Wall clock time and date at job start Sun Mar 29 2020 22:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47422 * 2 1 4 4 N 1.46499 * 109.47500 * 180.02562 * 3 2 1 5 5 C 1.37102 * 120.00335 * 265.46863 * 4 3 2 6 6 H 1.07996 * 120.00546 * 146.20712 * 5 4 3 7 7 C 1.38953 * 119.99372 * 326.21399 * 5 4 3 8 8 N 1.31405 * 120.00423 * 337.34276 * 7 5 4 9 9 Si 1.86807 * 119.99719 * 157.34803 * 7 5 4 10 10 H 1.48502 * 109.47391 * 89.99718 * 9 7 5 11 11 H 1.48499 * 109.46900 * 209.99933 * 9 7 5 12 12 H 1.48506 * 109.47072 * 329.99331 * 9 7 5 13 13 C 1.34776 * 120.00044 * 85.45848 * 4 3 2 14 14 O 1.21289 * 119.99964 * 180.02562 * 13 4 3 15 15 C 1.50696 * 119.99846 * 0.02562 * 13 4 3 16 16 H 1.09004 * 110.59621 * 321.54310 * 15 13 4 17 17 C 1.55104 * 110.68889 * 84.65408 * 15 13 4 18 18 C 1.54593 * 102.84547 * 155.78230 * 17 15 13 19 19 C 1.53985 * 105.22875 * 338.14910 * 18 17 15 20 20 N 1.47904 * 107.05589 * 358.72806 * 19 18 17 21 21 C 1.46901 * 111.00196 * 145.84600 * 20 19 18 22 22 H 1.08994 * 109.47533 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47232 * 299.99856 * 1 2 3 24 24 H 1.09002 * 109.47424 * 59.99251 * 1 2 3 25 25 H 1.09005 * 109.47232 * 240.00144 * 2 1 3 26 26 H 1.09002 * 109.47424 * 120.00749 * 2 1 3 27 27 H 1.09005 * 109.46734 * 60.00432 * 3 2 1 28 28 H 1.08993 * 109.47542 * 300.00511 * 3 2 1 29 29 H 0.97006 * 120.00450 * 180.02562 * 8 7 5 30 30 H 1.08997 * 110.71009 * 37.46601 * 17 15 13 31 31 H 1.09011 * 110.81000 * 274.13647 * 17 15 13 32 32 H 1.09000 * 110.30595 * 219.18271 * 18 17 15 33 33 H 1.09001 * 110.31259 * 97.11865 * 18 17 15 34 34 H 1.09003 * 109.92113 * 118.07654 * 19 18 17 35 35 H 1.09004 * 109.92053 * 239.37669 * 19 18 17 36 36 H 1.09001 * 109.47396 * 60.11992 * 21 20 19 37 37 H 1.08999 * 109.47654 * 180.12622 * 21 20 19 38 38 H 1.09004 * 109.46852 * 300.12977 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1911 1.5361 1.1827 6 1 5.1343 1.0238 1.3021 7 6 3.6727 2.2901 2.2284 8 7 2.8057 3.2464 1.9823 9 14 4.2085 1.9445 3.9843 10 1 5.4002 2.7686 4.3096 11 1 3.1025 2.2842 4.9152 12 1 4.5485 0.5056 4.1239 13 6 4.1784 1.3503 -1.1644 14 8 5.3913 1.3498 -1.1649 15 6 3.4244 1.2477 -2.4651 16 1 2.5405 0.6207 -2.3475 17 6 3.0336 2.6560 -2.9845 18 6 2.8756 2.4297 -4.5056 19 6 3.6929 1.1613 -4.8129 20 7 4.3027 0.7192 -3.5400 21 6 4.3873 -0.7461 -3.4778 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6767 1.9564 -0.8899 29 1 2.4441 3.7730 2.7123 30 1 3.8270 3.3754 -2.7819 31 1 2.0922 2.9840 -2.5435 32 1 3.2749 3.2802 -5.0581 33 1 1.8267 2.2742 -4.7581 34 1 3.0372 0.3819 -5.2010 35 1 4.4733 1.3893 -5.5390 36 1 5.0008 -1.1099 -4.3021 37 1 4.8373 -1.0442 -2.5308 38 1 3.3866 -1.1714 -3.5545 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356998886.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:16 Heat of formation + Delta-G solvation = -48.462118 kcal Electronic energy + Delta-G solvation = -18548.438163 eV Core-core repulsion = 15811.115429 eV Total energy + Delta-G solvation = -2737.322733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04205 -38.87195 -37.00999 -34.54409 -33.21940 -32.87320 -30.42416 -27.55501 -26.68418 -26.19295 -23.37211 -22.31437 -21.75696 -20.27409 -18.85389 -18.16970 -16.94245 -16.75270 -16.16229 -15.56619 -15.39945 -15.38374 -15.05731 -14.58128 -14.36750 -13.89781 -13.45754 -13.41210 -13.27408 -13.00353 -12.81635 -12.64643 -12.48303 -12.32700 -12.20060 -12.08859 -12.03478 -11.93003 -11.64405 -11.41863 -10.88535 -10.24590 -9.42979 -9.25911 -8.32830 -6.01430 1.35849 1.39954 1.52549 2.05583 2.27862 2.80607 3.01107 3.38950 3.70212 3.77297 3.99107 4.09535 4.20908 4.27989 4.35458 4.42568 4.47435 4.56280 4.59621 4.72088 4.81246 4.91519 4.94829 4.96681 4.99437 5.11960 5.14383 5.28595 5.29236 5.39216 5.47889 5.60193 5.84974 6.15474 6.23690 6.59984 7.23127 7.51547 8.14859 8.69033 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026130 B = 0.008265 C = 0.007532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.317250 B = 3386.954437 C = 3716.469835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.102 3.898 4 N -0.455 5.455 5 C -0.342 4.342 6 H 0.058 0.942 7 C 0.005 3.995 8 N -0.884 5.884 9 Si 0.977 3.023 10 H -0.279 1.279 11 H -0.264 1.264 12 H -0.270 1.270 13 C 0.455 3.545 14 O -0.618 6.618 15 C 0.061 3.939 16 H 0.078 0.922 17 C -0.109 4.109 18 C -0.117 4.117 19 C 0.036 3.964 20 N -0.531 5.531 21 C 0.025 3.975 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.274 0.726 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 -4.491 -9.490 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.022 4.022 4 N -0.174 5.174 5 C -0.470 4.470 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.522 5.522 9 Si 0.800 3.200 10 H -0.205 1.205 11 H -0.188 1.188 12 H -0.195 1.195 13 C 0.244 3.756 14 O -0.503 6.503 15 C -0.050 4.050 16 H 0.096 0.904 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.091 4.091 20 N -0.256 5.256 21 C -0.123 4.123 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.652 -4.162 -9.325 12.761 hybrid contribution -0.034 -0.316 1.135 1.179 sum -7.685 -4.478 -8.190 12.091 Atomic orbital electron populations 1.21626 0.92988 1.02460 1.02322 1.21892 0.97639 0.96773 1.00780 1.21783 0.80084 0.96601 1.03700 1.43787 1.06003 1.63388 1.04272 1.19327 1.06856 1.30308 0.90556 0.92383 1.26000 0.97224 0.92986 1.03517 1.69977 1.31398 1.16939 1.33904 0.85215 0.78230 0.78775 0.77785 1.20505 1.18796 1.19458 1.20964 0.87855 0.80990 0.85745 1.90455 1.16414 1.55904 1.87556 1.22665 0.93710 0.98434 0.90223 0.90396 1.22403 1.01181 0.93824 0.97406 1.22407 1.01520 0.98179 0.93418 1.22992 0.97793 0.97221 0.91130 1.64312 1.47657 1.11272 1.02338 1.22438 1.00776 0.87056 1.02061 0.91143 0.92964 0.91437 0.92976 0.93747 0.88997 0.91881 0.91635 0.93614 0.89601 0.89602 0.88540 0.91545 0.89612 0.89396 0.94534 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.91 71.98 0.71 -2.92 16 2 C -0.13 -4.74 6.05 30.59 0.18 -4.56 16 3 C 0.10 4.44 4.59 86.38 0.40 4.84 16 4 N -0.46 -24.23 2.56 -635.55 -1.62 -25.85 16 5 C -0.34 -20.15 8.98 84.04 0.75 -19.40 16 6 H 0.06 3.70 7.70 -2.91 -0.02 3.68 16 7 C 0.01 0.29 4.92 84.93 0.42 0.70 16 8 N -0.88 -47.96 11.34 21.66 0.25 -47.72 16 9 Si 0.98 43.16 29.61 68.60 2.03 45.19 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.46 23.97 6.64 87.66 0.58 24.55 16 14 O -0.62 -38.43 16.43 -3.06 -0.05 -38.48 16 15 C 0.06 2.40 1.71 44.57 0.08 2.48 16 16 H 0.08 2.77 5.56 -2.38 -0.01 2.75 16 17 C -0.11 -3.74 6.21 31.86 0.20 -3.54 16 18 C -0.12 -2.81 6.92 31.47 0.22 -2.60 16 19 C 0.04 0.91 6.70 86.44 0.58 1.49 16 20 N -0.53 -19.20 4.86 -888.24 -4.31 -23.52 16 21 C 0.03 0.80 9.30 127.69 1.19 1.99 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.79 6.74 -2.38 -0.02 1.77 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 4.46 5.34 -2.38 -0.01 4.45 16 28 H 0.06 2.49 5.53 -2.39 -0.01 2.47 16 29 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 30 H 0.04 1.84 8.05 -2.39 -0.02 1.83 16 31 H 0.09 2.70 6.96 -2.38 -0.02 2.69 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.37 7.73 -2.39 -0.02 1.35 16 35 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.04 1.39 8.00 -2.39 -0.02 1.37 16 38 H 0.04 1.16 8.00 -2.39 -0.02 1.14 16 Total: -1.00 -72.23 301.09 2.62 -69.61 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.02 Total: 17.72 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.31 Total: 3.04 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -5.69 Total: -97.09 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.05 Total: -38.48 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -72.23 2.62 -69.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356998886.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.148 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds