Wall clock time and date at job start Sun Mar 29 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.53515 * 2 1 4 4 C 1.53046 * 109.55705 * 239.92850 * 2 1 3 5 5 N 1.46850 * 109.57710 * 180.94402 * 4 2 1 6 6 C 1.46897 * 110.99853 * 185.81095 * 5 4 2 7 7 C 1.46841 * 111.19327 * 61.71075 * 5 4 2 8 8 C 1.53038 * 109.52867 * 298.25904 * 7 5 4 9 9 C 1.53117 * 109.27889 * 59.18113 * 8 7 5 10 10 H 1.08994 * 109.52617 * 182.44312 * 9 8 7 11 11 N 1.46494 * 109.52260 * 62.31317 * 9 8 7 12 12 C 1.46508 * 119.99925 * 97.28983 * 11 9 8 13 13 C 1.34783 * 120.00354 * 277.28938 * 11 9 8 14 14 O 1.21688 * 119.99948 * 47.64930 * 13 11 9 15 15 C 1.46370 * 120.00025 * 227.64671 * 13 11 9 16 16 H 1.08001 * 120.00486 * 0.02562 * 15 13 11 17 17 C 1.40052 * 120.00004 * 179.97438 * 15 13 11 18 18 N 1.30673 * 119.99663 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00283 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46990 * 90.00184 * 19 17 15 21 21 H 1.48497 * 109.47431 * 210.00145 * 19 17 15 22 22 H 1.48502 * 109.46961 * 330.00568 * 19 17 15 23 23 H 1.08999 * 109.47185 * 299.90289 * 1 2 3 24 24 H 1.08999 * 109.47245 * 59.90345 * 1 2 3 25 25 H 1.08999 * 109.47386 * 179.89977 * 1 2 3 26 26 H 1.09001 * 109.45922 * 60.90125 * 4 2 1 27 27 H 1.08997 * 109.40614 * 300.95978 * 4 2 1 28 28 H 1.09003 * 109.46927 * 291.83392 * 6 5 4 29 29 H 1.08996 * 109.47431 * 51.83893 * 6 5 4 30 30 H 1.09006 * 109.46387 * 171.83988 * 6 5 4 31 31 H 1.09004 * 109.45975 * 178.24245 * 7 5 4 32 32 H 1.09003 * 109.46623 * 58.27819 * 7 5 4 33 33 H 1.09004 * 109.50165 * 299.23873 * 8 7 5 34 34 H 1.09003 * 109.53544 * 179.14145 * 8 7 5 35 35 H 1.08998 * 109.46453 * 84.75612 * 12 11 9 36 36 H 1.09005 * 109.46814 * 204.75315 * 12 11 9 37 37 H 1.08996 * 109.47044 * 324.75711 * 12 11 9 38 38 H 0.97004 * 119.99670 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0423 -0.7226 -1.2481 5 7 3.5106 -0.7427 -1.2371 6 6 4.0387 -1.3064 -2.4866 7 6 4.0229 -1.4744 -0.0716 8 6 3.5711 -0.7734 1.2116 9 6 2.0412 -0.7239 1.2488 10 1 1.7156 -0.1872 2.1398 11 7 1.5077 -2.0880 1.2767 12 6 1.1221 -2.6978 2.5518 13 6 1.3717 -2.7820 0.1293 14 8 2.2890 -2.8236 -0.6691 15 6 0.1204 -3.4858 -0.1563 16 1 -0.6939 -3.4487 0.5521 17 6 -0.0211 -4.2066 -1.3487 18 7 0.9640 -4.2511 -2.2061 19 14 -1.6182 -5.1042 -1.7136 20 1 -2.5403 -4.1972 -2.4431 21 1 -1.3350 -6.2987 -2.5492 22 1 -2.2489 -5.5303 -0.4385 23 1 -0.3633 0.5123 0.8908 24 1 -0.3634 0.5153 -0.8891 25 1 -0.3634 -1.0276 -0.0018 26 1 1.6929 -0.2008 -2.1389 27 1 1.6652 -1.7453 -1.2548 28 1 3.7979 -2.3684 -2.5363 29 1 3.5894 -0.7918 -3.3359 30 1 5.1207 -1.1775 -2.5145 31 1 5.1121 -1.4986 -0.1080 32 1 3.6365 -2.4936 -0.0840 33 1 3.9687 0.2414 1.2312 34 1 3.9385 -1.3250 2.0770 35 1 0.1035 -2.4020 2.8025 36 1 1.1747 -3.7832 2.4660 37 1 1.8014 -2.3619 3.3352 38 1 0.8658 -4.7501 -3.0321 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358619571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:34 Heat of formation + Delta-G solvation = 41.778300 kcal Electronic energy + Delta-G solvation = -19675.472979 eV Core-core repulsion = 16942.063364 eV Total energy + Delta-G solvation = -2733.409615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.95607 -37.55472 -36.41696 -34.64480 -33.77809 -32.28826 -28.51883 -27.51910 -27.36705 -26.26714 -23.64868 -22.34087 -21.93032 -19.69024 -18.29088 -17.77692 -16.85354 -16.55325 -16.22773 -15.72088 -15.38380 -14.95042 -14.72354 -14.05725 -13.98984 -13.52102 -13.38214 -13.25424 -13.16536 -12.98793 -12.90553 -12.80495 -12.55117 -12.19476 -12.10020 -11.99049 -11.63671 -11.22698 -11.05667 -10.91333 -10.22813 -9.28998 -8.70250 -8.37186 -7.90453 -6.75409 1.38112 1.42984 1.54781 2.22747 2.27740 2.98622 3.42472 3.59010 3.95868 4.16051 4.32254 4.45211 4.62863 4.66417 4.74082 4.80753 4.86689 4.88400 4.94742 4.98737 5.05648 5.12919 5.14309 5.18740 5.25364 5.27003 5.34295 5.50631 5.60886 5.75512 6.17590 6.27975 6.31161 6.59316 6.66635 6.74477 6.92230 7.51872 8.40869 8.61461 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.011514 C = 0.009849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.605456 B = 2431.249303 C = 2842.320494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 H 0.061 0.939 4 C -0.058 4.058 5 N -0.527 5.527 6 C 0.045 3.955 7 C -0.002 4.002 8 C -0.115 4.115 9 C 0.170 3.830 10 H 0.088 0.912 11 N -0.675 5.675 12 C 0.117 3.883 13 C 0.547 3.453 14 O -0.522 6.522 15 C -0.541 4.541 16 H 0.077 0.923 17 C 0.041 3.959 18 N -0.800 5.800 19 Si 0.975 3.025 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.254 1.254 23 H 0.066 0.934 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.001 0.999 27 H 0.172 0.828 28 H 0.010 0.990 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.340 3.553 6.069 7.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.079 0.921 4 C -0.183 4.183 5 N -0.251 5.251 6 C -0.104 4.104 7 C -0.128 4.128 8 C -0.154 4.154 9 C 0.066 3.934 10 H 0.106 0.894 11 N -0.414 5.414 12 C -0.026 4.026 13 C 0.362 3.638 14 O -0.412 6.412 15 C -0.577 4.577 16 H 0.095 0.905 17 C -0.177 4.177 18 N -0.429 5.429 19 Si 0.797 3.203 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.178 1.178 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.019 0.981 27 H 0.185 0.815 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.633 3.954 5.564 6.855 hybrid contribution -0.660 -0.919 -0.701 1.331 sum -1.293 3.035 4.863 5.876 Atomic orbital electron populations 1.21728 0.94643 1.02500 1.00671 1.21320 0.95832 0.98254 0.95090 0.92085 1.25008 0.89508 1.09407 0.94414 1.62342 1.08727 1.51758 1.02233 1.22000 0.98813 0.97097 0.92506 1.23453 0.96024 1.03334 0.89999 1.21864 0.96731 0.99936 0.96905 1.20802 0.92186 0.83275 0.97182 0.89409 1.47191 1.72544 1.14845 1.06796 1.21284 0.99118 0.97263 0.84966 1.17764 0.87262 0.78846 0.79962 1.89871 1.39394 1.62793 1.49137 1.21655 0.99461 1.31945 1.04652 0.90465 1.26658 1.00368 0.95483 0.95164 1.70056 1.32667 1.32483 1.07706 0.85316 0.77987 0.77823 0.79182 1.19313 1.20179 1.17754 0.91529 0.94109 0.92393 0.98055 0.81513 0.97154 0.93630 0.92076 0.95432 0.87654 0.91949 0.91794 0.94055 0.93479 0.91288 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 8.97 71.98 0.65 -4.50 16 2 C -0.09 -3.41 2.63 -10.74 -0.03 -3.44 16 3 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.06 -2.78 4.26 86.33 0.37 -2.41 16 5 N -0.53 -24.05 4.86 -922.57 -4.48 -28.53 16 6 C 0.05 2.00 9.43 127.69 1.20 3.20 16 7 C 0.00 -0.07 5.03 86.33 0.43 0.36 16 8 C -0.12 -4.24 5.79 30.65 0.18 -4.06 16 9 C 0.17 6.26 2.70 45.07 0.12 6.38 16 10 H 0.09 2.73 8.02 -2.39 -0.02 2.71 16 11 N -0.67 -27.36 2.28 -840.25 -1.91 -29.27 16 12 C 0.12 3.84 10.11 127.77 1.29 5.13 16 13 C 0.55 26.97 3.57 86.36 0.31 27.28 16 14 O -0.52 -28.19 5.83 -4.31 -0.03 -28.22 16 15 C -0.54 -27.13 7.93 24.83 0.20 -26.94 16 16 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 17 C 0.04 2.04 5.50 85.31 0.47 2.51 16 18 N -0.80 -43.29 11.83 21.84 0.26 -43.03 16 19 Si 0.98 38.25 29.56 68.60 2.03 40.28 16 20 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 23 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 25 H 0.06 2.47 5.51 -2.39 -0.01 2.46 16 26 H 0.00 0.05 8.04 -2.39 -0.02 0.03 16 27 H 0.17 9.16 2.65 -19.65 -0.05 9.10 16 28 H 0.01 0.50 7.29 -2.39 -0.02 0.48 16 29 H 0.04 1.94 8.02 -2.39 -0.02 1.92 16 30 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.03 1.16 8.12 -2.38 -0.02 1.14 16 32 H 0.11 5.51 4.11 14.31 0.06 5.57 16 33 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.63 7.96 -2.38 -0.02 1.62 16 37 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 38 H 0.27 13.83 8.29 -92.70 -0.77 13.06 16 Total: -1.00 -58.44 282.45 2.11 -56.33 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 1.05 Total: 28.93 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.19 Total: 3.50 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -6.14 Total: -100.83 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.03 Total: -28.22 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -58.44 2.11 -56.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358619571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.111 kcal (2) G-P(sol) polarization free energy of solvation -58.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds