Wall clock time and date at job start Sun Mar 29 2020 23:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.53515 * 2 1 4 4 C 1.53046 * 109.55705 * 239.92850 * 2 1 3 5 5 N 1.46850 * 109.57710 * 180.94402 * 4 2 1 6 6 C 1.46897 * 110.99853 * 185.81095 * 5 4 2 7 7 C 1.46841 * 111.19327 * 61.71075 * 5 4 2 8 8 C 1.53038 * 109.52867 * 298.25904 * 7 5 4 9 9 C 1.53117 * 109.27889 * 59.18113 * 8 7 5 10 10 H 1.08994 * 109.52617 * 182.44312 * 9 8 7 11 11 N 1.46494 * 109.52260 * 62.31317 * 9 8 7 12 12 C 1.46508 * 119.99925 * 97.28983 * 11 9 8 13 13 C 1.34783 * 120.00354 * 277.28938 * 11 9 8 14 14 O 1.21688 * 119.99948 * 47.64930 * 13 11 9 15 15 C 1.46370 * 120.00025 * 227.64671 * 13 11 9 16 16 H 1.08001 * 120.00486 * 0.02562 * 15 13 11 17 17 C 1.40052 * 120.00004 * 179.97438 * 15 13 11 18 18 N 1.30673 * 119.99663 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00283 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46990 * 90.00184 * 19 17 15 21 21 H 1.48497 * 109.47431 * 210.00145 * 19 17 15 22 22 H 1.48502 * 109.46961 * 330.00568 * 19 17 15 23 23 H 1.08999 * 109.47185 * 299.90289 * 1 2 3 24 24 H 1.08999 * 109.47245 * 59.90345 * 1 2 3 25 25 H 1.08999 * 109.47386 * 179.89977 * 1 2 3 26 26 H 1.09001 * 109.45922 * 60.90125 * 4 2 1 27 27 H 1.08997 * 109.40614 * 300.95978 * 4 2 1 28 28 H 1.09003 * 109.46927 * 291.83392 * 6 5 4 29 29 H 1.08996 * 109.47431 * 51.83893 * 6 5 4 30 30 H 1.09006 * 109.46387 * 171.83988 * 6 5 4 31 31 H 1.09004 * 109.45975 * 178.24245 * 7 5 4 32 32 H 1.09003 * 109.46623 * 58.27819 * 7 5 4 33 33 H 1.09004 * 109.50165 * 299.23873 * 8 7 5 34 34 H 1.09003 * 109.53544 * 179.14145 * 8 7 5 35 35 H 1.08998 * 109.46453 * 84.75612 * 12 11 9 36 36 H 1.09005 * 109.46814 * 204.75315 * 12 11 9 37 37 H 1.08996 * 109.47044 * 324.75711 * 12 11 9 38 38 H 0.97004 * 119.99670 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0423 -0.7226 -1.2481 5 7 3.5106 -0.7427 -1.2371 6 6 4.0387 -1.3064 -2.4866 7 6 4.0229 -1.4744 -0.0716 8 6 3.5711 -0.7734 1.2116 9 6 2.0412 -0.7239 1.2488 10 1 1.7156 -0.1872 2.1398 11 7 1.5077 -2.0880 1.2767 12 6 1.1221 -2.6978 2.5518 13 6 1.3717 -2.7820 0.1293 14 8 2.2890 -2.8236 -0.6691 15 6 0.1204 -3.4858 -0.1563 16 1 -0.6939 -3.4487 0.5521 17 6 -0.0211 -4.2066 -1.3487 18 7 0.9640 -4.2511 -2.2061 19 14 -1.6182 -5.1042 -1.7136 20 1 -2.5403 -4.1972 -2.4431 21 1 -1.3350 -6.2987 -2.5492 22 1 -2.2489 -5.5303 -0.4385 23 1 -0.3633 0.5123 0.8908 24 1 -0.3634 0.5153 -0.8891 25 1 -0.3634 -1.0276 -0.0018 26 1 1.6929 -0.2008 -2.1389 27 1 1.6652 -1.7453 -1.2548 28 1 3.7979 -2.3684 -2.5363 29 1 3.5894 -0.7918 -3.3359 30 1 5.1207 -1.1775 -2.5145 31 1 5.1121 -1.4986 -0.1080 32 1 3.6365 -2.4936 -0.0840 33 1 3.9687 0.2414 1.2312 34 1 3.9385 -1.3250 2.0770 35 1 0.1035 -2.4020 2.8025 36 1 1.1747 -3.7832 2.4660 37 1 1.8014 -2.3619 3.3352 38 1 0.8658 -4.7501 -3.0321 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358619571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:35 Heat of formation + Delta-G solvation = 58.904356 kcal Electronic energy + Delta-G solvation = -19674.730337 eV Core-core repulsion = 16942.063364 eV Total energy + Delta-G solvation = -2732.666974 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21119 -35.76046 -34.72118 -32.77076 -32.13079 -30.62465 -26.67101 -25.84384 -25.72549 -24.60696 -21.92302 -20.66976 -20.12337 -17.93182 -16.51420 -15.99097 -15.08994 -14.76876 -14.54928 -14.04088 -13.70000 -13.24464 -12.99097 -12.52788 -12.29502 -11.89454 -11.72648 -11.65972 -11.50669 -11.40439 -11.25381 -11.11023 -10.69896 -10.57303 -10.43623 -10.31192 -9.97590 -9.57562 -9.29488 -9.18793 -8.42467 -7.47609 -6.92869 -6.55840 -6.08475 -4.83871 3.01216 3.11421 3.13465 3.94464 4.06970 4.57467 5.25371 5.35242 5.56770 5.77602 5.90593 6.04234 6.08389 6.26694 6.36367 6.41305 6.43155 6.48682 6.49935 6.59262 6.63753 6.69517 6.80615 6.84273 6.96789 7.01881 7.20073 7.22734 7.25570 7.54357 7.95561 8.11905 8.16885 8.36033 8.42430 8.52988 8.80666 9.26514 10.23419 10.43654 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.011514 C = 0.009849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.605456 B = 2431.249303 C = 2842.320494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.052 0.948 4 C -0.057 4.057 5 N -0.528 5.528 6 C 0.039 3.961 7 C -0.003 4.003 8 C -0.121 4.121 9 C 0.172 3.828 10 H 0.055 0.945 11 N -0.671 5.671 12 C 0.119 3.881 13 C 0.552 3.448 14 O -0.500 6.500 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.084 3.916 18 N -0.757 5.757 19 Si 0.906 3.094 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.264 1.264 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.021 0.979 27 H 0.193 0.807 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.023 0.977 32 H 0.138 0.862 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 2.657 4.367 5.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.070 0.930 4 C -0.181 4.181 5 N -0.252 5.252 6 C -0.110 4.110 7 C -0.129 4.129 8 C -0.160 4.160 9 C 0.067 3.933 10 H 0.073 0.927 11 N -0.411 5.411 12 C -0.025 4.025 13 C 0.368 3.632 14 O -0.389 6.389 15 C -0.557 4.557 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.385 5.385 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.188 1.188 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.040 0.960 27 H 0.205 0.795 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.153 0.847 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.024 3.049 3.827 4.894 hybrid contribution -0.933 -0.674 -0.183 1.165 sum -0.909 2.376 3.644 4.444 Atomic orbital electron populations 1.21819 0.95523 1.03737 0.99224 1.21311 0.95088 0.98155 0.95987 0.92976 1.25117 0.88988 1.10479 0.93555 1.62249 1.09125 1.51984 1.01813 1.22036 0.97464 0.99201 0.92319 1.23587 0.95956 1.04583 0.88780 1.21895 0.96658 0.99376 0.98075 1.20664 0.92218 0.83831 0.96578 0.92653 1.47212 1.72725 1.14493 1.06637 1.21137 0.97569 0.97957 0.85850 1.17609 0.87553 0.78842 0.79223 1.89805 1.38898 1.62156 1.48031 1.21368 0.98924 1.31259 1.04157 0.90946 1.25792 0.97306 0.95058 0.95546 1.69927 1.30404 1.31129 1.07064 0.86366 0.82182 0.79199 0.79176 1.19558 1.20376 1.18804 0.94375 0.94148 0.89930 0.96032 0.79458 0.93938 0.93930 0.94278 0.95832 0.84716 0.93295 0.93286 0.95429 0.92320 0.94230 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.97 37.16 0.33 -2.51 16 2 C -0.09 -1.79 2.63 -90.53 -0.24 -2.03 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.06 -1.35 4.26 -3.83 -0.02 -1.37 16 5 N -0.53 -12.09 4.86 -242.95 -1.18 -13.28 16 6 C 0.04 0.85 9.43 60.06 0.57 1.42 16 7 C 0.00 -0.07 5.03 -3.84 -0.02 -0.09 16 8 C -0.12 -2.38 5.79 -26.65 -0.15 -2.54 16 9 C 0.17 3.41 2.70 -67.81 -0.18 3.23 16 10 H 0.06 0.99 8.02 -51.93 -0.42 0.57 16 11 N -0.67 -14.15 2.28 -179.57 -0.41 -14.56 16 12 C 0.12 2.11 10.11 59.85 0.60 2.71 16 13 C 0.55 13.54 3.57 -12.99 -0.05 13.49 16 14 O -0.50 -13.17 5.83 5.20 0.03 -13.14 16 15 C -0.52 -12.98 7.93 -35.63 -0.28 -13.26 16 16 H 0.07 1.73 7.74 -52.49 -0.41 1.32 16 17 C 0.08 2.09 5.50 -17.36 -0.10 1.99 16 18 N -0.76 -19.81 11.83 55.55 0.66 -19.16 16 19 Si 0.91 18.54 29.56 -169.99 -5.02 13.51 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 1.80 5.51 -51.93 -0.29 1.52 16 26 H 0.02 0.52 8.04 -51.93 -0.42 0.10 16 27 H 0.19 5.02 2.65 5.05 0.01 5.03 16 28 H 0.04 1.03 7.29 -51.93 -0.38 0.65 16 29 H 0.04 0.89 8.02 -51.93 -0.42 0.47 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.14 3.47 4.11 13.82 0.06 3.53 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 1.06 7.96 -51.93 -0.41 0.64 16 37 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 38 H 0.27 6.63 8.29 -40.82 -0.34 6.29 16 LS Contribution 282.45 15.07 4.26 4.26 Total: -1.00 -26.80 282.45 -6.80 -33.60 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.60 Total: 7.72 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 0.47 Total: 1.04 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.93 Total: -46.99 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.03 Total: -13.14 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.80 -6.80 -33.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358619571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.504 kcal (2) G-P(sol) polarization free energy of solvation -26.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds