Wall clock time and date at job start Sun Mar 29 2020 22:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47058 * 2 1 4 4 N 1.46500 * 109.46823 * 119.99411 * 2 1 3 5 5 C 1.46010 * 118.53546 * 119.98270 * 4 2 1 6 6 C 1.52976 * 110.04431 * 161.86072 * 5 4 2 7 7 N 1.47186 * 108.74175 * 50.27646 * 6 5 4 8 8 C 1.46906 * 110.99676 * 167.64827 * 7 6 5 9 9 C 1.52997 * 109.46848 * 188.93714 * 8 7 6 10 10 C 1.50706 * 109.47203 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99617 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00090 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00061 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99728 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47167 * 90.00414 * 14 12 10 16 16 H 1.48504 * 109.47273 * 210.00001 * 14 12 10 17 17 H 1.48501 * 109.47513 * 330.00244 * 14 12 10 18 18 C 1.46898 * 110.17728 * 291.01324 * 7 6 5 19 19 C 1.33711 * 118.53854 * 300.00150 * 4 2 1 20 20 O 1.21286 * 118.62835 * 1.66804 * 19 4 2 21 21 H 1.08993 * 109.47461 * 300.00377 * 1 2 3 22 22 H 1.09005 * 109.46542 * 60.00451 * 1 2 3 23 23 H 1.09000 * 109.47024 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47461 * 239.99623 * 2 1 3 25 25 H 1.09001 * 109.47530 * 59.99432 * 3 2 1 26 26 H 1.09000 * 109.47155 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47076 * 299.99222 * 3 2 1 28 28 H 1.09001 * 109.37677 * 282.03633 * 5 4 2 29 29 H 1.08994 * 109.37519 * 41.80044 * 5 4 2 30 30 H 1.09001 * 109.57378 * 290.50637 * 6 5 4 31 31 H 1.08998 * 109.59510 * 170.06269 * 6 5 4 32 32 H 1.08998 * 109.47121 * 308.93547 * 8 7 6 33 33 H 1.09000 * 109.47141 * 68.93746 * 8 7 6 34 34 H 1.08998 * 109.47584 * 300.00097 * 9 8 7 35 35 H 1.09005 * 109.46901 * 60.00396 * 9 8 7 36 36 H 0.97010 * 119.99768 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.38759 * 170.45480 * 18 7 6 38 38 H 1.09000 * 109.38691 * 290.14716 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8551 -1.8747 1.0253 6 6 3.6135 -2.1722 2.3202 7 7 2.6562 -2.1781 3.4382 8 6 3.2662 -2.7407 4.6504 9 6 2.1891 -2.9372 5.7191 10 6 2.8147 -3.5149 6.9626 11 1 3.8745 -3.7209 6.9881 12 6 2.0341 -3.7795 8.0678 13 7 0.7437 -3.5282 8.0369 14 14 2.8098 -4.4949 9.6092 15 1 3.2555 -3.3912 10.4971 16 1 1.8119 -5.3318 10.3228 17 1 3.9784 -5.3305 9.2334 18 6 2.1549 -0.8192 3.6832 19 6 1.6774 -0.2084 2.3960 20 8 0.9527 0.7628 2.4475 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.6766 1.9564 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 2.2266 -2.7279 0.7702 29 1 3.5701 -1.6993 0.2216 30 1 4.3663 -1.4019 2.4876 31 1 4.0951 -3.1472 2.2460 32 1 3.7236 -3.7015 4.4146 33 1 4.0286 -2.0572 5.0243 34 1 1.7316 -1.9764 5.9549 35 1 1.4267 -3.6207 5.3452 36 1 0.1946 -3.7141 8.8147 37 1 1.3282 -0.8609 4.3924 38 1 2.9556 -0.2075 4.0987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356344193.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:36 Heat of formation + Delta-G solvation = -32.993531 kcal Electronic energy + Delta-G solvation = -17790.831323 eV Core-core repulsion = 15054.179358 eV Total energy + Delta-G solvation = -2736.651965 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53116 -37.24978 -35.94071 -33.48264 -32.23933 -29.68878 -29.36939 -27.15757 -26.20622 -24.17722 -23.04765 -21.20564 -20.35441 -18.24011 -17.10846 -16.27202 -16.06648 -15.65389 -14.73436 -14.50790 -14.34779 -14.07891 -13.81294 -13.21252 -13.03638 -12.70058 -12.46883 -12.23317 -12.08958 -11.87151 -11.63973 -11.33223 -11.13245 -11.12040 -10.96848 -10.89373 -10.55277 -9.95706 -9.50634 -9.23964 -9.13772 -8.61161 -8.35945 -8.00349 -6.01232 -4.04575 2.83184 3.05693 3.31341 3.37837 3.40352 4.15673 4.47434 4.62180 4.85487 5.01522 5.07297 5.18968 5.21853 5.34603 5.36143 5.53906 5.62514 5.67199 5.73945 5.78671 5.86518 5.94278 5.98710 6.20142 6.26505 6.31463 6.37124 6.68037 6.84001 7.20047 7.31666 7.59281 7.70113 7.81911 8.02422 8.36913 8.38704 9.02350 9.59565 11.10021 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047117 B = 0.004887 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.123122 B = 5727.526919 C = 6013.533279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 C -0.169 4.169 4 N -0.603 5.603 5 C 0.121 3.879 6 C 0.032 3.968 7 N -0.531 5.531 8 C 0.061 3.939 9 C 0.026 3.974 10 C -0.524 4.524 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.891 5.891 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.039 3.961 19 C 0.528 3.472 20 O -0.549 6.549 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.017 0.983 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.121 0.879 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 4.909 -16.568 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.038 3.962 3 C -0.227 4.227 4 N -0.336 5.336 5 C -0.002 4.002 6 C -0.096 4.096 7 N -0.257 5.257 8 C -0.065 4.065 9 C -0.012 4.012 10 C -0.563 4.563 11 H 0.073 0.927 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.091 4.091 19 C 0.317 3.683 20 O -0.427 6.427 21 H 0.102 0.898 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.035 0.965 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.139 0.861 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.744 5.088 -16.554 17.718 hybrid contribution 1.144 -0.054 1.094 1.584 sum 4.888 5.034 -15.460 16.978 Atomic orbital electron populations 1.22223 0.94775 1.02267 1.03572 1.21008 0.95023 0.93260 0.86945 1.22209 1.00550 0.96347 1.03602 1.47594 1.51281 1.28873 1.05895 1.21543 0.93489 0.87507 0.97710 1.22484 0.93850 1.02103 0.91204 1.62673 1.36402 1.19038 1.07616 1.22451 0.97841 0.97638 0.88561 1.19113 0.93423 0.97502 0.91123 1.21147 0.94611 1.42568 0.97999 0.92738 1.24988 0.94795 0.95684 0.98760 1.69972 1.04748 1.48207 1.30091 0.86592 0.79020 0.79109 0.83244 1.20693 1.21187 1.19888 1.22331 1.02545 0.89554 0.94685 1.20295 0.79734 0.83281 0.85009 1.90604 1.37087 1.27735 1.87295 0.89760 0.92290 0.92799 0.90115 0.90060 0.93135 0.92076 0.91006 0.90935 0.94366 0.88859 0.91424 0.95704 0.96451 0.95534 0.92914 0.86092 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.09 37.16 0.34 -1.74 16 2 C 0.14 1.63 3.24 -67.93 -0.22 1.41 16 3 C -0.17 -1.92 9.09 37.16 0.34 -1.58 16 4 N -0.60 -8.17 2.80 -167.01 -0.47 -8.64 16 5 C 0.12 1.35 6.49 -4.32 -0.03 1.32 16 6 C 0.03 0.42 5.59 -3.68 -0.02 0.40 16 7 N -0.53 -9.15 4.73 -236.11 -1.12 -10.26 16 8 C 0.06 1.22 4.89 -3.82 -0.02 1.20 16 9 C 0.03 0.65 4.89 -27.88 -0.14 0.52 16 10 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 14 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.04 0.69 5.17 -5.19 -0.03 0.66 16 19 C 0.53 8.84 6.98 -11.67 -0.08 8.76 16 20 O -0.55 -10.38 12.68 5.55 0.07 -10.31 16 21 H 0.08 1.28 5.93 -51.93 -0.31 0.98 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.73 7.84 -51.93 -0.41 0.33 16 25 H 0.08 1.15 6.05 -51.93 -0.31 0.84 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.09 1.06 7.91 -51.93 -0.41 0.65 16 32 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 33 H 0.02 0.49 8.05 -51.93 -0.42 0.07 16 34 H 0.02 0.47 6.69 -51.93 -0.35 0.12 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.12 2.41 6.77 -51.93 -0.35 2.06 16 38 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 LS Contribution 300.66 15.07 4.53 4.53 Total: -1.00 -31.14 300.66 -7.84 -38.98 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -6.30 Total: -2.39 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.27 Total: -2.34 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.85 Total: -44.89 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.14 -7.84 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356344193.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.984 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds