 23 H 0.071 0.929 24 H 0.129 0.871 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.049 0.951 28 H 0.410 0.590 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.268 0.732 34 H 0.171 0.829 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -12.355 -21.279 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.031 3.969 3 C -0.245 4.245 4 N -0.334 5.334 5 C 0.399 3.601 6 O -0.506 6.506 7 N -0.399 5.399 8 C 0.035 3.965 9 C -0.047 4.047 10 C -0.578 4.578 11 H 0.046 0.954 12 C -0.191 4.191 13 N -0.590 5.590 14 Si 0.779 3.221 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.160 1.160 18 C -0.010 4.010 19 C -0.245 4.245 20 C -0.226 4.226 21 H 0.061 0.939 22 H 0.117 0.883 23 H 0.090 0.910 24 H 0.147 0.853 25 H 0.078 0.922 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.254 0.746 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.188 0.812 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.541 -12.519 -20.516 24.459 hybrid contribution -0.491 0.793 0.374 1.005 sum 4.049 -11.727 -20.142 23.656 Atomic orbital electron populations 1.22518 0.94671 1.03982 1.02660 1.21403 0.94439 0.93395 0.87674 1.22535 1.02287 0.96078 1.03611 1.46868 1.59604 1.22767 1.04185 1.16286 0.79743 0.80347 0.83731 1.90745 1.56004 1.63901 1.39916 1.46178 1.48786 1.31331 1.13618 1.20883 0.98699 0.93515 0.83423 1.19617 0.95386 0.93404 0.96308 1.21216 1.27659 1.13307 0.95576 0.95356 1.26069 0.97341 0.96312 0.99418 1.70076 1.40249 1.22399 1.26268 0.85560 0.79298 0.77300 0.79896 1.18893 1.21016 1.15972 1.21900 0.95187 0.85113 0.98840 1.23701 1.02921 0.98538 0.99354 1.23215 0.92235 1.02634 1.04556 0.93911 0.88311 0.90964 0.85297 0.92247 0.88266 0.93219 0.74607 0.94269 0.94247 0.94643 0.94942 0.92269 0.81211 0.88593 0.87050 0.86006 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 9.09 71.98 0.65 -2.18 16 2 C 0.13 2.24 3.29 44.99 0.15 2.39 16 3 C -0.19 -3.44 8.94 71.98 0.64 -2.80 16 4 N -0.60 -15.02 2.79 -791.80 -2.21 -17.23 16 5 C 0.70 24.57 7.41 179.06 1.33 25.89 16 6 O -0.62 -26.96 12.13 -3.98 -0.05 -27.00 16 7 N -0.74 -25.77 3.73 -478.53 -1.78 -27.55 16 8 C 0.16 6.95 5.62 86.38 0.49 7.44 16 9 C -0.01 -0.43 4.16 29.85 0.12 -0.31 16 10 C -0.54 -31.43 9.66 25.60 0.25 -31.18 16 11 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 12 C 0.01 0.34 5.47 84.65 0.46 0.80 16 13 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 14 Si 0.96 42.49 27.47 68.60 1.88 44.38 16 15 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 18 C 0.09 1.98 6.55 44.99 0.29 2.28 16 19 C -0.21 -5.35 9.62 30.59 0.29 -5.06 16 20 C -0.19 -4.45 9.88 30.59 0.30 -4.15 16 21 H 0.04 0.91 5.19 -2.39 -0.01 0.90 16 22 H 0.10 1.06 8.12 -2.39 -0.02 1.04 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.13 1.31 7.89 -2.39 -0.02 1.29 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.27 8.13 -2.39 -0.02 1.25 16 27 H 0.05 1.23 5.01 -2.39 -0.01 1.22 16 28 H 0.41 12.00 3.32 -92.71 -0.31 11.70 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 32 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 33 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 34 H 0.17 2.05 8.07 -2.39 -0.02 2.04 16 35 H 0.10 3.43 5.23 -4.50 -0.02 3.41 16 36 H 0.11 2.20 8.14 -2.38 -0.02 2.19 16 37 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.91 7.61 -2.39 -0.02 1.89 16 Total: -1.00 -74.08 298.99 3.80 -70.29 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.67 Total: 23.43 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.98 Total: -6.87 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -3.69 Total: -104.22 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.38 kcal Total: -74.08 3.80 -70.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345855342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.213 kcal (2) G-P(sol) polarization free energy of solvation -74.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds