Wall clock time and date at job start Sun Mar 29 2020 22:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47074 * 2 1 4 4 N 1.46500 * 109.47142 * 180.02562 * 3 2 1 5 5 C 1.47247 * 120.07749 * 269.97628 * 4 3 2 6 6 C 1.53112 * 108.40010 * 110.03783 * 5 4 3 7 7 C 1.51689 * 110.75648 * 85.59151 * 6 5 4 8 8 N 1.45756 * 113.93850 * 293.22816 * 7 6 5 9 9 C 1.46901 * 111.00064 * 302.69212 * 8 7 6 10 10 C 1.50695 * 109.47280 * 191.86481 * 9 8 7 11 11 H 1.08003 * 119.99755 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00408 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00144 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99656 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47714 * 89.99591 * 14 12 10 16 16 H 1.48499 * 109.47072 * 209.99797 * 14 12 10 17 17 H 1.48508 * 109.47320 * 329.99454 * 14 12 10 18 18 C 1.46874 * 112.43372 * 67.71220 * 8 7 6 19 19 C 1.33611 * 120.07474 * 90.00307 * 4 3 2 20 20 O 1.21272 * 119.88674 * 359.71865 * 19 4 3 21 21 H 1.09001 * 109.47038 * 59.99987 * 1 2 3 22 22 H 1.08996 * 109.46930 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46713 * 300.00057 * 1 2 3 24 24 H 1.09002 * 109.47134 * 240.00711 * 2 1 3 25 25 H 1.08996 * 109.47681 * 120.00293 * 2 1 3 26 26 H 1.08999 * 109.47146 * 59.99912 * 3 2 1 27 27 H 1.09001 * 109.47199 * 299.99915 * 3 2 1 28 28 H 1.09002 * 109.68162 * 350.31383 * 5 4 3 29 29 H 1.08998 * 109.71470 * 229.78095 * 5 4 3 30 30 H 1.09003 * 109.22037 * 325.26575 * 6 5 4 31 31 H 1.08992 * 109.22272 * 205.92531 * 6 5 4 32 32 H 1.09000 * 108.58881 * 172.07450 * 7 6 5 33 33 H 1.09000 * 108.47294 * 54.30169 * 7 6 5 34 34 H 1.08998 * 109.47054 * 311.87109 * 9 8 7 35 35 H 1.09005 * 109.46900 * 71.86863 * 9 8 7 36 36 H 0.97000 * 119.99691 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.60202 * 154.46763 * 18 8 7 38 38 H 1.08995 * 109.73859 * 34.06083 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2435 1.4429 1.2733 6 6 4.9166 0.0781 1.4421 7 6 6.2607 0.0509 0.7395 8 7 6.1710 0.1432 -0.7124 9 6 5.3407 -0.9388 -1.2584 10 6 5.5038 -0.9904 -2.7556 11 1 6.1590 -0.2898 -3.2519 12 6 4.8173 -1.9326 -3.4918 13 7 4.9593 -1.9773 -4.7985 14 14 3.6846 -3.1448 -2.6333 15 1 2.3165 -2.5727 -2.5533 16 1 3.6458 -4.4152 -3.4012 17 1 4.1910 -3.4102 -1.2627 18 6 5.6881 1.4554 -1.1619 19 6 4.1741 1.4428 -1.1571 20 8 3.5666 1.4379 -2.2067 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 1.8934 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.5524 1.6158 2.0982 29 1 5.0011 2.2264 1.2589 30 1 4.2743 -0.6937 1.0178 31 1 5.0625 -0.1212 2.5036 32 1 6.7692 -0.8779 0.9979 33 1 6.8582 0.8863 1.1046 34 1 5.6524 -1.8895 -0.8259 35 1 4.2950 -0.7534 -1.0130 36 1 4.4760 -2.6400 -5.3164 37 1 6.0488 1.6516 -2.1716 38 1 6.0494 2.2315 -0.4873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364293521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:20 Heat of formation + Delta-G solvation = -25.266129 kcal Electronic energy + Delta-G solvation = -18992.343457 eV Core-core repulsion = 16256.026578 eV Total energy + Delta-G solvation = -2736.316880 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.26422 -36.74802 -35.75910 -33.33089 -32.27428 -31.02548 -28.41393 -27.43537 -25.19659 -24.29589 -22.49378 -21.29934 -19.74953 -18.49116 -16.96926 -16.58094 -16.06123 -15.33377 -14.63124 -14.55340 -14.12056 -13.99088 -13.39903 -13.14614 -12.98716 -12.78631 -12.29816 -12.08281 -11.86384 -11.83210 -11.43373 -11.33019 -11.07916 -11.02255 -10.71242 -10.53199 -10.40786 -10.24785 -9.79697 -9.31286 -9.11831 -8.45722 -8.28892 -7.47029 -5.93010 -3.88075 3.28291 3.33972 3.37354 3.39079 3.41785 4.50923 4.77193 4.85372 4.97330 5.05829 5.19142 5.25022 5.31840 5.40852 5.43012 5.58591 5.62445 5.72687 5.74155 5.80478 5.90090 5.93414 6.11890 6.17789 6.31834 6.38450 6.43777 6.47870 6.76928 6.91126 6.95305 7.60636 7.72821 7.86171 8.01778 8.71094 8.86980 9.15402 9.68861 11.21139 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.012277 C = 0.009570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.045854 B = 2280.100094 C = 2924.998983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.120 3.880 4 N -0.625 5.625 5 C 0.116 3.884 6 C -0.182 4.182 7 C 0.051 3.949 8 N -0.512 5.512 9 C 0.157 3.843 10 C -0.497 4.497 11 H 0.080 0.920 12 C 0.075 3.925 13 N -0.899 5.899 14 Si 0.867 3.133 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.270 1.270 18 C 0.058 3.942 19 C 0.493 3.507 20 O -0.515 6.515 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.027 0.973 35 H -0.003 1.003 36 H 0.261 0.739 37 H 0.109 0.891 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.876 6.559 15.829 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C -0.003 4.003 4 N -0.361 5.361 5 C -0.007 4.007 6 C -0.223 4.223 7 C -0.078 4.078 8 N -0.235 5.235 9 C 0.031 3.969 10 C -0.535 4.535 11 H 0.098 0.902 12 C -0.127 4.127 13 N -0.538 5.538 14 Si 0.695 3.305 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.195 1.195 18 C -0.073 4.073 19 C 0.279 3.721 20 O -0.387 6.387 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.014 0.986 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.777 6.410 14.870 16.628 hybrid contribution -1.537 -0.825 0.824 1.929 sum -5.315 5.585 15.694 17.485 Atomic orbital electron populations 1.21671 0.95539 1.01677 1.01486 1.21950 0.95808 0.97757 1.02834 1.21401 0.80024 0.96633 1.02238 1.48136 1.06106 1.75368 1.06452 1.21736 0.95914 0.97298 0.85748 1.22517 1.00093 0.98186 1.01458 1.21832 0.94985 1.02420 0.88608 1.61827 1.52723 1.02375 1.06569 1.20355 0.90109 0.89162 0.97290 1.20867 1.26891 1.17085 0.88656 0.90203 1.24781 0.96145 0.97139 0.94612 1.69877 1.42991 1.35780 1.05150 0.87001 0.82208 0.81351 0.79971 1.20257 1.21229 1.19494 1.22526 0.88318 0.92574 1.03880 1.21658 0.92077 0.75373 0.82970 1.90725 1.70218 1.46845 1.30931 0.92507 0.92757 0.93004 0.91013 0.92317 0.91429 0.90151 0.90348 0.91002 0.90814 0.90817 0.90967 0.91682 0.95494 0.98606 0.92881 0.87326 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.14 -2.29 6.26 -26.73 -0.17 -2.46 16 3 C 0.12 1.80 5.41 -4.04 -0.02 1.78 16 4 N -0.62 -10.23 2.35 -173.05 -0.41 -10.63 16 5 C 0.12 1.42 5.95 -3.58 -0.02 1.40 16 6 C -0.18 -2.43 5.47 -27.34 -0.15 -2.58 16 7 C 0.05 0.77 5.18 -5.11 -0.03 0.75 16 8 N -0.51 -10.37 4.83 -238.91 -1.15 -11.52 16 9 C 0.16 3.84 2.62 -4.98 -0.01 3.82 16 10 C -0.50 -14.67 8.88 -34.44 -0.31 -14.97 16 11 H 0.08 2.57 7.50 -52.48 -0.39 2.18 16 12 C 0.07 2.27 5.47 -17.82 -0.10 2.17 16 13 N -0.90 -28.92 13.96 55.43 0.77 -28.15 16 14 Si 0.87 22.70 27.47 -169.99 -4.67 18.03 16 15 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 17 H -0.27 -6.70 6.54 56.52 0.37 -6.33 16 18 C 0.06 1.12 5.25 -4.64 -0.02 1.09 16 19 C 0.49 10.17 4.51 -11.16 -0.05 10.12 16 20 O -0.52 -13.16 16.38 5.56 0.09 -13.07 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.06 0.87 8.11 -51.93 -0.42 0.44 16 26 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 27 H 0.08 1.34 7.41 -51.93 -0.38 0.96 16 28 H 0.08 0.75 7.79 -51.93 -0.40 0.35 16 29 H 0.07 0.78 6.76 -51.93 -0.35 0.43 16 30 H 0.07 1.21 6.57 -51.93 -0.34 0.87 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.82 7.78 -51.93 -0.40 0.41 16 34 H 0.03 0.68 7.10 -51.93 -0.37 0.31 16 35 H 0.00 -0.09 4.68 -51.93 -0.24 -0.33 16 36 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 37 H 0.11 2.34 7.57 -51.93 -0.39 1.94 16 38 H 0.07 1.10 6.68 -51.93 -0.35 0.75 16 LS Contribution 293.64 15.07 4.43 4.43 Total: -1.00 -34.84 293.64 -7.61 -42.45 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.16 Total: -1.14 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.51 Total: -0.39 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.79 Total: -50.30 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.67 Total: 18.03 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.84 -7.61 -42.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364293521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.183 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds