Wall clock time and date at job start Sun Mar 29 2020 22:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01836 * 2 1 4 4 C 1.54268 * 110.03412 * 121.39209 * 2 1 3 5 5 C 1.54887 * 104.19498 * 142.89489 * 4 2 1 6 6 C 1.54888 * 102.75281 * 322.05663 * 5 4 2 7 7 H 1.08992 * 110.48719 * 279.26678 * 6 5 4 8 8 C 1.53003 * 110.48972 * 156.75153 * 6 5 4 9 9 N 1.46500 * 109.46715 * 66.45385 * 8 6 5 10 10 C 1.34779 * 119.99797 * 179.97438 * 9 8 6 11 11 O 1.21589 * 119.99997 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00071 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00236 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47402 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99483 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00155 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99616 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00244 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47359 * 89.99705 * 18 16 14 20 20 H 1.48496 * 109.47260 * 209.99733 * 18 16 14 21 21 H 1.48504 * 109.47142 * 329.99735 * 18 16 14 22 22 C 1.53875 * 110.03401 * 238.61204 * 2 1 3 23 23 H 1.09002 * 109.47153 * 300.69904 * 1 2 3 24 24 H 1.09001 * 109.46832 * 180.70094 * 1 2 3 25 25 H 1.09004 * 109.47261 * 60.70076 * 1 2 3 26 26 H 1.08997 * 110.48505 * 261.56885 * 4 2 1 27 27 H 1.08997 * 110.48820 * 24.08363 * 4 2 1 28 28 H 1.09005 * 110.75937 * 80.37435 * 5 4 2 29 29 H 1.09001 * 110.75793 * 203.73768 * 5 4 2 30 30 H 1.08998 * 109.46871 * 186.45411 * 8 6 5 31 31 H 1.08998 * 109.46996 * 306.46003 * 8 6 5 32 32 H 0.96997 * 119.99983 * 0.02562 * 9 8 6 33 33 H 0.97005 * 119.99810 * 0.02562 * 12 10 9 34 34 H 1.09004 * 109.47119 * 300.00015 * 13 12 10 35 35 H 1.09001 * 109.47211 * 59.99533 * 13 12 10 36 36 H 0.97000 * 119.99299 * 180.02562 * 17 16 14 37 37 H 1.09009 * 110.03019 * 359.97438 * 22 2 1 38 38 H 1.09000 * 110.03798 * 121.42953 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 3.3137 -1.5004 0.7197 6 6 2.8875 -1.9410 -0.7027 7 1 2.2772 -2.8428 -0.6559 8 6 4.1176 -2.1733 -1.5824 9 7 4.8705 -3.3231 -1.0751 10 6 5.9998 -3.7165 -1.6968 11 8 6.3939 -3.1169 -2.6784 12 7 6.6922 -4.7746 -1.2305 13 6 7.9200 -5.2018 -1.9058 14 6 8.4960 -6.3975 -1.1919 15 1 7.9976 -6.7987 -0.3219 16 6 9.6599 -6.9785 -1.6489 17 7 10.2670 -6.4896 -2.7081 18 14 10.3743 -8.4601 -0.7636 19 1 9.8157 -9.7045 -1.3507 20 1 11.8516 -8.4617 -0.9139 21 1 10.0235 -8.3921 0.6778 22 6 2.0571 -0.7529 -1.2341 23 1 -0.3633 0.5247 0.8837 24 1 -0.3633 -1.0276 0.0126 25 1 -0.3634 0.5029 -0.8962 26 1 2.3298 -0.0527 2.0254 27 1 1.3134 -1.4636 1.5987 28 1 4.1711 -0.8287 0.6754 29 1 3.5326 -2.3672 1.3432 30 1 3.8000 -2.3701 -2.6064 31 1 4.7512 -1.2867 -1.5625 32 1 4.5558 -3.8017 -0.2923 33 1 6.3775 -5.2532 -0.4476 34 1 7.6926 -5.4700 -2.9376 35 1 8.6439 -4.3871 -1.8933 36 1 11.0856 -6.8987 -3.0298 37 1 1.2228 -1.1188 -1.8328 38 1 2.6867 -0.0945 -1.8325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354403595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:57 Heat of formation + Delta-G solvation = -65.108773 kcal Electronic energy + Delta-G solvation = -16857.290689 eV Core-core repulsion = 14119.246103 eV Total energy + Delta-G solvation = -2738.044586 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.46953 -38.48322 -34.64737 -33.91607 -32.30600 -31.23294 -29.44538 -27.28233 -25.79108 -23.87898 -22.33695 -20.47664 -20.22029 -19.54486 -17.91420 -16.42928 -15.87680 -15.40749 -15.14968 -14.72076 -14.48784 -13.85130 -13.63966 -13.35570 -13.26763 -13.01316 -12.59006 -12.18634 -11.92535 -11.65581 -11.24142 -10.97357 -10.95901 -10.91867 -10.86639 -10.78477 -10.78014 -10.56145 -10.26911 -9.34540 -9.32662 -8.71928 -8.60300 -7.69382 -6.12134 -4.18490 3.26835 3.32063 3.34707 3.47943 4.03403 4.33856 4.37150 4.42569 4.50115 4.96168 5.09777 5.15590 5.23828 5.24046 5.28100 5.33383 5.42993 5.49420 5.58113 5.66647 5.73232 5.87325 5.90450 5.93984 5.99695 6.08931 6.23163 6.29064 6.96554 7.18708 7.57236 7.60777 7.61983 7.96405 8.09682 8.81052 9.01069 9.39140 9.53632 10.98225 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.059667 B = 0.003617 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.159578 B = 7739.849506 C = 8056.354835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.070 0.930 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.104 4.104 7 H 0.079 0.921 8 C 0.149 3.851 9 N -0.757 5.757 10 C 0.692 3.308 11 O -0.603 6.603 12 N -0.731 5.731 13 C 0.267 3.733 14 C -0.541 4.541 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.113 4.113 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.390 0.610 33 H 0.386 0.614 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.067 0.933 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.370 10.143 7.980 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.123 4.123 7 H 0.097 0.903 8 C 0.024 3.976 9 N -0.414 5.414 10 C 0.391 3.609 11 O -0.482 6.482 12 N -0.383 5.383 13 C 0.146 3.854 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.151 4.151 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.223 0.777 33 H 0.218 0.782 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.785 10.666 6.908 21.859 hybrid contribution 0.168 -1.260 1.116 1.691 sum -17.617 9.407 8.024 21.523 Atomic orbital electron populations 1.21891 0.95187 1.01719 1.01404 1.21743 0.95493 0.99476 0.94909 0.91129 1.22446 0.97393 0.98924 0.97056 1.22575 0.97738 1.00058 0.95405 1.22258 0.95954 0.98813 0.95229 0.90298 1.21101 0.91051 0.88531 0.96899 1.45147 1.27054 1.35015 1.34191 1.16175 0.80029 0.81599 0.83086 1.90866 1.70693 1.58339 1.28319 1.45707 1.28495 1.30844 1.33240 1.18964 0.79244 0.94492 0.92743 1.21237 1.09223 1.13717 1.13754 0.91975 1.24951 0.96508 0.97570 0.95062 1.69988 1.18503 1.40658 1.23195 0.86410 0.78242 0.82387 0.79818 1.20506 1.21031 1.19786 1.22225 0.99183 0.96412 0.97311 0.92931 0.92620 0.92798 0.91876 0.91610 0.91065 0.91515 0.92178 0.92041 0.77705 0.78243 0.95804 0.95788 0.92495 0.91461 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.84 37.16 0.33 -0.64 16 2 C -0.10 -0.75 3.50 -89.50 -0.31 -1.06 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.12 -0.94 6.36 -25.07 -0.16 -1.10 16 5 C -0.12 -1.09 6.01 -24.74 -0.15 -1.24 16 6 C -0.10 -1.00 2.93 -88.90 -0.26 -1.26 16 7 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 8 C 0.15 2.00 4.97 -4.04 -0.02 1.98 16 9 N -0.76 -11.67 5.40 -65.23 -0.35 -12.02 16 10 C 0.69 14.82 8.57 -86.92 -0.74 14.08 16 11 O -0.60 -15.66 16.34 5.29 0.09 -15.58 16 12 N -0.73 -16.13 5.55 -66.41 -0.37 -16.50 16 13 C 0.27 7.33 5.43 -5.19 -0.03 7.30 16 14 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.11 -0.97 6.04 -25.55 -0.15 -1.12 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.37 8.13 -51.93 -0.42 -0.05 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.48 7.84 -51.93 -0.41 0.08 16 28 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.39 4.84 8.34 -40.82 -0.34 4.50 16 33 H 0.39 7.26 8.34 -40.82 -0.34 6.92 16 34 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 37 H 0.07 0.54 7.67 -51.92 -0.40 0.14 16 38 H 0.07 0.61 7.85 -51.93 -0.41 0.21 16 LS Contribution 312.28 15.07 4.71 4.71 Total: -1.00 -32.85 312.28 -8.62 -41.47 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.49 Total: 4.36 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.92 Total: 3.30 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.02 Total: -54.34 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.09 Total: -15.58 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.85 -8.62 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354403595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.642 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds